Progress 07/01/23 to 06/30/24
Outputs Target Audience: Rural Highschool Students Progress: PD has joined Science on Wheels at the University of Missouri-Columbia. Thus far, Science on Wheels has not provided any experiences reaching out to rural high school students due to lack of funding. As Science on Wheels historically works with rural high school students, PD has been in conversations with Science on Wheels organizers to obtain funding for rural high school outreach. This is an ongoing passion for the PD (who is from a rural area) to educate rural high school students on advanced careers in STEM. Undergraduate Students, University of Missouri-Columbia Progress: PD has actively engaged with mentoring two undergraduate students. The first is an active student in the PD host laboratory (Lloyd Sumner laboratory, Univ. of Missouri). Now a sophomore at Univ. of Missouri, this student is a woman from Brazil that PD has taught basic laboratory skills and aided in advancing her understanding of metabolomics/mass spectrometry. This student is exceptionally high achieving, having been awarded two undergraduate research fellowships and currently undertaking a DAAD Research Internship in Science and Engineering in Germany. The second is a senior undergraduate man from a laboratory in mechanical engineering, in which PD taught basic plant science skills. This student has since graduated from Univ. of Missouri and will be beginning a PhD program at Univ. of Missouri in Fall 2024. University of Missouri-Columbia Metabolomics Center Annual Workshop Participants Progress: PD has actively taught in one Univ. of Missouri-Columbia metabolomics core sponsored workshop. This was a once yearly weeklong session, with a minimum of five hours of laboratory time each day. Participants were taught basic metabolomics workflows, starting sample extraction to derivatizations suitable for LCMS and GCMS. This also included introduction to instrumentation and data processing. Attendees included primarily graduate students and postdoctoral fellows. The backgrounds of attendees were a diverse mix of cultures and backgrounds including underrepresented minorities. Approximately half of the training group were women. Several attendees were from other universities in the Univ. of Missouri system, broadening PD efforts in audience reached. Conference Attendees Progress: Univ. of Missouri College of Agriculture, Food, and Natural Resources (CAFNR) Research Symposium: The CAFNR research symposium is a Univ. of Missouri campus wide event. As such, it was widely multi-disciplinary, including participants from both STEM and non-STEM backgrounds. Furthermore, participants included undergraduate and graduate students in addition to postdoctoral fellows. PD presented a poster and spoke with a wide variety of attendees, many of non-plant science backgrounds. Metabolomics Association of North America (October 2023): The Metabolomics Association of North America consists of a select audience of several hundred individuals, primarily from a mass spectrometry/metabolomics background. As an international conference, attendees are from diverse backgrounds and universities spanning primarily Mexico, Canada, and the United States. American Society of Mass Spectrometry (June 2024): The American Society of Mass Spectrometry is the premier conference for scientists utilizing mass spectrometry. As a massive international conference (ASMS 2024 was between 6-7,000 attendees from around the world) featuring academic and industry researchers, the target audience was from a broad background. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided? Training: Mass Spectrometry Instrumentation: PD has gained valuable experience using trapped ion mobility spectrometry (tims) through the Sumner lab tims-tof instrument. The Sumner lab has also recently acquired an orbitrap (Thermo Exploris 480) on which PD has now been trained. Through both of these instruments, PD has gained considerable knowledge on mass spectrometry instrumentation. These expertise will prove valuable as PD moves forward with research outlined in this project and in future career endeavors. RNA extraction, qRT-PCR workflows, and instrumentation: PD has gained knowledge of necessary procedures for plant RNA extraction, quantitative Reverse Transcription-Polymerase Chain Reaction (qRT-PCR) workflows, and associated instrumentation for qRT-PCR. This enables PD to perform multi-faceted experiments, wherein traditional molecular biology approaches like qRT-PCR can be combined with cutting-edge mass spectrometry instrumentation. This is a powerful approach, effectively allowing PD to independently perform advanced experiments that possess greater research impact. Ultimately, especially considering the knowledge gaps in root border cell research, this allows greater progress/impact in the field of border cell research. Professional Development: Bayer-University Mentorship Program (B4U): PD has now completed B4U, which is a competitive annual program that provides one on one mentoring for students and post-doctoral researchers. This mentee driven program offered mentees with soft skill coaching and career development advice. Each mentee was paired with an industry scientist at Bayer as a mentor to generate professional development goals for career development, and they worked together to complete those goals. Bayer provided structured content on soft skill development, an understanding of industry working environment, and expectations of an influential scientist. Current Co-coordinator Univ. of Missouri Interdisciplinary Plant Group (IPG) Plant Talks: IPG Plant Talks is a three times per month seminar that takes place in the Fall and Spring semesters each academic year. This program is student/post-doc lead, in which two coordinators (which include PD and one graduate student in Univ. of Missouri Plant Sciences) arrange undergraduate/graduate student and post-doc speakers. Plant Talks also arranges two industry-based representatives each semester to come and discuss their careers in industry as a form of networking and soft skill development.PD would like to mention a personal enjoyment in serving as co-coordinator, as it has proven very rewarding to arrange research presentations from student/postdoc speakers on the Univ. of Missouri campus. Conferences: PD has attended three conferences over the 2023-2024 award year. These consist of the Metabolomics Association of North America (MANA) 2023, Mizzou College of Agriculture, Food, and Natural Resources (CAFNR) Research Symposium 2023, and American Society of Mass Spectrometry 2024. PD was part of the local organizing committee and scientific organizing committee for MANA 2023. This taught PD valuable skills in organization, communication, team work, and evaluation of scientific merit. At MANA 2023, PD also provided an oral presentation, which encouraged PD public speaking skills, networking, and enhanced research dissemination. At the remaining conferences, PD presented a poster which also encouraged public speaking skills, networking, and enhancement of research dissemination. How have the results been disseminated to communities of interest?Research has been disseminated at three conferences as of this progress report to a wide, research-based community. Two conferences primarily contained metabolomics/mass spectrometry professionals. Our novel approach to plant-based metabolomics has been well received due to our combinatorial approach on hardware development and instrument method development for live tissue usage. While these conference featured attendees from a plant science background, the vast majority were from a medical background. As such, PD was able to reach an audience needing deeper understanding of the complexity of plant systems and therefore the necessity of plant science research. The last conference featured many different disciplines both STEM and non-STEM related. This allowed education of a broad community at different experience levels on border cell functions. Many attendees arose from the humanities, meaning PD had a unique experience explaining border cells to non-scientists. What do you plan to do during the next reporting period to accomplish the goals? Training: Goal 2: Goal 2 is currently in progress. To accomplish this goal, PD plans to continue receiving training as needed from aforementioned collaborators. This will also entail further education on experimental design. Goal 3: As this goal has not been started, PD will be working with collaborators identified on campus to establish an experimental protocol and receive training. PD has already received some introductory training, helping with quick entry to this goal. Goal 4: As this goal has not been started, PD plans to perform literature searches to learn proper methodologies in growth inhibition assays. As part of training, PD plans to conduct initial experiments using known compounds from established literature. Successful replication of these experiments should suffice for training and establish a firm basis for experimental treatments using identified metabolites from these studies. Research: Goal 2: PD has already started this goal and plans to further refine an experimental protocol. PD also plans to continue working with collaborators as necessary for experimental design/procedures. PD plans to work with collaborators on proper data presentation and transparency for publication. Goal 3: PD has not yet started on research goal 3. To meet this goal, PD plans to establish an experimental protocol and carry out immunoblot experiments. PD has established communications with a collaborator on-campus to help with teaching necessary experimental design/procedural skills and data presentation. PD plans to acquire necessary materials within the next quarter in preparation for these experiments. Goal 4: PD has not yet started on research goal 4. To meet this goal, PD plans to establish an experimental protocol and perform preliminary experiments to ensure consistency with established literature. After ensuring proper protocol has been established, PD will carry out experiments as outlined in project initiation. PD has already acquired the bacterial species necessary for these growth inhibition assays. As this goal is relatively straightforward, PD expects this goal to progress relatively quickly compared to previous goals.
Impacts What was accomplished under these goals?
Training Goal 1 has been completed with the following results: PD has received training from Bruker personnel in operation and management of the Sumner lab tims-tof instrument. Border cell secretions have been analyzed using UHPLC-tims-qToF-MS. Data on border cell secretions has been processed and some compounds have been identified. Identification of more metabolites is ongoing as of this progress update. Goal 2 has been completed in part and is currently ongoing in line with PD submitted timeline. Current progress is as follows: PD has reached out to collaborators for instruction in proper qRT-PCR usage and methods development. This training has been generously provided by Dr. Norma Castro-Guerrero, a scientist in the laboratory of Dr. David Mendoza Cozatl. A preliminary experimental protocol has been developed based on utilization of Medicago truncatula full root tissues. A derivative protocol has also been developed for utilization of M. truncatula root border cells, which need a slightly different approach due to tissue constraints. Data collection is currently in progress, with the next step being data assembly for publication. As such, after data is collected and analyzed, the next step will be the last milestone of Goal 2. Goals 3 and 4 are to be performed under the 2024-2025 project year. Research Goal 1 is completed as outlined in project initiation. Thus far, PD has achieved all milestones outlined below: Major issue: Root border cell secreted metabolites/compounds influence the surrounding soil but are at extremely low concentrations. Current high-end mass spectrometry instrumentation can detect these compounds, but a protocol for harvesting was needed. PD aimed to develop a protocol for harvesting and identifying border cell secretions. Research Aim 1 Milestone 1: A protocol for the collection of border cell secreted metabolites has been developed. This protocol maintains border cell viability and allows collection of border cell secretions in sufficient amounts for later mass spectrometry analysis. The developed protocol entails using a bioreactor chamber containing border cells. The bioreactor system was custom designed by PD and Lloyd W. Sumner (PD host mentor). A liquid flow is established through the bioreactor such that border cell secretions are washed away. These secretions are then trapped on a downstream Solid Phase Extraction device. Solid Phase extraction allows direct harvesting of compounds from solution, making it ideal for trapping border cell secreted compounds. Research Aim 1 Milestone 2: PD is currently performing more collections of border cell secreted metabolites. The goal of these further collections is to increase depth of coverage/identifications of secreted metabolites. However, this milestone has been completed as PD possesses finalized mass spectrometry data suitable for publication. Research Aim 1 Milestone 3: PD has identified newly secreted metabolites arising from isolated border cells. As mentioned in the milestone progress update above, PD is currently performing more secreted metabolite collections to increase depth of coverage in the pursuit of more compound identifications. Current evidence has shown a wide diversity in compound secretion, with most identified compounds possessing properties relating to plant defense or induction of symbiotic (beneficial) interactions. Research Aim 1 Milestone 4: Several high-level secretions have been identified that are available through commercial vendors. Key Outcomes/Impact: Key outcomes from Research Aim 1 were a custom system/method for border cell secreted metabolite collection/analysis and evidence of border cells secreting metabolites independently of the plant root. This will prompt action on further root border cell research in plant health studies, supporting development of robust crop species. This ultimately will impact food quality and quantity for human consumption. We expect this research to be of interest to academic and private industry researchers in the near future. However, we expect longer term impacts to entail economic benefits for farmers and health benefits for the general public. Goal 2 is currently in progress, in line with the overall timeline provided upon application for this postdoctoral fellowship. Current progress on Goal 2 is outlined as follows: A protocol for collection of border cell RNA has been developed and is currently being refined as needed for optimal RNA yield. qRT-PCR materials have been acquired and some preliminary experiments have been performed in M. truncatula total root tissues as proof of concept. These have been performed successfully and PD is confident in future success using border cells in qRT-PCR. Goals 3 and 4 are to be performed under the 2024-2025 project year.
Publications
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2024
Citation:
Kranawetter, C. and Sumner, L.W. (2024, 4 June). Poster Presentation. Preliminary Identification of Specialized Metabolite Secretions and Secretory Pathways in Medicago truncatula Border Cells. 2024 American Society of Mass Spectrometry (ASMS) conference (international conference).
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2023
Citation:
Kranawetter, C. and Sumner, L.W. (2023, 6 October). Poster Presentation. Metabolomics of Secreted Specialized Metabolites from Isolated Medicago truncatula Border Cells. 2023 University of Missouri-Columbia College of Agriculture, Food, and Natural Resources (CAFNR) Research Symposium (local symposium).
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2023
Citation:
Kranawetter, C. and Sumner, L. W. (2023, 26 October). Oral Presentation. Natural Product Secretion Patterns and Mechanisms of Isolated Border Cells from Medicago truncatula. 2023 Metabolomics Association of North America (MANA) (International Conference). Columbia, MO.
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