Source: SASYA, LLC submitted to NRP
A PROBIOTIC CELL FACTORY FOR PRODUCTION & DELIVERY OF SUPPLEMENTS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1030584
Grant No.
2023-33530-39793
Cumulative Award Amt.
$175,000.00
Proposal No.
2023-03670
Multistate No.
(N/A)
Project Start Date
Apr 1, 2023
Project End Date
Mar 31, 2024
Grant Year
2023
Program Code
[8.8]- Biofuels and Biobased Products
Recipient Organization
SASYA, LLC
15716 60TH AVE N
PLYMOUTH,MN 55446
Performing Department
(N/A)
Non Technical Summary
Growing restrictions on antibiotics and other growth promoters in the livestock industry has left an acute need for alternative supplements to enhance animal growth and prevent infection. Sasya aims to address these issues by using synthetic biology to develop a probiotic cell factory to produce and deliver performance supplements to livestock. Engineered probiotics represent an alternative approach with several advantages to traditional chemical or fermentative synthesis methods. By employing a probiotic cell factory, the supplement is produced in situ, eliminating product loss during purification and processing. The objective of this proposal is to combine state-of-the-art developments in synthetic biologyto develop a probiotic chassis to deliver high performance supplements directly in the intestinal tract. These improvements include i) developing a suite of promoter systems that provide desired expression in the intestinal tract ii) incorporating a basic metabolic structure that is conducive to high level product formation and iii) incorporating a self-destruction switch triggered outside the GI tract as a biocontainment measure. Each of these improvements are structured as independent objectives to allow advancing the tools in parallel. Successful completion will provide a chassis for the production of supplements across a variety of species. This project is directly in line with USDA SBIR priorities to develop new technologies to increase the competitiveness of agriculturally derived products.
Animal Health Component
75%
Research Effort Categories
Basic
20%
Applied
75%
Developmental
5%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
50232991040100%
Knowledge Area
502 - New and Improved Food Products;

Subject Of Investigation
3299 - Poultry, general/other;

Field Of Science
1040 - Molecular biology;
Goals / Objectives
Growing restrictions on antibiotics and other growth promoters in the livestock industry has left an acute need for alternative supplements to enhance animal growth and prevent pathogen infection. Sasya aims to address both of these issues by using synthetic biology to develop a probiotic cell factory to produce and deliver performance supplements to livestock. Engineered probiotics represent an innovative approach with several advantages to traditional chemical or fermentative synthesis methods. By employing a probiotic cell factory the supplement is produced in situ, eliminating product loss during purification or processing. Furthermore in situ production allows for delivery of less stable supplements that may not be suitable for traditional oral delivery. Importantly, supplements can be produced "on-demand" in response to when they are needed.In this proposal, Sasya aims to take advantage of recent advances in synthetic biology and our understanding of therole of microbiome in human and animal health to develop a nimble probiotic platform that is capable of not only colonizing but also genetically wired to sense stimuli and respond by produce appropriate supplements. Given consumer demands for transparency in food supply chain andincreasingly stringent regulatory constraints on food production, the entire agriculture industry is struggling to maintain profitability. If successful, a probiotic vehicle to deliver supplements promises to reduce production costs by eliminating the need to provide exogenous supplements to food and feed.This project is directly in line with the priorities of USDA SBIR priorities to develop new technologies to increase the competitiveness of agriculturally derived products.
Project Methods
To determine the optimal expression system for our biosynthetic enzymes of interest, we will usemolecular biology techniques to build and test promotersof various strength and that respond to differnt stimuli.We will evaluate these expression systems in biologically relevent conditions that mimic the intestinal tract where our engineered probiotic will be deployed.Having a sufficient pool of precursor molecules that our biosynthetic enzymes can convert to thedesired product is critical to achieve our desired product output.We will use metabolic modeling and empirical experiments to guide strain design to maximize the avaliable pool of precursor moleculesin the probiotic strain. We will overexpress genes required to sythesize precursor molecules and delete repressive genes and genes that contribute toward carbon flux down undesired pathways. During strain engineering we will carefully evaluate the trade-off between increasing desired precursors and decreasing fitness as adequete intestinal colonization is critical for a successful probiotic.Using standard molecular biology techniques we will build and evaluate two biocontainment strategies for our probiotic strains. We will evaluate both "kill switches" independently and in combination with a goal of an escape frequency of < 1x10^8.

Progress 04/01/23 to 03/31/24

Outputs
Target Audience:The target audience that will benefit from this project are livestock farmers, in particular poultry farmers, as well as meat-eating consumers. In poultry farming feed can represent 60-70% of the total costs. Profit margins are very thin and therefore poultry farmers are under significant pressure to optimize the conversion of feed to meat while keeping costs low and birds healthy. Our product will improve performance by supporting lean muscle building in broilers and overall health of the birds through our probiotic platform. In addition our product will allow farmers to reduce the level of costly methionine included in their broiler diets. This will benefit farmers by improving profit margins, which will in turn benefit consumers with lowered costs of high quality lean meat. Lower costs will particularly benefit low income households where the rising costs of high quality meat are most acutely felt. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?During this project we employed asummer intern toassistwith the genetic engineering of the probiotic strain. During her employmentshe learned about and gained hands-on experience with new laboratory techniques and skills.After completing her internship with Sasya she returned to her graduate program where these learned skills helped improve her graduate research. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? During our phase I project we sought to demonstrate the proof of concept for a probiotic platform that can produce and deliver performance enhancing supplements in situ in the livestock gut. To this end we created a probiotic that produces an ergogenic supplementwith demonstrated ability to improve performance of broiler chickens. To this end we screened several enzymes that are responsible for producing thetarget supplement and introduced the top candidatesinto the probiotic platform. We thentested a variety of expression systems for these enzymes to determine which will lead to optimal production of the target product. We also made several genetic modifications to improve product output by our probiotic strain. This genetic engineering effort led to a probiotic strain that is capable of producing the ergogenic supplement when grown in the lab using only glucose as a carbon source. Looking ahead to delivering our product to livestock, we recognized the need for a biocontainment mechanism that would prevent proliferation of our probiotic strain outside the target host. To this end we designed, implemented and tested two genetic switches that are activated when the probiotic is expelled from the intestinaltract and prevent the strain from replicating further. One of our switches showed excellent growth inhibition in environmental conditions while the other still demonstrated some growth and will require more engineering, which we propose to do during our phase II award. A probiotic strain containing these biocontainment switches will serve as a platform to deliver not only the target supplement we are currently working on, but future supplements as well. During our phase I we delivered on our proposed goals and demonstrated the feasability of creating a probiotic delivery vehicle that can provide performance enhancing supplements to livestock. For our phase II we will optmize our strainfurther and develop a process where our probiotic can be produced at scale. We believe this product will provide healthy profit margins at every level of the process and will boost poultry performance, providing savings for both farmers and consumers.

Publications