Source: OKLAHOMA STATE UNIVERSITY submitted to
IDEAS: AI-BASED APPROACH TO UNDERSTAND STRESS IN LOW AND HIGH GROWTH RATE CATTLE
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1030191
Grant No.
2023-69014-39716
Cumulative Award Amt.
$1,000,000.00
Proposal No.
2022-10728
Multistate No.
(N/A)
Project Start Date
Jun 1, 2023
Project End Date
May 31, 2028
Grant Year
2023
Program Code
[A1261]- Inter-Disciplinary Engagement in Animal Systems
Recipient Organization
OKLAHOMA STATE UNIVERSITY
(N/A)
STILLWATER,OK 74078
Performing Department
(N/A)
Non Technical Summary
The current interdisciplinary, integrated proposal addresses program priorities precision animal management, animal production synergy, and societal aspects of animal welfare. Recently, an increase in sudden death in feedlot cattle due to congestive heart failure has been reported. Unfortunately, this condition can only be detected after death, and no tools are currently available to detect animals more prone to this or other stress-related conditions. Our long-term goal is to increase knowledge related to death in feedlot cattle, develop tools to identify more susceptible animals earlier and develop management strategies to intervene and enhance sustainability. Specific objectives are (1a) Develop algorithms using precision livestock monitoring tools to understand stress responsiveness in medium and high growth rate cattle from weaning through finishing and consequences on carcass quality, (1b) Establish a producer training program on using precision animal management tools to identify animals more susceptible to stress; (2) Characterize the protein and metabolite profiles of heart and liver samples from cattle who died due to bovine congestive heart failure to better understand the biochemical basis of this condition; and (3a) Evaluate the social and economic determinants of precision livestock tools to minimize negative effects of stress on beef animals, (3b) Extend knowledge and recommendations to extension offices and operations on the use of precision technology for detection of stressed animals. Our team of life-, physical-, and social scientists are highly-qualified to advance knowledge and develop tools to mitigate the impact of stress on cattle and improve stewardship of natural resources.
Animal Health Component
25%
Research Effort Categories
Basic
50%
Applied
25%
Developmental
25%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
3113310100050%
3053310101050%
Goals / Objectives
Specific objectives are:(1) (a) Develop algorithms using precision livestock monitoring tools to understand stress in medium and high growth rate cattle from weaning to the finishing stage and to determine carcass quality. (b) Establish a training program for producers on using precision animal management tools to identify animals more prone to stress.(2) Characterize the protein and metabolite profiles of heart and liver collected from cattle who died due to bovine congestive heart failure to understand the biochemical basis.(3) (a) Evaluate the social and economic determinants of precision livestock tools to minimize stress in beef animals. (3b) Extend knowledge and recommendations to extension offices and operations on using precision technology to detect stress.
Project Methods
Specific objectives are:(1) (a) Develop algorithms using precision livestock monitoring tools to understand stress in medium and high growth rate cattle from weaning to the finishing stage and to determine carcass quality. (b) Establish a training program for producers regarding the use of precision animal management tools to identify animals more prone to stress.(2) Characterize the protein and metabolite profiles of heart and liver collected from cattle who died due to bovine congestive heart failure to understand the biochemical basis.(3) (a) Evaluate the social and economic determinants of precision livestock tools to minimize stress in beef animals. (b) Extend knowledge and recommendations to extension offices and operations using precision technology to detect stress.Approximately 150 spring-calving and 150 fall-calving Angus-sired cows are available for use in this series of experiments. The cows and their progeny will be maintained at the Range Cow Research Center near Stillwater, Oklahoma. To investigate the influence of genetic capacity for growth rate and the impact of calving season on sudden death and stress in feedlot cattle, Angus cows will be mated to sires divergent in genetic capacity for growth rate. Approximately six sires ranking in the top 5th percentile for growth and six sires below the 50th percentile for growth will be used each year to create medium and high-growth rate cattle. For perspective, sires used during the fall 2022 breeding season will average 167 and 92 pounds yearling weight expected progeny difference (YW EPD) for high- and moderate-growth sires, respectively.All spring and fall-calving cows will be synchronized for timed artificial insemination. High- and moderate-growth natural service sires will be turned out with the cows beginning 10 days following timed artificial insemination. Natural service sires will remain with the cows for an additional 45 days. Within the calving season, all cows will be managed as a contemporary group throughout the production cycle. Winter feeding and supplementation practices will be managed to maintain herd average body condition scores of 5.0 through the winter months. Calves will be weaned at approximately 205 days of age using the fenceline weaning technique. Calves will be backgrounded for 60 days at the Range Cow Research Center before being shipped to the Willard Sparks Beef Cattle Research Center for finishing (Figure 11). During the weaning/backgrounding phase, calves will be fed grass hay and approximately five pounds of a concentrate supplement.Finishing phase: Following the 60-day preconditioning phase, steers will be transported to the Willard Sparks Beef Research Center (WSBRC) for finishing. The proposed study will utilize technology (Insentec Intake System) that measures feed and water intake on an individual basis without physical barriers that isolate animals from feed and water sources.Upon arrival at the WSBRC, steers will be sorted into two groups of 30 steers, each by body weight and date of birth, and placed in two pens, with each sire selection group being equally represented in each group. Steers will be offered diets for a common step-up routine, beginning with a 30% roughage starter diet with four-step-up diets to an 8% roughage finishing diet over 28 days. Steers will be moved to the Insentec feeding facility before moving to the final finisher diet for training to use the Insentec feeding units over a two-week period. Following training and when all steers are confirmed to have regular use of the Insentec feeding units, feeding of the finishing diets will be initiated. Steer weights will be collected at 14-day intervals at 0700 before feed delivery and growth performance will be estimated by regression of bodyweights over the number of days to determine average daily gain. Growth rate and feed intake will be monitored for 70 days following the start of the finishing diets, and feed efficiency (kg gain per kg of feed) and residual feed intake will be determined for each individual steer. Following the 70-day feeding intake determination period, steers will be returned to their original pens for group feeding and intense monitoring until they achieve an estimated 1.3 cm backfat and will be harvested at a commercial packing plant with individual carcass data collection. Average daily gain, morbidity, mortality, and treatment cost will be evaluated for the finishing phase. Calves will be monitored daily by trained personnel and "pulled" based on a modified DART (depression, appetite, respiration, and temperature) protocol for suspected BRD as described previously.Physiologicaland precision sensor data will be integrated using AI-approach.

Progress 06/01/23 to 05/31/24

Outputs
Target Audience:The target audiences for this project are producers, animal scientists, academia, and animal industry professionals. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Dr. Lalman has hired a post-doctoral fellow. The postdoctoral fellow is working with sensors to be used in this research. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?We are starting the animal experiments in October. In addition, we will start working on objective 2.

Impacts
What was accomplished under these goals? We started working on the objective 1a. Various algorithms to work on multi-modal data are in progress. Multimodal data, such as those collected from sensors, video, and audio data from farm animals provide a rich representation of the various factors that affect the stress levels in animals. However, while they provide a comprehensive view of the animal's behavior, they can possess noisy observations and, sometimes, irrelevant information that does not add to the inference process to assess the stress levels of the animal. As a first step in AI-based livestock monitoring, we worked on two aspects of multimodal livestock activity monitoring and evaluated them on publicly available datasets. Specifically, we explored how time series data, such as sensor data (ECG, EEG, IMU, etc.) is temporally structured and exploit these structures to learn robust representations using deep learning frameworks. Additionally, we also explored how individual behaviors evolve when present in a social dynamic. Specifically, we aim to understand livestock behavior changes as they move and interact with other individuals around them in a group setting. This will allow us to model their stress levels as a function of social experience. We briefly describe the two works below. In the first work, we worked on the problem of Social Activity Recognition (SAR), a critical component in real-world tasks like livestock activity surveillance and stress monitoring. This work is currently under review at an international conference focused on machine learning and pattern recognition and provides one of the first approaches to tackle SAR in an unsupervised manner and from streaming videos, i.e., without any labeled data and without storing the data locally or in the cloud. Unlike traditional event understanding approaches, SAR necessitates modeling individual actors' appearance and motions and contextualizing them within their social interactions. Traditional action localization methods fall short due to their single-actor, single-action assumption. Previous SAR research has relied heavily on densely annotated data, but privacy concerns limit their applicability in real-world settings. In this work, we propose a self-supervised approach based on multi-actor predictive learning for SAR in streaming videos. Using a visual-semantic graph structure, we model social interactions, enabling relational reasoning for robust performance with minimal labeled data. In this work, we make three specific contributions towards action understanding from videos. First, we are the first to tackle the problem of self-supervised social activity detection in streaming videos. Second, we show that relational reasoning over the proposed visual-semantic graph structure by spatial and temporal graph smoothing can help learn the social structure of cluttered scenes in a self-supervised manner requiring only a single pass through the training data to achieve robust performance. Third, we show that the framework can generalize to arbitrary action localization without bells and whistles to achieve competitive performance on publicly available benchmarks. The proposed framework achieves competitive performance on standard human group activity recognition benchmarks. Evaluation of three publicly available human action localization benchmarks demonstrates its generalizability to arbitrary action localization. In the second work, we tackle the problem of time series classification, the task of categorizing sequential data. This work is also under review at an international conference focused on machine learning and pattern recognition. Analyzing sequential data is crucial in making actionable outcomes based on the data collected from the Internet of Things paradigm. Machine learning approaches demonstrate remarkable performance on public benchmark datasets. However, progress has primarily been in designing architectures for learning representations from raw data at fixed (or ideal) time scales, which can fail to generalize to longer sequences. This work introduces a compositional representation learning approach trained on statistically coherent components extracted from sequential data. Based on a multi-scale change space, an unsupervised approach is proposed to segment the sequential data into chunks with similar statistical properties. A sequence-based encoder model is trained in a multi-task setting to learn compositional representations from these temporal components for time series classification. We make four specific contributions to multimodal understanding in this work. First, we are, to the best of our knowledge, to introduce a multi-scale change space for time series data to segment them into statistically atomic components. Second, we introduce the notion of compositional feature learning from temporally segmented components in time series data rather than modeling the raw data points. Third, we show that the temporal components detected by the algorithm are highly correlated with natural boundaries in time series data by evaluating it on the time series segmentation task, achieving state-of-the-art performance compared with other non-learning-based approaches. Finally, we establish a competitive baseline that provides competitive performance with state-of-the-art approaches on benchmark datasets for both time series classification and segmentation with limited training needs and without explicit handcrafting. We demonstrate its effectiveness through extensive experiments on publicly available time series classification benchmarks. Evaluating the coherence of segmented components shows its competitive performance on the unsupervised segmentation task.

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