Recipient Organization
MANDAAMIN INSTITUTE INC
7194 MADAUS ST
LAKE GENEVA,WI 531473616
Performing Department
(N/A)
Non Technical Summary
This project builds on decades of research targeting a new type of corn that utilizes partnerships with seed-borne, bacterial endophytes to create environmentally-friendly, nutritious corn that is better adapted to organic farming. The project will develop organic breeding methods, evaluate economic benefits, do on-farm R&D, and breed non-commodity corn varieties suited for organic agriculture. It will engage organic farmers and companies, addressing their needs for: a) yield competitive hybrids with greater nutrient density (methionine and minerals), b) adaptated inbreds for organic conditions (vigor, weed problems, nitrogen limitations), and c) reduced manure inputs and nitrate pollution. The work includes breeding, laboratory and on-farm research by relevant expertise.Outcomes will be vigorous inbreds and hybrids that foster endophyte partners. Such cultivars a) produce competitive yields while reducing fertilizer inputs and excess nitrate soil residues; b) increase nutritional density in grain and silage leading to higher feeding and sales value. Breeding improved field and sweet corn cultivars will be coupled with gaining new information on a) how composition of endophytic communities relates to their functional services of rhizophagy, nutrient uptake and nitrogen fixation; b) how these partnerships function in different inbreds/hybrids/environmental conditions and with different seed drying practices; c) how to test seed for benefits and durability of endophytic partnerships, d) how to optimize the use of soil quality tests, e) how to manage organic manures for optimal endophytic corn performance, soil quality, and environmental benefits, and f) the composition of grain for alternative diets and markets based on this non-commodity corn.
Animal Health Component
40%
Research Effort Categories
Basic
40%
Applied
40%
Developmental
20%
Goals / Objectives
Our long-term goal is developing climate friendly, high quality, non-commodity corn that utilize partnerships with the microbiome to be more nutrient dense and better adapted to organic soil and weed conditions.Corn is the most grown organic row crop. Organic seed producers and farmers need our non-commodity, robust cultivars, which are, a) productive under organic conditions with weed competition and low available N; and b) provide higher nutritional value grain and thereby higher feeding and financial value. These traits are partially based on plant/microbial partnerships. Connections between corn breeds, soil and manure management and quality, seed borne endophyte communities, rhizophagy, N fixation, mineral uptake efficiency, nutritional value are important. Understanding them will help organic seed companies and farmers.The Mandaamin program has selected for plants that possess specific partnerships with seed-borne endophytes, however there are gaps in our knowledge. Combinations of plants and microbes which partner in rhizophagy cycles produce somewhat differentiated results. Progress was made breeding such plant partnerships but it is not yet clear what the endophytes are, what they do in different parts of the plants, how stabile their communities are from year to year, and how management affects them. It appears that the Mandaamin hybrids are obtaining N from microbial biomass and necromass, and not exclusively from nitrate and ammonium, but we do not know how much. The enhanced uptake of macro and micro nutrients and nitrogen appears paired. Fresh manure application to the Institute's C4-6-based hybrids decreases yield and nutrient uptake but increases those parameters for the commercial hybrid check or for Mandaamin's NG10-based hybrids. Furthermore, N2 fixation (which lowered δ15N in grain) can be substantial but it appears to be specific to certain conditions and hybrids. Based on experience and the literature our key hypotheses are that: 1) development of optimal Mandaamin field and sweet corn hybrids can replace direct application of fresh manures, reduce soil nitrate residues, and increase root biomass relative to conventional hybrids; 2) Mandaamin hybrids can obtain N and minerals more effectively due to a healthier, more strongly branched rooting system in the topsoil, coupled with their consumption of whole microorganisms and the uptake of microbial protein/necromass; 3) fresh organic manures interfere with rhizophagy in C4-6 based hybrids due to bacterial interference with the seed-borne community; 4) soil organic N/soil protein buildup (with green manures, and animal manures) will enhance the productivity of the Mandaamin hybrids; 5) microbes living in foliar tissues of the Mandaamin hybrids, and especially in trichomes, can fix N2; 6) hybrids differ in their regulation of rhizophagy and N2 fixation through how they interact with bacteria but these capacities can be optimized through selection; 7) environments, manuring and breeding/seed production practices can positively or negatively affect composition of the next generation of seed borne endophytes.In addition to these hypotheses, organic farmers and seed companies want to know how to manage endophytes in our hybrids. They wanted to understand how manure, direction of crossing when making hybrids, harvest date and seed drying date and conditions affect endophyte function.To achieve our objectives we will:Breed and select field and sweet corn varieties for endophytes and N efficiency/fixation.Characterize the cultivars for endophytes, agronomic value and nutritional density.Test hypotheses linking seed microbiota, soil and manure quality characteristics, plant/microbial partnerships, root growth and health, grain production and nutrient density.Characterize the populations of seed borne endophytes, their functional capacity, and their durability when plants are grown on different sites with and without manure.Develop understanding of and screening protocols for selecting for plant/endophyte partnership performance in different cultivars, including assessing rhizophagy and N2 fixation.Address questions posed by farmers and seed companies about managing endophytes.
Project Methods
Research methods. Towards developing practical screening methods, in WI seedling roots from breeding lines or hybrids will be grown in sterile media and assessed for microbial colonization of root cells and movement of bacteria from root hairs, and superoxide production by plants and nitric oxide production by endophytes. Seedlings grown in containers on N-limited soil media will also be assessed for chlorophyll content, and tissues will be assessed microscopically for microbial components and metabolites.Seedling assays will also test the effects of harvest timing and drying on rhizophagy and N efficiency. Relevant inbreds will be harvested at weekly intervals from before black layer to 15 % moisture in the field. Seed will be dried to approximately 12 and 7% moisture. Seedling roots from this seed will then be assessed for rhizophagy using sterile media. Seedlings will also be grown in N-limited media and foliar trichomes and chlorophyll scores will be examined. Effects of direction of crossing will also be tested. Hybrid seedlings should demonstrate to what degree the maternal phenotype of microbial partnership dominates.Field corn breeding. Diverse, relevant breeding families will be sequentially self-pollinated while under selection in summer nurseries in WI and winter nurseries. Hand pollination occurs in WI on approximately 2,000 rows selected from the best breeding families. 200 rows comprising mostly of later maturing breeding families or hybrids will be grown each summer in Central IL under organic conditions, inoculated for a palette of foliar disease, hand pollinated, and selected for disease resistance and agronomic traits.Early yield testing: In WI replicated yield trials trials on two sites for two years precede strip trials. Yield, grain moisture at harvest, and plant intactness at harvest (lodging) are criteria. Plot size is mostly 2 or 4 rows wide x approximately 20 feet long, with two or three replications per site. Hybrid testing begins at the S3 level of inbreeding. Local yield trials test up to 1,000 different hybrid combinations with one site considered to be low soil nutrient availability, and another medium or high. Feedback from yield trials determines selection. Successful inbreds will be bulked and released for further testing or direct commercialization after the S6 to S8 stage. Projected outputs are 4-8 finished hybrids for strip testing each year of the project based on performanceMandaamin Institute will rent local organic fields to establish isolations for producing hybrid seed allowing sufficient seed for trials with cooperating farmers and seed companies.A clustered set of ten inbreds and ten hybrids will be planted in replicate 4 row plots on an organically managed, moderately N limited site in Wisconsin each year of the project across manured and not manured strips. The inbreds will be selected from N efficient families. Two conventionally bred, ex-PVP inbreds and the hybrid between them will be chosen as control treatments. These inbreds and hybrids will also be tested in the other Mandaamin, Rutgers and Johnston-Monje trials.Seed from selected inbred lines will be evaluated for root hair, bacterial load, and N efficiency before planting. Soils samples will be analyzed by Cornell University's Soil Health Lab. Soil protein samples will be analyzed for δ15N. In September residual nitrate in the top two feet of soil will be determined. Roots, stover, and grain will be harvested at the end of the season, weighed, dried, and analyzed for N isotope ratios.The inbreds and hybrids will be scored for relative vigor, plant height, number of leaves, hairiness of leaf sheaths and leaves, flowering date, anthesis-silking interval, and grain yield and moisture. Root monoliths will be excavated and number of root tips and branches, root length and necrosis will be determined to estimate root length and health.Roots, stover (stalks, tassels, leaves), and grain will also be harvested, dried, and weighed at harvest to determine dry matter partitioning and mineral content, total N and mineral uptake and natural abundance estimates of N2 fixation. Grain samples will be evaluated using NIR spectroscopy to predict protein, oil, starch, density, and methionine, cysteine, and lysine content in whole grain. Ten samples each year will be analyzed for carotenoids using HPLC.Data will be gathered, variances and means will be calculated and compared using spreadsheets and JMP statistical programs. Models will be constructed to account for variation in crop performance associated with soil and pre-plant scoring parameters and microbial assays from Rutgers and Max Planck Institute.Research on plant/microbiome N-fixation partnerships and rhizophagy by Rutgers University and David Johnston-Monje. Seed of the same set of 20 inbreds and hybrids tested by the Mandaamin Institute, will be examined at both institutions.At Rutgers the nitrogen-transfer activity of endophytes in roots, stems, cob leaves, leaf sheaths (including trichomes and other non-photosynthetic cells) will be evaluated using light and confocal microscopy. Enriched 15N atmospheres will quantify N fixation and in which organs it occurs. Isolated bacteria (Monje lab) will be tagged with the mCherry gene, then inoculated in corn. Bacteria will be visualized within corn cells in roots, leaf sheaths, leaf blades, stems and husk leaves. Corn seedlings will be inoculated with isolated N-fixing bacterial endophytes--then assessed for 15N absorption in inoculated and non-inoculated plants to confirm that bacteria isolated were responsible for N2-fixation.Rhizophagy, roots will be scored as mentioned above.Experiments will suppress plant rhizophagy and compare results with unsuppressed plants for nutrient absorption..David Monje will study seed borne, nitrogen fixing microbiomes and whether there are contrasting patterns as they colonize the organs and rhizosphere of the plant. In the first year, plants will be grown in sterile sand fertigated with N free solution. In the second year 6 inbreds will be grown on an agricultural soil as: a) seed from the same lot that was tested in Colombia the first year; b) seed that was grown from the same lot in Mandaamin Institute trials on a un-manured plot in WI; and c) seed from that same inbred grown on a manured plot side by side with b.Plants will be sequentially sampled to check for transmission of bacteria to the next generation. Harvested plants will be separated into rhizosphere, root, shoot, and seed. DNA will be isolated, the bacterial 16S will be amplified and sequenced to profile the taxonomy of endophyte bacteria. Cultured endophytes will be screened for N on N free media, Nif genes will be amplified used to identify bacteria. Candidate strains will be inoculated into sterile plants and evaluated for their ability to restore the N fixation trait.On-farm research. For varietal trials, 5 hybrids will be planted out in two or three replicated randomized blocks on each 4 farms. Variety x manuring trials will be carried out on 6 farm sites each year. The best- Mandaamin hybrid will be compared with a commercial hybrid. Farmers will grow these cultivars in strips plots across an organic manure treatment, with three replicates on each farm. Manuring practices may include with and without cover crops, timing of planting after green manures, type and placement of animal manure or compost in the crop rotation before growing corn. Mandaamin Institute will collect and analyze soil, plant, and yield samples as described in the attached SARE report. We will document specific practices on each farm, and work with them to describe and estimate their costs and net profitability. Soils, roots, stover, and grain from the project will gathered, and analyzed as mentioned above.