Source: UNIVERSITY OF CALIFORNIA, DAVIS submitted to NRP
BIOENGINEERING SUSTAINABLE 3D SCAFFOLDS FOR ENHANCING DELIVERY AND GROWTH OF PROBIOTICS IN THE GUT
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1028057
Grant No.
2022-67017-37095
Cumulative Award Amt.
$596,150.00
Proposal No.
2021-09611
Multistate No.
(N/A)
Project Start Date
Jun 1, 2022
Project End Date
May 31, 2026
Grant Year
2022
Program Code
[A1364]- Novel Foods and Innovative Manufacturing Technologies
Recipient Organization
UNIVERSITY OF CALIFORNIA, DAVIS
410 MRAK HALL
DAVIS,CA 95616-8671
Performing Department
Food Science & Technology
Non Technical Summary
Novel food products rich in probiotics and prebiotics have significant potential to impact human health. However, the limited viability of probiotics during delivery to the gut and the lack of persistence of these bacteria in the gut significantly limits the success of these novel products. The delivery of probiotics in food products is reduced by the harsh gastrointestinal conditions and the lack of persistence and growth is constrained by the poor mucoadhesion and availability of selective prebiotics respectively. To address these challenges our interdisciplinary team proposes to develop bioengineered 3D scaffolds from the insoluble and soluble spent fractions of the apple and beans processing industry to enable multifold improvement in the delivery of probiotics to the gut and enhanced mucoadhesion and gut colonization. The specific objectives are: (a) assessment of the enhanced survivability of probiotics in the simulated gastro-intestinal environment using 3D delivery scaffolds; (b) ability of 3D scaffolds and soluble oligosaccharides derived from apples and black beans spent fractions to promote growth and mucoadhesion of probiotics in a simulated colonic environment and (c) in-vivo validation of the efficacy of the proposed approach in enhancing persistence and growth of probiotic bacteria. The success of this project will enable: novel food-grade materials with value-added properties (3D scaffolds and prebiotic oligosaccharides) from spent fractions of the plant protein and fruit processing industries; (b) novel process and compositions to develop innovative formulations of food-grade materials with probiotics; and (c) biotransformation of value-added spent materials to create "probiotic biofilms" for enhanced delivery and growth.
Animal Health Component
25%
Research Effort Categories
Basic
75%
Applied
25%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
5015010202040%
5025010200030%
7025010106030%
Goals / Objectives
The central hypothesis of the proposed research is that the plant-based 3D delivery scaffolds (composed of insoluble fraction and with soluble byproducts) infused with high concentration of probiotics will provide a novel, safe and low-cost approach for the delivery, persistence, and growth of desirable bacteria in the gut.The specific objectives are:Aim 1: Assessment of the enhanced survivability of probiotics during simulated in vitro digestion using 3D scaffolds derived from apple and black beans extraction byproducts Aim 2: Assessment of the ability of 3D scaffolds and soluble oligosaccharides derived from apples and black beans spent fractions to promote growth and mucoadhesion of probiotics in a simulated colonic environment Aim 3: Evaluation of in-vivo persistence and growth of probiotics delivered using the optimized compositions of 3D scaffolds containing probiotics and oligosaccharides and their influence on high-fat diet-induced inflammation
Project Methods
Aim 1.In this aim, 3D scaffolds derived from apple and black beans will be evaluated. These scaffolds will be prepared using the spent insoluble fraction after extraction of soluble proteins and apple juice. In addition, control 3D scaffolds will also be developed by decellularization of the apple and beans. The decellularization process is similar to the aqueous extraction of proteins from beans but provides a more extensive removal of cellular components due to the presence of a surfactant and length of treatment time. After the development and characterization of these scaffolds, these scaffolds will be combined with selected probiotic bacteria using a negative pressure-assisted infusion process. The probiotic-infused scaffolds will be divided into two sub-groups. One of the subgroups will be coated with biopolymers derived from concentrated aquafaba solution or apple pectin to seal the surface of the 3D scaffold. The other subgroup will be used for the in-situ growth of infused bacteria using minimal media or nutrient-rich broth. These sub-groups will then be evaluated for enhanced probiotics survivability in a simulated gastrointestinal environment and changes in 3D scaffold composition and structure will be characterized after simulated digestion. Aim 2:Effectiveness of probiotic bacteria is enhanced by their ability to persist and grow in the colonic environment. With this overall motivation, this aim will assess the role of scaffold-probiotic compositions enriched with oligosaccharides in enhancing mucoadhesion and growth of probiotic bacteria in a simulated colonic environment. To enhance the utilization of the byproduct streams from the apple and plant protein industries, the first task in this aim will focus on the extraction and characterization of oligosaccharides. After isolation, these oligosaccharides will be infused along with probiotic cells in 3D scaffolds as developed in Aim 1. The scaffold compositions enriched with oligosaccharides will be incubated in simulated colonic conditions. The growth of microbes and generation of microbial metabolites will be monitored to evaluate the role of scaffold compositions and oligosaccharides. In the next sub-task, the role of scaffold composition in influencing mucoadhesion will also be investigated.Aim 3:This aim will be subdivided into two sub-aims (1) short term in-vivo experiments to evaluate the survivability, persistence, and adhesion of probiotic cells with and without optimized 3D scaffold and (2) long-term in-vivo experiments to evaluate the influence of a synergistic combination of an optimized plant-based scaffold composition including oligosaccharides and probiotics in improving high-fat diet-induced metabolic disorders and gut microbiome.

Progress 06/01/23 to 05/31/24

Outputs
Target Audience:The results were disseminated through peer-reviewed publications and meeting presentations, including the Gordon Research Conference and CoFE. In addition, the PI also shared the results with industry members of companies through the campus venture catalyst group and events such as Natural Product Expo. Changes/Problems:There are delays due to the recruitment of postdoctoral scholars to support this project. We plan to submita no-cost extension request. What opportunities for training and professional development has the project provided?The project provided training opportunities to a graduate student, twopostdoctoral fellows, and one project scientist. In addition 4 undergraduate researchers have been engaged in research activities during this period. How have the results been disseminated to communities of interest?The research results were shared through scientific conferences, peer-reviewed publications, and engagement with industries through public events such as Natural product expo presentations by the PI. What do you plan to do during the next reporting period to accomplish the goals?The goals of the next phase are: 1. Complete the pending manuscripts from the year two studies 2. Assessment of the ability of 3D scaffolds and soluble oligosaccharides derived from black beans spent fractions to promote growth and mucoadhesion of probiotics in a simulated colonic environment 3. Optimization of the probiotic biofilm formation on plant-based scaffolds and evaluation of in-vivo persistence

Impacts
What was accomplished under these goals? Novel food products rich in probiotics and prebiotics have significant potential to impact human health. However, the limited viability of probiotics during delivery to the gut and the lack of persistence of these bacteria in the gut significantly limits the success of these novel products. The harsh gastrointestinal conditions reduce the delivery of viable probiotics in food products, and the lack of persistence and growth is constrained by the poor mucoadhesion and availability of selective prebiotics, respectively. To address these challenges our interdisciplinary team is developing plant derived 3D scaffolds for the delivery of probiotics and enhance their persistence in-vivo. In this project period, our interdisciplinary team has made progress in the following goals: (a) Compositional analysis of probiotic biofilm in apple tissue: In our previous report we reported on our discovery of the unique potential of 3D scaffolds with probiotic biofilm to significantly enhance both the survivability and persistence of probiotic cells in-vitro and in-vivo. In this period, we have evaluated the composition of these probiotic biofilms using FTIR spectroscopy and LC-QQQ MS. The results of this analyses reveal significant increase in microbial biomass and associated extracellular biopolymer. The biopolymer fraction was significantly enriched in polysaccharide fraction and the protein fractions based on the results of IR measurement. For the LC-QQQ MS, the team has been optimizing the extraction and characterization process, and developing the analytical standards and the derivatization steps with 1-pheny-3-methyl-5-pyrazolone (PMP) methanolic solution for analysis of the carbohydrate composition of these biofilms. Fourteen monosaccharide standards were successfully resolved chromatographically in a 25 min binary gradient after derivatization, covering the full range of potential building blocks for the biopolymer. Mass spectrometry analysis revealed a varied composition, dominated by glucose, followed by galactose and xylose in comparable quantities, alongside with arabinose and mannose, and lastly, rhamnose and fucose found in lower abundances. (b) Mechanistic understanding of probiotic delivery and the role of structural properties: Many of the probiotic delivery approaches have been evaluated using empirical approaches. To develop a more fundamental understanding, our team has initiated mechanistic modeling of transport, persistence, and attachment of bacteria in the gut. The current model simulates the coupled movement of chyme and the mass transport of bacteria in the gut, including factors such as bulk mobility due to peristalsis and binding interactions with mucin and epithelial tissues. Imaging measurements were conducted to characterize the residual fractions or structure of the 3D scaffold in the gut. For this characterization, the samples of intestinal and cecal isolates from an animal study were imaged. The results reveal a distinct fiber-like morphology in the 3D scaffold in the small intestine, with distributed bacteria along the fiber length. In our next steps, we plan to evaluate the role of these fiber-like morphologies in influencing the distribution of the bacteria in the gut. (c) Optimization of extraction processes from beans and characterization of the spent fractions: One of the goals of this project is to utilize other by-products from the plant protein extraction industries to develop scaffolds for the delivery of probiotics. In this regard our team has been optimizing the extraction process from ground black beans and chickpeas. When these fractions were extracted using a conventional alkaline extraction method (AEP) widely used in the industry to obtain protein concentrates and/or isolates. The TPE of the black bean and chickpea extractions were 19.2 ± 1.5% and 25.3 ± 1.7%, demonstrating that a majority of the pulse proteins remained in the insoluble fraction. The poor extractability is likely due to the large particle size of the ground pulses used in this study. Comparatively, when black bean and chickpea flour were used and extraction was performed under the same conditions, protein extraction yields of 75% (black bean) and 63% (chickpea) were achieved. The residual fractions rich in carbohydrates and residual protein will be further evaluated to develop 3D scaffolds.

Publications

  • Type: Conference Papers and Presentations Status: Published Year Published: 2023 Citation: Nitin N, Plant Biomaterials for Pathogen Control and Promoting Delivery of Probiotics
  • Type: Conference Papers and Presentations Status: Published Year Published: 2024 Citation: Biofilm scaffolds for the delivery of probiotics, COFE, 2024
  • Type: Conference Papers and Presentations Status: Published Year Published: 2024 Citation: 3d scaffolds for the delivery of probiotics, Gordon Research Conference, Lactic acid bacteria,
  • Type: Journal Articles Status: Published Year Published: 2024 Citation: 1. Yang, J. S., Dias, F. F. G., Pham, T. T. K., Barile, D., & de Moura Bell, J. M. L. N. (2024). A sequential fractionation approach to understanding the physicochemical and functional properties of aqueous and enzyme-assisted aqueous extracted black bean proteins. Food Hydrocolloids, 146, 109250. https://doi.org/10.1016/j.foodhyd.2023.109250


Progress 06/01/22 to 05/31/23

Outputs
Target Audience:The target audience includes food manufacturing andnutritional product companies. In addition, the target audience also includes researchers in academic and government laboratories. In this period, the target audiences reached by our efforts include both industry participants and researchers in academic and government laboratories. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project provided training opportunities to a graduate student and a postdoctoral fellow. The postdoctoral fellow was promoted to project scientist in this review period also. How have the results been disseminated to communities of interest?The results were disseminated through peer-reviewed publications and presentations at meetings, including COFE and ACS meetings. In addition,the PI also shared the results with industry members of companies, including Kraft Heinz and Nestle, during their visit to the UCD campus. What do you plan to do during the next reporting period to accomplish the goals?Aim 2:Assessment of the ability of 3D scaffoldsand soluble oligosaccharides derived from apples and black beans spent fractions to promote growth and mucoadhesion of probiotics in a simulated colonic environment Aim 3: Evaluation ofin-vivopersistence and growth of probiotics delivered using the optimizedcompositions of 3Dscaffolds containing probiotics and oligosaccharides and their influence on high-fat diet-induced inflammation

Impacts
What was accomplished under these goals? Assessment of the enhanced survivability of probiotics during simulatedin vitrodigestion using 3D scaffolds derived from apple and black beans extraction byproducts and also promote growth of bacteria in-vitro. In the first year, we focused on evaluating the enhanced survivability of probiotics using 3D scaffolds derived from plant by- products. Our first set of efforts was focused on Apple by-products. This study develops a novel low-cost microbial delivery system by transforming common food materials such as apple tissue into a 3D scaffold. Apple tissue scaffold was constructed by decellularization of intact tissue using a minimal amount of sodium dodecyl sulfate (0.5 % w/v). Vacuum-assisted infusion of model probiotic Lactobacillus cells led to a high encapsulation yield of probiotic cells (1010 CFU/g of scaffold) in 3D scaffolds on a wet basis. The bio-polymer coated 3D scaffolds with infused cells significantly enhanced the survivability of infused probiotic cells during simulated gastric and intestinal digestions. In addition, imaging and plate counting results validate the growth of the infused cells in the 3D scaffold after 1-2 days of fermentation in MRS media, while cells without infusion in the scaffold had limited attachment with the intact apple tissue. Overall, these results highlight the potential of the apple tissue-derived 3D scaffold to deliver probiotic cells and include the biochemical compositions to support the growth of delivered microbial cells in the colon.

Publications

  • Type: Journal Articles Status: Published Year Published: 2023 Citation: Apple-derived 3D scaffold for improving gastrointestinal viability and in-situ growth of probiotics
  • Type: Conference Papers and Presentations Status: Published Year Published: 2022 Citation: Plant derived compositions for improved delivery and persistence of probiotics in the gut, COFE, 2022