Source: UNIVERSITY OF CALIFORNIA, RIVERSIDE submitted to NRP
INTEGRATION OF HOST PLANT RESISTANCE WITH IMMUNITY MODIFICATION FOR MANAGEMENT OF ESTABLISHED AND EMERGING VIRUS THREATS TO MELONS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1026907
Grant No.
2021-70006-35322
Cumulative Award Amt.
$323,106.00
Proposal No.
2021-04951
Multistate No.
(N/A)
Project Start Date
Sep 1, 2021
Project End Date
Jul 31, 2025
Grant Year
2021
Program Code
[ARDP]- Applied Research and Development Program
Recipient Organization
UNIVERSITY OF CALIFORNIA, RIVERSIDE
(N/A)
RIVERSIDE,CA 92521
Performing Department
Entomology
Non Technical Summary
Intensifications of agriculture, global trade, and climate change are driving unprecedented ecological changes, including the emergence of plant-infecting viruses in new locations. These pathogens are responsible for billions of dollars in lost revenue annually and pose threats to native vegetation due to spillover from agriculture. Nutrient-rich specialty crops, such as muskmelons (cantaloupe and honeydew), are particularly prone to losses from plant viruses because virus infection impacts both the amount of fruits produced as well as their appearance, taste, and marketability. Over the last 30 years, muskmelon growers in the US have endured the repeated introduction and establishment of new insect vectors (transmitters of plant viruses) and new viral pathogens. This has resulted in intensive use of insecticides to control insect vectors, leading to negative environmental impacts, high costs, and only marginal virus control. Thus, important economic, ecological, and environmental motivations exist to develop alternative integrated pest management (IPM) approaches to manage the impacts of both viruses and vectors. Our proposed activities will directly address this stakeholder-identified need through testing and validation of resistance-based IPM tools that will provide flexible, sustainable virus control options compatible with reduced risk insecticide programs. We will leverage several years of breeding research, funded by stakeholders, to create new muskmelon cultivars with virus and vector resistance. This will provide solutions for the most important single virus and vector threats. To address emerging virus concerns and established pathogen complexes (groups of co-occurring viruses), we will perform greenhouse trials to evaluate resistant melon performance against these viruses in combination with plant immunity priming ("plant vaccination") as a tool for enhancing resistance and bolstering innate immunity. Finally, to evaluate resistance and priming efficacy, economic feasibility, and potential pesticide reductions, we will carry out field trials and partner with an agricultural economist to produce a cost-return analysis and communicate results to stakeholders. Given the success of our prior work, we anticipate that outputs of this project will significantly improve existing pest management systems and serve as a model for similar virus management approaches in other vegetable crops affected by complicated virus-vector problems.
Animal Health Component
90%
Research Effort Categories
Basic
(N/A)
Applied
90%
Developmental
10%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2161420108170%
2161420102030%
Knowledge Area
216 - Integrated Pest Management Systems;

Subject Of Investigation
1420 - Melons;

Field Of Science
1081 - Breeding; 1020 - Physiology;
Goals / Objectives
Our goal is to improve integrated pest management (IPM) of virus-vector complexes limiting muskmelon production in the U.S. through collaborations among researchers in California and Arizona, which together produce more than 80% of all U.S.-grown melons. This goal will be achieved through the following objectives:Obj. 1. Use novel phenotyping approaches and existing genetic lines to establish the mode of inheritance and map quantitative trait loci associated with resistance to CYSDV and B. tabaci.Obj. 2. Evaluate responses of resistant germplasm to immunity priming and challenge with non-target pathogens (CCYV, CMV).Obj. 3. Quantify economic and environmental benefits of an IPM program using resistant germplasm, immunity priming, and reduced risk insecticides.Our goal and objectives address the specific stakeholder need for robust virus management in melons by providing genetic solutions against two key threats (CYSDV and whiteflies) as well as flexible, immunity-based options to manage established and emerging pathogens (CCYV and mosaic viruses). To accomplish this, we will study the interaction of virus resistance-based solutions (immunity-modifying products and resistant germplasm) with reduced input insecticide programs in desert (AZ) and central valley (CA) melon production regions. To determine if our solutions are cost-effective, we will partner with an agricultural economist to develop a cost-return analysis for use of immunity priming in melons. Given the success of our prior work on diagnostics, breeding, and testing immunity priming, we anticipate that outputs of this project will significantly improve existing pest management systems. At present, melon pest management for viruses focuses on use of prophylactically applied neonicotinoid insecticides for vector control, which are only marginally effective. The most useful active ingredients (dinotefuran and imidacloprid) are slated for possible cancellation due to environmental concerns and stakeholders may soon be without any effective options. Changes in insecticide labeling and availability will also affect virus and vector management in other specialty crops affected by emerging virus and vector complexes (e.g., other cucurbits, tomatoes, peppers, and leafy greens). The solutions that we will test and deliver to growers will therefore serve as a model for similar work to address virus management in other vegetable crops affected by complicated virus-vector problems. Through current collaborations with specialty crop researchers in GA, FL, NC, and SC we are well-positioned to coordinate expanded testing of project outputs in the southeast.
Project Methods
Obj. 1. Use novel phenotyping approaches and existing genetic lines to establish the mode of inheritance and map quantitative trait loci associated with resistance to CYSDV and Bemisia tabaci.Obj. 1a. Determine the modes of inheritance for CYSDV and whitefly resistance in PI 122847 and for whitefly resistance in PI 313970. CYSDV resistance phenotyping will be overseen by co-PD Wintermantel as greenhouse trials with controlled virus exposure. Parents, F1, F2 and backcross (to each parent) progeny will be grown from seed and exposed to CYSDV using whiteflies. Symptoms will be monitored for the next 5 weeks and at week 5, leaf tissue will be collected for titer measurement. The experiment will be run a second time, then rating scale data and virus titer data for each experimental block will be subjected to analysis of variance and protected means separations. Lack of significant differences between the F1 generation and the parent susceptible cultivar ('Top Mark') will be viewed as evidence of a recessive mode of inheritance. This will be confirmed by significant differences between F2 and 'Top Mark' and between backcross generations (BC-TM vs. BC-PI). Whitefly resistance phenotyping will be overseen by PD Mauck as greenhouse trials. To evaluate antibiosis, we will set up a 3-day oviposition by female whiteflies, and the number of eggs deposited will be counted following adult whitefly removal. Adult survival will also be assessed to correct egg counts for the number of females laying eggs. The experiment will be repeated two more times to produce three trials. Egg count data will be analyzed as described for CYSDV phenotyping.Obj. 1b. Identify QTLs for whitefly and CYSDV resistance in PI 122847 and whitefly resistance in 313970. Each experiment will include approximately 200 families from respective F2:3 'Top Mark' x PI crosses. Tissue from the F2 individuals derived from resistant accession x TM crosses will be used for genotyping by sequencing following methods used for QTL analysis of CYSDV resistance previously. DNA will be extracted and prepared to libraries, then sequenced on an Illumina HiSeq 4000 platform. Linkage analysis and QTL mapping will follow previous methods, to include SNP calling and filtering, followed by creation of marker linkage groups having a logarithm of the odds (LOD) value of 3.0 and rmax of 0.3, and calculation of genetic distances. For QTL mapping of CYSDV resistance, we will use mean symptom ratings and mean virus titers (PI 122847), and for QTL mapping of whitefly resistance, we will use mean egg counts (PI 122847 and PI 31970). A permutation test with 1000 iterations will be run to determine the LOD threshold at significance level alpha = 0.05 and 0.01. Based on QTL analysis, flanking markers that differentiate the parents will be selected to pursue for marker assisted selection. Marker utility will be validated by genotyping for homozygosity in F2 families displaying resistance.Obj. 2. Evaluate responses of resistant germplasm to immunity priming and challenge with non-target pathogens (CCYV, CMV).We will evaluate the interaction of immunity priming with CYSDV and whitefly resistance traits and determine benefits for resistance against non-target viruses. Plants will be grown from seeds of the F2:3 families and genotyped at the cotyledon stage using PCR to detect QTL-flanking markers identified in Obj. 1. The two most effective priming agents x dose combinations (elicitor treatment 1 and elicitor treatment 2) will be applied to plants in each genotype category (F2:3's with markers, TM, and CB) at the 3-4 true leaf stage. Initial responses to elicitors will be evaluated relative to controls 3 days following elicitor treatments using rating scales to quantify leaf curling, stunting, discoloration, and necrosis. Plants will then be inoculated with either CCYV or CMV. Disease progression (symptoms) and virus titer will be quantified using methods described above. Each experimental iteration with each virus will be repeated twice and tissue from F2:3 plants will be preserved to pursue further genotyping if needed. A similar experimental set up will test whitefly responses to elicitor treatments (in the absence of virus) using the oviposition assays described in Obj. 1. We will analyze data using mixed general linear models, with separate analyses for whitefly assays and each virus. The predictors will be elicitor treatment and genotype category with experiment date (block) as a random factor. This model will be used to predict the effect on plant responses to elicitor treatment (3 days post application) for all experiments. It will also be used to predict symptom progression, and virus titer for experiments that include viruses, and egg counts for experiments on whitefly resistance.Objective 3. Quantify economic and environmental benefits of an IPM program using resistant germplasm, immunity priming, and reduced risk insecticides.We will use field trials to evaluate the efficacy of lower-risk insecticide inputs alone as well as in combination with priming (Obj. 1-2), on virus susceptibility/tolerance, whitefly abundance, and performance of resistant germplasm. Trials will be carried out twice in the Southern Desert region (AZ, in Spring and Fall growing seasons) and once in the San Joaquin Valley region (late Spring). Each field trial will be established as a split-split in time design with 4 replications. IPM practices will serve as main plots and genotypes as subplots. Main plots will consist of four 30 ft. beds. Subplots will consist of a single bed, 30 ft long, with plants spaced 1.5m apart. Main plot treatments include: High Insecticide, Low Insecticide, Low insecticide + immunity priming, and nontreated control. Subplot treatments will consist of resistant germplasm derived from PI 313970 and PI 122847 as well as one row of 'Top Mark' and one row of a locally adapted commercial cultivar.Aphid and whitefly immature densities will be estimated following each application by sampling. We will quantify virus incidence by recording the number of leaves that expressed symptoms of endemic viruses in each subplot. We will test samples of each plant with multiplex diagnostic RT-PCR to correlate symptoms with virus identities. The multiplex will also reveal any co-infections. Yields will be measured by harvesting/recording the number of mature melons per subplot and classifying by carton size. Percent sugar levels (Brix) for 4 large fruits from each subplot on each harvest date will be recorded. We will analyze data from each season x location separately with replications as blocks, IPM practices as the main plot factor, melon genotype as the subplot 1 factor, and time as the subplot 2 factor. Response variables will include symptom severity, aphid density, whitefly adult numbers, and whitefly egg/nymph densities. For yields, we will perform separate analyses for F2:3 plants and commercial cultivars. Response variables for the commercial cultivar analysis will include melon size categories (# melons in each) and quality (Brix). Post-hoc analyses will be performed to identify benefits of specific practices. Data from field experiments will be integrated into two cost-return analyses for the San Joaquin Valley and Southern Desert areas, to be conducted by Co-PD Sumner in the final year of the project. Findings for each region will be presented in a 20 to 25-page document detailing the expected costs and potential returns. This document will be made freely available through UCCE web resources and will serve as a guide for melon producers to make production decisions, estimate potential returns, prepare budgets and evaluate production loans. It will also provide useful information for farm lenders, land appraisers, government policy makers and other agricultural stakeholders in California.

Progress 09/01/23 to 08/31/24

Outputs
Target Audience:Growers Pest control advisors Agronomists Extension personnel Government researchers Academic (university) researchers Seed industry Students Changes/Problems:The virus complex transmitted by whiteflies continues to grow at an alarming rate. At the same time, our field data indicate that elicitors are most effective against mosaic viruses transmitted by aphids. This is a very important discovery because it allows us to assess the limits of elicitors for control of virus complexes primarily composed of whitefly-transmitted viruses. Our data also clarify that breeding for resistance against whiteflies is probably the better route to address challenges from virus complexes, as this will limit the transmission of multiple viruses. We are therefore focusing our efforts on advancing whitefly resistant germplasm and potentially combining this with elicitors for mosaic virus control, while pausing some work on CYSDV resistant germplasm. What opportunities for training and professional development has the project provided?Three undergraduate students assisted the graduate student with phenotyping. They mastered whitefly phenotyping techniques and plant breeding protocols. One of the undergraduates performed an independent project to evaluate relationships between leaf structure traits (trichomes) and whitefly resistance. The graduate student presented his work to other researchers and successfully completed his qualifying examination. The undergraduate students will be co-authors on forthcoming publications and presentations describing QTL mapping efforts. How have the results been disseminated to communities of interest?Presentations on the project were delivered at grower events, academic meetings, and meetings catering to seed industry personnel. We integrated outputs of project activities with educational efforts of the Emerging Viruses in Cucurbits Working Group (https://ecucurbitviruses.org/). The details of these presentations and stakeholders addressed are listed in the "other products" section of this report. One open access publication was produced for the project during this reporting period and this is listed in the "publications" section of this report. What do you plan to do during the next reporting period to accomplish the goals?For Objective 1 - Complete genotyping by sequencing to identify QTLs and markers associated with whitefly resistance traits in PI 122847 - Continue advancing germplasm for whitefly resistance based on QTL analysis and development of markers For Objective 2 - Evaluate effects of priming on resistance traits in offspring of CYSDV-resistant individuals in the F2:3 population derived from PI 313970 - Evaluate cost effectiveness of implementing elicitors in an IPM program

Impacts
What was accomplished under these goals? Project impact statement Over the last 30 years, muskmelon growers in the US have endured the repeated introduction and establishment of new insect vectors (transmitters of plant viruses) and new viral pathogens. This has resulted in intensive use of insecticides to control insect vectors, leading to negative environmental impacts, high costs, and only marginal virus control. Thus, important economic, ecological, and environmental motivations exist to develop alternative integrated pest management (IPM) approaches to manage the impacts of both viruses and vectors. Our project addresses this need through testing and validation of resistance based IPM tools that will provide flexible, sustainable virus control options compatible with reduced risk insecticide programs. Building on several years of research, funded by stakeholders, we are using traditional breeding techniques to create new muskmelon cultivars with virus and vector resistance, then combining these with immunity priming to improve and broaden resistance traits. During the current project period, we conducted a large-scale phenotyping experiment to identify whitefly resistance traits in a set of wild melon x cultivated melon crosses known as a mapping population. We also made available, through an open-access publication, new tools to drastically improve breeding for whitefly resistance in melon and three additional crops plagued by whitefly attack. We discussed our project with numerous stakeholders, produced publications on our work to inform others of our research, and trained the next generation of agricultural science researchers. Our project activities are key steps to providing a suite of safe, effective tools for virus management. Obj. 1. Identifying resistance to CYSDV and B. tabaci. 1) Major activities CYSDV resistance Activities related to virus resistance focused on further understanding the virus complex into which resistance traits will be deployed. Ongoing stakeholder-supported surveys indicate yet another whitefly-transmitted virus, watermelon chlorotic stunt virus (WmCSV), is now spreading in key melon production areas. Whitefly resistance Phenotyped 1410 individual melon plants in the F2:3 mapping population representing 130 F2 families (mean of 10.8 individuals per family) Phenotyped 47 melon plants of each parent line Extracted genomic DNA from leaf tissues of 126 F2 plants in the mapping population and the two parent lines 2) Data collected and 3) Results CYSDV resistance We completed work on surveys to document new virus incursions into the areas where germplasm will be deployed. Surveys were conducted in the low desert region of CA and AZ in collaboration with partners on this project. Whitefly resistance During the previous project period, the main graduate student working on the project optimized our whitefly phenotyping protocol. During this project period, the student published this novel method in the journal Plant Methods and applied it to phenotyping a mapping population derived from PI 122847 x Top Mark crosses. The methods for phenotyping the mapping population are available in the publication (open access) 4) Key outcomes We identified a new whitefly-transmitted virus spreading throughout the region (WmCSV) and published this finding. We also discussed implications of this discovery in meetings with growers, researchers, and seed industry representatives. Our continued documentation of extensive co-infections among multiple whitefly-transmitted viruses suggests that breeding for whitefly resistance is the better option to pursue because breeding for resistance to one virus will simply create opportunities for other resident viruses to cause similar damage (even with immunity priming). We therefore focused on whitefly resistance breeding, as resistance to the vector will result in reduced infection success for all whitefly-transmitted viruses. We successfully completed phenotyping of the mapping population derived from the melon germplasm with the strongest whitefly resistance (> 1400 plants phenotyped using the new method we developed). Genome sequencing to identify quantitative trait loci associated with resistance is ongoing. Obj. 2. Immunity priming. 1) Major activities We completed testing the efficacy of priming agents under field conditions using conventional cultivars. In previous project periods we documented the efficacy of the commercially available products in the greenhouse and completed some initial field testing. During this project period we repeated field testing of selected products. 2) Data collected and 3) Results Compounds were tested through field applications according to label rates (Regalia) and plant-safe rates established by our group (Actigard) (Kenney et al. Viruses 2020, 12, 257). Plants in treatment plots received two applications of each product spaced out by 7 days, starting at the 1-2 true leaf stage. We previously tested compounds twice in the low desert area, and once in an area with typical Central Valley conditions. During this project period we ran a second experiment in the Central Valley conditions using zucchini yellow mosaic virus (ZYMV) as the challenge pathogen. We hand-inoculated this isolate to plants in plots at the two true leaf stage then assessed symptom incidence and progression over the season, yields, and fruit quality. In 2023 we found that both Actigard and Regalia slowed disease progression and improved fruit quality (sweetness) to fall within acceptable standards (virus infection without elicitor treatments resulted in fruit quality scores below the USDA standard). In 2024, we also saw evidence of reduced symptom expression but did not see the same improvement in fruit quality due to elicitor applications. 4) Key outcomes We confirmed that elicitors attenuate disease symptoms in the field against mosaic virus pressure. However, impacts on yield and fruit quality were variable between 2023 and 2024. In 2024, weather events (heat waves) may have influenced plant responses to elicitor applications, overriding benefits. Abiotic influences on plant responses to virus infection and elicitors should be evaluated moving forward. Obj. 3. Field evaluations/economic analysis. To be addressed in future project periods once resistant germplasm is amplified for field testing.

Publications

  • Type: Peer Reviewed Journal Articles Status: Published Year Published: 2024 Citation: van Raalte, B., Watrous, K., Lujan, M. et al. Evaluation of a low-cost staining method for improved visualization of sweet potato whitefly (Bemisia tabaci) eggs on multiple crop plant species. Plant Methods 20, 75 (2024).


Progress 09/01/22 to 08/31/23

Outputs
Target Audience:Growers Pest control advisors Agronomists Extension personnel Government researchers Academic (university) researchers Seed industry Students Changes/Problems:The phenotyping process for advancement of whitefly resistance has taken longer than anticipated, but this challenge is common in this type of research and is one of the main reasons we do not have commercially available cultivars of any crop with whitefly resistance. During the project period, our efforts to improve phenotyping by oviposition measurements revealed remarkable inconsistencies in egg counting when eggs are not stained to improve visualization. As all previous applications of egg counting for phenotyping use unstained eggs, this is likely reducing heritability and impeding germplasm advancement. We are confident that investing time in improving this approach will have broad benefits for our project and the other crops on which we validated the approach (tomato, cowpea, sweet potato, and casava). The main downside of this delay is that we have not yet tested germplasm from our lines in the field alone or with elicitors. However, due to the quality of the graduate student involved in the project, we have been able to obtain merit-based support from UCR programs for student salaries for all but two summer periods. As a result, we have not only the trained personnel but also the funds to continue the project with a no-cost extension period should this be required to complete field experiments. We also continue to receive in-kind support from stakeholders, including the California Melon Research Board, who are very interested in seeing this germplasm deployed and incorporating elicitors into their management approaches. What opportunities for training and professional development has the project provided?One graduate student mastered whitefly phenotyping techniques and plant breeding protocols. This graduate student presented his work at numerous venues and engaged in conversations about the project with all stakeholder groups indicated on this report. The graduate student secured a one-year internal fellowship based on his performance, as well as merit-based funding from the UC Riverside graduate division and a UCR Department of Entomology US Dept. of Education grant. Two undergraduate students were trained in whitefly phenotyping protocols and both students will be co-authors on a forthcoming publication. How have the results been disseminated to communities of interest?Presentations and posters on the project have been presented at grower events, academic meetings, and meetings catering to seed industry personnel. The details of these presentations and stakeholders addressed are listed in the "other products" section of this report. Publications are listed in the "publications" section of this report. What do you plan to do during the next reporting period to accomplish the goals?For Objective 1 - Advance the six resistant lines derived from PI 122847 through production of fruit/seeds - Perform genotyping by sequencing to identify QTLs and markers associated with resistance traits in PI 122847 - Complete phenotyping of F1, F2, and backcross lines of PI 122847 and PI 313970 for whitefly resistance - Perform genotyping by sequencing to identify QTLs and markers associated with whitefly resistance traits For Objective 2 - Evaluate effects of priming on resistance traits in offspring of CYSDV-resistant individuals in the F2:3 population derived from PI 313970

Impacts
What was accomplished under these goals? Project impact statement Over the last 30 years, muskmelon growers in the US have endured the repeated introduction and establishment of new insect vectors (transmitters of plant viruses) and new viral pathogens. This has resulted in intensive use of insecticides to control insect vectors, leading to negative environmental impacts, high costs, and only marginal virus control. Thus, important economic, ecological, and environmental motivations exist to develop alternative integrated pest management (IPM) approaches to manage the impacts of both viruses and vectors. Our project addresses this need through testing and validation of resistance based IPM tools that will provide flexible, sustainable virus control options compatible with reduced risk insecticide programs. Building on several years of research, funded by stakeholders, we are using traditional breeding techniques to create new muskmelon cultivars with virus and vector resistance, then combining these with immunity priming to improve and broaden resistance traits. During the current project period, we identified six more advanced breeding lines with virus resistance and evaluated priming compounds for efficacy against different virus pathogens under field conditions. We also performed final validation of tools to drastically improve breeding for whitefly resistance in melon and three additional crops plagued by whitefly attack. We discussed our project with numerous stakeholders, produced publications on our work to inform others of our research, and trained the next generation of agricultural science researchers. Our project activities are key steps to providing a suite of safe, effective tools for virus management. Obj. 1. Identifying resistance to CYSDV and B. tabaci. 1) Major activities CYSDV resistance 1. Screen parents and F1, F2, and reciprocal backcross populations for resistance to infection and systemic spread by CYSDV. During this project period we focused on lines derived from PI 122847, along with advanced breeding lines developed from PI 313970, which are also used as a comparative resistance source. 2. Screen parents and F2:3 families for resistance to infection and systemic spread by CYSDV. Completed screening of F2:3 families derived from PI 122847 (see data collected below). Resistance markers identification is in progress. Whitefly resistance 1. Screen parents and F1, F2, and reciprocal backcross populations for resistance to whiteflies. This work is on hold while we completed validation of the oviposition method for phenotyping. A graduate student completed this validation and produced a manuscript draft that is ready for submission. The manuscript draft is being reviewed by his academic committee members (a requirement of our graduate program) prior to submission to the journal Plant Methods. 2) Data collected and 3) Results CYSDV resistance Evaluations focused on evaluating F2:3 lines of the accession PI 122847, which showed high resistance to CYSDV in the laboratory and field. We also screened lines derived from PI 414723, which shows CYSDV tolerance. Screening methods followed those described in the report for the prior project period. Six lines derived from PI 122847 showed strong CYSDV resistance as measured by quantitative RT-PCR. Marker identification for these lines is in progress. Six lines derived from PI 414723 showed reduced virus titers relative to the susceptible control but were still infected. Based on these results, lines from PI 122847 are the most promising for advancement. In addition to breeding-related activities, we completed work on surveys to understand the dynamics of CYSDV and a related crinivirus, CCYV, in areas in which germplasm will be deployed. We collected a portion of the samples for this work during the prior project period (Fall 2021) and in this project period, completed a manuscript documenting CYSDV-CCYV co-infection dynamics (Mondal et al. 2023). Whitefly resistance During the previous project period, we recruited and trained a graduate student. The student identified several areas of the phenotyping approach that needed improvement, which were detailed in the previous project period report. During this project period, the student addressed all of these issues and optimized the protocol. The student created new clip cage designs for housing whiteflies during trials, improved whitefly handling and rearing protocols to produce sufficient numbers of females, optimized whitefly sexing protocols, designed handling protocols to increase throughput, evaluated a staining procedure that significantly increases egg counting precision, and demonstrated that our phenotyping workflow is especially effective for melons, but can be applied to numerous crops. The student will shortly submit this work for publication in the journal Plant Methods. We used this phenotyping method to validate resistance in parent PIs and explore age-related changes in resistance among parent PIs. Our results indicate that resistance in TGR-1551 is minimal and not easily phenotyped using our method or traditional, low throughput methods. Therefore, we will focus on PI 122847 and PI 313970. 4) Key outcomes Our project activities advanced six additional breeding lines for CYSDV resistance derived from accession PI 122847. We clarified and communicated virus community dynamics as they relate to the durability and usefulness of single virus resistance in elite germplasm. Phenotyping protocols were optimized and finalized for use with melons. A manuscript on the new phenotyping protocol is ready to submit pending final suggestions from the student first author's committee members. Obj. 2. Immunity priming. 1) Major activities As we await completion of CYSDV-resistant lines for field experiments, we continued to test the efficacy of priming agents under field conditions using non-resistant cultivars. In the previous project we documented the efficacy of the commercially available Actigard and Regalia products in the greenhouse. During the project period covered by this report, we tested these in the field. 2) Data collected and 3) Results Compounds were tested through field applications according to label rates (Regalia) and plant-safe rates established by our group (Kenney et al. Viruses 2020, 12, 257). Plants in treatment plots received two applications of each product spaced out by 7 days, starting at the 1-2 true leaf stage. Compounds were tested twice in the Southern desert area (Fall planting and Spring planting) and once in a production area typical of Central Valley conditions. For desert experiments, crinivirus pressure was sufficient for field testing without intervention. For the experiment in the non-desert environment, disease pressure is variable. Therefore, we collected and amplified a local isolate of a mosaic virus that causes losses in the Central Valley region (ZYMV) and hand-inoculated this isolate to plants in plots at the two true leaf stage. We assessed symptom incidence and progression over the season, yields, and fruit quality. We found that elicitors had little effect on disease outcomes for a virus-susceptible cultivar under the high crinivirus inoculum pressure present in the Southern desert production areas. In contrast, for the experiment with ZYMV pressure, both Actigard and Regalia slowed disease progression and improved fruit quality (sweetness) to fall within acceptable standards (virus infection without elicitor treatments resulted in fruit quality scores below the USDA standard). 4) Key outcomes We determined the efficacy of elicitors under field conditions and against specific types of viruses. Our results suggest that elicitors should have the strongest benefits when combined with virus or vector resistant germplasm in areas affected by mosaic viruses in the genus potyvirus. Obj. 3. Field evaluations/economic analysis. To be addressed in future project periods once CYSDV-resistant germplasm is amplified for field testing.

Publications

  • Type: Journal Articles Status: Published Year Published: 2023 Citation: Mondal, S., Jenkins Hladky, L., and Wintermantel, W.M. 2023. Differential seasonal prevalence of yellowing viruses infecting melon crops in southern California and Arizona determined by multiplex RT-PCR and RT-qPCR. Plant Disease 107: 26532664.


Progress 09/01/21 to 08/31/22

Outputs
Target Audience:Growers Pest control advisors Agronomists Extension personnel Government researchers Academic (university) researchers Seed industry Students studying entomology, plant pathology, and plant breeding Changes/Problems:We experienced some slight delays in finalizing breeding lines for whitefly resistance phenotyping. These are now completed. We identified some areas of the whitefly phenotyping protocol that required improvement as we attempted to scale up this protocol to much larger experiments. We also identified the presence of age-related resistance against whiteflies in at least one breeding line. These findings caused us to revisit the phenotyping protocol to implement improvements and to revise experiment protocols to incorporate a time series element (which will lengthen the duration of each experiment). Additionally, we are performing experiments to determine if we can use immunity priming as a means of eliciting resistance traits at earlier phenological stages of plant development. Although the overall progress of whitefly resistance phenotyping has been delayed by these discoveries, addressing them ensures that we can consistently and accurately phenotype material, which is necessary for advancing breeding lines with these traits and evaluating responsiveness to priming products. Additionally, revision of the phenotyping protocol will lead to an additional publication providing guidance and tools (e.g., software) for using this protocol in other specialty crops. What opportunities for training and professional development has the project provided?One graduate student was trained in whitefly phenotyping techniques and plant breeding protocols. Two graduate students attended the Fall Vegetable Crops Update and the Emerging Viruses in Cucurbits Working Group meetings and participated in conversations with stakeholders about virus problems, solutions, and future challenges. Two undergraduate students were trained in virus handling/inoculations, diagnostics, and phenotyping How have the results been disseminated to communities of interest?Progress on the project was discussed with representatives of the specialty crop industry in California at the Specialty Crop Technical Council meetings (Mauck - grower/policymaker audience), the Entomological Society of America Annual meeting (Co-PI Wintermantel - academic/researcher audience), the Cucurbitaceae meeting (Wintermantel - seed industry, academic/researcher audience), the International IPM Symposium (Mauck - academic/researcher audience), and the CA Melon Board virtual symposium (Mauck - grower audience). Project progress discussion was also part of activities of the Emerging Viruses in Cucurbits Working Group (Mauck, Wintermantel). This group includes researchers, government/policymakers, and industry representatives. An extension presentation that covered some aspects of this project (plant priming, emerging viruses) was delivered to growers, pest control advisors, and agronomists at the Fall vegetable crops update held in Five Points, CA (Mauck, Wintermantel). What do you plan to do during the next reporting period to accomplish the goals?For Objective 1 - Complete CYSDV resistance phenotyping of F1, F2 and backcross lines of PI 122847 - Perform genotyping by sequencing to identify QTLs and markers associated with resistance traits in PI 122847 - Finish production of fruit from select CYSDV-resistant individuals in the F2:3 population derived from PI 313970 - Complete phenotyping of F1, F2, and backcross lines of PI 122847, PI 313970, and TGR-1551 for whitefly resistance - Perform genotyping by sequencing to identify QTLs and markers associated with whitefly resistance traits For Objective 2 - Evaluate effects of priming on resistance traits in offspring of CYSDV-resistant individuals in the F2:3 population derived from PI 313970 - Determine how priming affects the magnitude and timing of resistance against whiteflies

Impacts
What was accomplished under these goals? Project impact Over the last 30 years, muskmelon growers in the US have endured the repeated introduction and establishment of new insect vectors (transmitters of plant viruses) and new viral pathogens. This has resulted in intensive use of insecticides to control insect vectors, leading to negative environmental impacts, high costs, and only marginal virus control. Thus, important economic, ecological, and environmental motivations exist to develop alternative integrated pest management (IPM) approaches to manage the impacts of both viruses and vectors. Our project addresses this need through testing and validation of resistance based IPM tools that will provide flexible, sustainable virus control options compatible with reduced risk insecticide programs. Building on several years of research, funded by stakeholders, we are using traditional breeding techniques to create new muskmelon cultivars with virus and vector resistance, then combining these with immunity priming to improve and broaden resistance traits. During the current project period, we identified advanced breeding lines with virus resistance and screened priming compounds for efficacy against different virus pathogens. We also refined a method for evaluating resistance against vectors and are working to make this available for use in other crops. Our project activities are key steps to providing a suite of safe, effective tools for virus management. Obj. 1. Identifying resistance to CYSDV and B. tabaci. 1) Major activities CYSDV resistance 1. Screen parents and F1, F2, and reciprocal backcross populations for resistance to infection and systemic spread by CYSDV. Lines proposed for evaluation through these experiments include those derived from PI 122847, along with advanced breeding lines developed from PI 313970, which are also used as a comparative resistance source. Screening of PI 122847 is in progress. 2. Screen parents and F2:3 families for resistance to infection and systemic spread by CYSDV. Completed for F2:3 families derived from PI 313970 (see data collected below). Resistance markers have been identified for breeding lines derived from this accession and these facilitated exploration of relationships between the previously identified QTL and resistance traits. Whitefly resistance 1. Screen parents and F1, F2, and reciprocal backcross populations for resistance to whiteflies. Crosses were completed to produce F2:3 families derived from three sources of whitefly resistance (PI313970, PI122847, and TGR-1551). A graduate student was recruited and trained on methods for phenotyping whitefly resistance. Methods for whitefly resistance that we previously developed were refined. 2) Data collected and 3) Results CYSDV resistance Evaluations focused on evaluating F2:3 lines of the most promising source of resistance that is closest to commercialization - PI 313970. Screening of the next most promising line (PI 122847) is currently in progress. Whiteflies were provided an acquisition access period (AAP) of 48 hours on the CYSDV-infected source plants. Clip cages containing 50 viruliferous whiteflies were attached to the underside of melon seedlings for a 48-hour inoculation access period (IAP). Following transmission, plants were treated to remove whiteflies then transferred to cages in growth chambers, and CYSDV titer was evaluated by RT-qPCR at 6 weeks post inoculation. Plants with low titers and limited or no symptoms were transferred to a whitefly-proof cage in a greenhouse for further development and for collection of fruit, with continued sampling for virus titer every 21 days. All susceptible plants (Top Mark) were symptomatic and infected. Several plants of different 313970 progeny lines were promising because virus was not detected, foliar symptoms were absent, and one or both markers for the resistance locus were present. For example, a few plants of F2:3 line 36902 had low CTs indicating virus accumulation; however, most lines exhibited high CTs indicating these plants did not become infected with CYSDV. Other promising progeny were also identified from this cross and are being propagated for further evaluation. In general, virus accumulation and symptom expression were reduced in plants with one or both putative markers and heterozygous lines. Low-titer plants with flanking PI 313970 markers and asymptomatic/mild symptoms will be advanced to the next generation. Whitefly resistance Crosses to produce advanced breeding material were completed by collaborator McCreight. Whitefly phenotyping is in an earlier stage than CYSDV phenotyping for all lines. We previously developed an oviposition-based resistance phenotyping approach and validated this with the use of externally applied resistance elicitors. Female whiteflies extract fewer nutrients from resistant plants and produce fewer eggs within a defined area, which can be counted by the researcher. This method is a large improvement over prior methods. We recruited/trained a graduate student with phenotyping experience to carry out this approach on the completed lines. However, the student noticed some areas that needed improvement to ensure accuracy. Optimization of egg counting - the student optimized a mid-throughput staining procedure to visualize eggs laid on melon leaves. Staining improves accuracy of egg counts and allows photographing for automated egg counting. The student also trialed different photography techniques and equipment set ups to identify one that accurately shows all eggs in the field of view (stacked images). Automation of egg counting - the student wrote and tested a computer program to automate egg counting. The student identified features associated with eggs and trained the program to be able to discriminate eggs from residual leaf features that did not fully clear during staining. Optimization of whitefly synchronization/mating - the student improved methods for synchronizing emergence of female whiteflies and ensuring mating status prior to use in experiments. Identification of plant age as a factor underlying the magnitude of whitefly resistance in melon - The student used parental germplasm of TGR-1551 to validate phenotyping method progress. The student discovered that for this accession, plant age plays a role in the strength of whitefly resistance. This is an important discovery as it changes our phenotyping approach to include a time series element. 4) Key outcomes Our project activities produced knowledge toward advancement of breeding lines for CYSDV resistance and phenotyping for whitefly resistance. Whitefly resistance phenotyping methods will be published and can be used for other specialty crops (anticipated Spring 2023). Obj. 2. Immunity priming. 1) Major activities We screened five priming agents for efficacy in preventing infection and/or attenuating symptoms/titer of CYSDV and a mosaic virus (zucchini yellow mosaic virus). 2) Data collected and 3) Results Plants were treated with elicitors then challenged with virus infection by vector inoculation (for CYSDV) or rub inoculation (ZYMV). We collected data on infection rates, symptom severity, and virus accumulation in plants (titer). Actigard, Regalia, and a laminarin formulation all reduced symptom severity. No compound fully prevented infection. We will focus on using these active ingredients and evaluate against additional viruses. We also found that priming is more effective during warmer periods with longer day lengths of natural sunlight. We will follow up on this work with additional experiments in ensuing project periods. We will also evaluate efficacy of priming agents as inducers of resistance against whiteflies. 4) Key outcomes We identified which priming agents and pathways are active against viruses, and variation in efficacy due to seasonality. This knowledge is necessary for selecting the right options for IPM practices. Obj. 3. Field evaluations/economic analysis. To be addressed in future project periods.

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