Source: INDIANA UNIVERSITY submitted to
QUANTIFYING SPECIES-SPECIFIC PHENOLOGICAL VARIABILITY AND THE IMPACTS ON TREE GROWTH AND FOREST CARBON AND WATER CYCLING
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
1026401
Grant No.
2021-67034-35129
Project No.
INDW-2020-10081
Proposal No.
2020-10081
Multistate No.
(N/A)
Program Code
A7101
Project Start Date
Jun 15, 2021
Project End Date
Jun 14, 2023
Grant Year
2021
Project Director
Denham, S.
Recipient Organization
INDIANA UNIVERSITY
JORDAN HALL 142
BLOOMINGTON,IN 47401
Performing Department
O`Neill SPEA
Non Technical Summary
The timing of phenological events (spring leaf emergence) exerts strong control over exchanges of carbon, water, and energy between the land surface and the atmosphere at the stand scale. Spring leaf emergence initiates the deciduous forest's growing season and represents a significant driver of ecosystem productivity, soil resource acquisition, and carbon dynamics. Observations of stand-scale phenology, from remote sensing and repeat digital imagery networks have substantially advanced our understanding of the variability in phenological timing. However, while the importance of stand-level phenology on ecosystem processes is clear, we have a very limited understanding of intra- and inter-specific variability in species-level phenology.Understanding how tree species respond to these changes is critical for understanding future forest ecosystem services including protection of soil and water resources and mitigation of climate change. Most studies to date have been focused on responses at the forest scale, with much less attention given to the species-specific responses, which is a significant gap because species respond differently to environmental change. Species that leaf out earlier may have a competitive advantage in terms of carbon uptake leading to increases in growth in some species and decreased growth for others. This has implications for the value of the timber being harvested in a forest stand, depending on whether the higher or lower value timber species are experiencing increased growth. However, any advantage in carbon gain may come with disadvantages to the water budget. If high water users are leafing out earlier with warmer springs, this could reduce summer water supply in years with less precipitation which will potentially lead to water shortages for human populations living downstream, depending on surface water supply.By leveraging existing networks including digital imagery of forest canopies, tree-ring chronologies, and carbon and water cycling, I will quantify species-specific leaf phenological variability and determine the role this varibility has in tree growth, carbon, and water cyling dyanmics. Individual tree species will be identified within the digital image of the canopy by use of a UAV affixed with a digital camera that will be flown above the forest canopy. Visual inspection and integration of forest tree species identification into the existing digital image of the canopy will allow for the development of a species-specific time series of leaf phenological transitions. Once these transitions are extracted, I will assess the effect of the interannual variability in spring leaf emergence date on variability in basal area increment, gross primary productivity, and evapotranspiration.By evaluating completing these methods, I will devlop a framework to systematically assess species-level phenological transitions for use by anyone with access to the Phenocam network. I will provide information to forest managers regarding how shifting phenological patterns are affecing tree growth across species to better inform forest policy and land management practices under a future characterized by a warming climate.
Animal Health Component
0%
Research Effort Categories
Basic
90%
Applied
10%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
20306201070100%
Goals / Objectives
The major goals of this include understanding how species-specific leaf phenological variability affects interannual variability on tree growth and elemental (carbon, water, and energy) cycling, and to provide a framework for a systematic and scalable approach for species-level leaf phenological observations, allowing for the application of this approach anywhere where these data are available. Additionally, I aim to use insight gleaned from this project to communicate the impacts of environmental change of forest structure and composition to assist in making informed decisions about future forest policy and management decisions.Objectives: 1) quantify variability within and across species in spring leaf phenological events across multiple forests stands in the eastern US; and, 2) determine how phenological variation affects tree growth (increase, decrease, no change) and covaries with carbon water, and energy cycling.
Project Methods
Collect and synthesize community science data efforts from National Phenology Network and National Ecological Observatory Network. Quantify species leaf emergence variability from ground observations. Collate Phenocam images and select individuals/ species within 'master' image to track phenophases. Extract RGB digital numbers to assess change in % greenness, with particular focus to spring leaf emergence. Collect and synthesize data from selected eddy-covariance flux towers. Quantify interannual and intra-annual variability of evapotranspiration and gross primary production. Travel to field sites to fly a UAV equipped with a digital camera to identify canopy tree species within the viewshed of the Phenocam. Incorporate aerial species identification into Phenocam images. Develop species-specific timeseries of phenological transitions. Quantify species leaf emergence variability across the canopy. Develop code for extracting the "start of spring" for each species present in the forest canopy and train undergraduate student. Explore flux tower data to investigate how variable spring start dates influence variability in carbon and water cycling. Determine variable spring start dates on magnitude of tree growth for each canopy species across sites. Annual basal area increment (BAI) will be estimated using tree-ring chronologies of each species. Pearson correlations will be computed to assess relationships between climate spring transition date and BAI. Evaluate relationships between spring leaf emergence metrics and ecological fluxes. Evaluate implications of oak decline and forest compositional shifts.

Progress 06/15/21 to 06/14/23

Outputs
Target Audience:The target audience included research ecologists, computer scientists, prospective researchers, and the public. This project aimed to draw attention to the utility of using digital imagery to investigate ecological questions and to engage "community scientists" with the work. This allowed formulti-disciplinary research objectives while simultaneously doing outreach to the broader public. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?I mentored several undergraduate and graduate students throughout the project. One is now working on her senior thesis which will incorporate and extend much of the research we did together. She is now considering moving on to graduate school after her undergraduate degree is conferred. The graduate students that I worked with have since maintained a presence in the lab group I was a part of. I have since obtained a postdoctoral position with the USDA-ARS where I received a performance award in my first 70 days of employment for my "substantial contributions to the research goals" of my group. A lot of my efficiency in research was developed and fostered during the NIFA project as I was developing the workflow from scratch while also scheduling the students who I was mentoring and wrapping up my dissertation. These were valuable skills that I am now providing to the very agency that has invested in me, the USDA. How have the results been disseminated to communities of interest?These results have been presented at national conferences (American Geophysical Union), within my home university (Indiana University) as a seminar, and my public defense of my dissertation. The work has also been published in the Journal of Geophysical Research: Biogeosciences, and a portion of the work will be included in a publication in Global Ecology and Biogeography. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? We were able to determine which tree species leaves consistently emerged earlier in the season than co-dominant species which allows both an advantage for greater carbon uptake but also increases the risk of suffering tissue damage during a late frost. Our approach influenced other researchers in the realm of computer science to refine the methodology, improving the ability to investigate phenological variability across vegetation communities.

Publications

  • Type: Journal Articles Status: Published Year Published: 2023 Citation: Denham, S.O., Barnes, M.L., Chang, Q., Korolev, M., Wood, J.D., Oishi, A.C., Shay, K.O., Stoy, P.C., Chen, J. and Novick, K.A., 2023. The rate of canopy development modulates the link between the timing of spring leaf emergence and summer moisture. Journal of Geophysical Research: Biogeosciences, p.e2022JG007217.


Progress 06/15/21 to 06/14/22

Outputs
Target Audience:This project has included the assistance of three undergraduate students who have collected on the ground observations of dominant tree species in one of the four proposed research sites. This information will be vital for the ground truthing process once analysis of near-surface digital imagery has been complete. One of these students has initiated a manscript relating some of the field observations to various topographical positioning (e.g., slope, aspect). Results have been presented to a lab group at Indiana University. Preliminary results of phenological timing and the extent to which this controls dynamics of soil moisture have been presented at American Geophysical Union annual meeting and as seminar series to the Environmental Science group at the O'Neill School of Public and Environmental Affairs (O'SPEA). Moving forward, it is expected that this work will be presented at least once more for O'SPEA faculty and student as well as publicly, manuscripts will be prepared including a methods paper for the broader community to incorporate at other sites that are equipped with near-surface digital imagery and eddy-covariance flux towers. Changes/Problems:Identifying tree canopies by flying a drone was much more difficult than originally thought. To address this, I leveraged use of a bucket-truck and affixed brightly colored mylar balloons to tree canopies of known species, then we identified the balloon in the image and were thus able to identify individual and species in the digital image. I will plan on coming up with a strategy to use drone images to identify more individual trees; however I wanted to make sufficient progress towards my goals in a timely manner. Traveling to other sites has been an issue due to COVID, however, I have been in contact with support personnel and including other sites will hopefully be acheived over this next year. What opportunities for training and professional development has the project provided?I have been able to learn a new coding language (R), I have learned various ways to analyze digital imagery. While learning this software myself, I have been able to train my undergraduate mentees in how to execute certain functions as well. How have the results been disseminated to communities of interest?Some preliminary results were presented to a lab group as well as publicly during aseminar series oral presenation at Indiana University. These preliminary results were also included in an oral presentation given at the AGU annual meeting. What do you plan to do during the next reporting period to accomplish the goals?I will begin to invesitigate the variability in ecosystem processes using carbon and water flux data. This will allow me to determine the individual contributions of different tree species to the variability in water and carbon cycling.

Impacts
What was accomplished under these goals? Using 12-years of half-hourly near-surface digital imagery, I have obtained seasonal signals of canopy greenness (and thus phenological variability) for 17 individual treecanopies comprising 5 different species. With this information, I have been able to determine a "start of season" for each of the 17 canopies to assess within and across species variability in green-up, as well as how this varies annually. I have collected on-the-ground phenological observations at four co-located mixed deciduous broadleaf forests with each site containining ~100+ individual trees of various species. These observations have been contributed to the National Phenology Network through thier Nature's Notebook app. I have coordinated with individuals working with a non-profit organization to have the four sites in Indiana be entered as permanent sites within the Nature's Notebook app so that anyone can contribute phenological observtions through this portal as part of the broader "citizen-science" community.

Publications