Progress 10/01/19 to 09/30/20
Outputs Target Audience:Individuals that were reached by our efforts during the reporting period included the following: Greenhouse and nursery producers; Landscapers/Arborists; Homeowners; Master Gardener Volunteers; Ohio State University Extension personnel, educators and assistants; Undergraduate students Graduate students Changes/Problems:Due to COVID-19 shutdown of all on farm research activities during Spring 2020, the field component of this project is currently delayed. What opportunities for training and professional development has the project provided?
Nothing Reported
How have the results been disseminated to communities of interest?In addition to the scientific conferences listed in the Publication section of this report, results of this project have been presented as a 2-hour webinar to Winterberry Nursery Growers on 2/25/2020 What do you plan to do during the next reporting period to accomplish the goals?In the next reporting period we will continue the development of genomic resources to study host-pathogen interactions in the Diaporthe ilicicola-winterberry pathosystem. The genome we sequenced this yearwill be annotated and serve as reference for future gene expression work (Obj. 3). If field season is not further impacted by the COVID-19 pandemic, we will set-up and conduct the cultivar susceptibility and/or fungicide trials (Obj. 2 and 4) Metaboloimic analyses will be conducted with fruit extracts collected during the growing season (Obj. 1)
Impacts What was accomplished under these goals?
Activities for this reporting period have focused on objective 1 and 3. Due to shutdown of all on farm research activities during Spring 2020, the field component of this project is currently delayed. Objective 1: To understand pathogen-host interactions in the fruit rot disease of deciduous holly Effects of temperature on spore germination and hyphal growth of fungi associated with latent fruit rot in deciduous holly (Ilex spp.) Isolates of Diaporthe ilicicola (FPH2015-598; FPH2016-671; FPH2016-702), Alternaria alternata (FPH2015-597), Epicoccum nigrum (FPH2015-417) and Colletotrichum fioriniae (FPH2016-462) representative of different Ilex cultivars and geographical locations of isolation, were grown on PDA at room temperature with a 14h photoperiod for three weeks. Hyphal growth assay. 4mm mycelium plugs were excised from the three-week-old plates and transferred to fresh PDA. Plates were then placed in incubators set at 5, 10, 15, 20, 25, 30 and 35?C in a split-plot randomized complete block design with three blocks in each plot (temperature treatment). The diameter of the fungal colony was measured from the edge of the mycelium plug in each plate by averaging the length of two perpendicular cross sections twice a week for three weeks. The experiment was conducted twice. Spore germination assay. Spores were collected from the three-week-old plates and suspended in sterile water at a concentration of 105 spores/ml. Three 5??L drops were placed on a PDA plate and incubated at temperature treatments 5, 10, 15, 20, 25, 30 and 35?C. Germination and hyphal growth was halted at 2, 4, 8, 12 and 24 h following plating by flooding plates with lactophenol aniline blue. Percent germinated spores was calculated by counting the number of germinated spores out of 50 randomly selected spores. Spores were considered germinated when the germination hyphae length reached 1x the spore length. The experiment was conducted twice. Data Analysis. The area under the hyphal growth and spore germination progress curves were calculated in Microsoft Excel (Madden & Nutter, 1995). Temperature treatment effects were analyzed by ANOVA and means separation was done using Tukey's HSD (??=0.05) using R v. 3.6.3. The strong negative correlation between temperature and symptoms development observed by Ilex growers and in research field trials between 2016-2019 prompted these experiments, which investigated the effect of cold temperature on the fungi causing latent fruit rot in deciduous holly (Lin et al., 2019; Emanuel & Peduto Hand, unpublished data). Results indicate that Diaporthe ilicicola spore germination and hyphal growth rates are significantly decreased below 15°C and almost completely inhibited at 5°C. Compared to the Diaporthe ilicicola isolates, the other fungi in the complex are faster to germinate and grow at most of the temperature treatments, but are also significantly inhibited at temperatures at and below 15°C, with a few notable exceptions: Colletotrichum fioriniae has an optimal hyphal growth temperature range of 15-30°C and Epicoccum nigrum has an optimal germination temperature and hyphal growth range of 10-35°C, respectively. Based on these results, Epicoccum nigrum has the potential to take advantage of drops in field temperatures, but the other fungi do not share this innate psychrotrophic characteristic. Published work on this system indicate that Diaporthe ilicicola and Alternaria alternata are key players in the development of this disease so the decreased ability of these pathogens to grow at temperatures below 15°C suggest that temperature alone is not responsible for late-season symptoms development. Objective 3.To develop genomic resources to obtain insights into D. ilicicola's lifestyle Transformation of Diaporthe ilicicola (FPH2015-598) with tdTomato Agrobacterium tumefaciens containing a pBH plasmid with tdTomato was grown in LB + rifampicin (50 ug/mL) + gentamicin (15 ug/mL) + kanamycin (50 ug/mL) for two days at 28C.The bacterium was washed and resuspended in LB to an OD600 of 0.2. Acetosyringone was added to the bacterial suspension to a final concentration of 200uM and bacteria were incubated on a shaking apparatus at 150rpm at 28C for 5 hours. Following incubation, spores of D. ilicicola isolate FPH2015-598 were collected and suspended in sterile water to a concentration of ~106 spores/mL. 100uL of bacterial suspension was combined with 100uL of spore suspension and the co-culture was centrifuged at 2500 xg for 5 minutes to create a pellet. Supernatant was removed until ~50uL remained. The pellet was resuspended in the supernatant and all 50uL were plated atop a sterile cellophane circle placed on 0.1x PDA amended with acetosyringone (200uM). Plates were incubated at room temperature under ambient light for 2-5 days until mycelia could be seen growing on the cellophane. Cellophane containing the co-culture was removed and cut into four equal sized pieces using sterile scissors and forceps. Sections of cellophane were then placed on fresh PDA containing hygromycin B (25-50 ug/mL)+ Cephalexin (25ug/mL). Plates were incubated at room temperature under ambient light until hyphae could be seen growing from the cellophane into the selective media. Hyphal tips were sub-cultured onto PDA + hygromycin B (25-50ug/mL) and grown for 3-5 days. Sub-cultured isolates were screened for red fluorescence using an epifluorescent microscope. Genome assembly Diaporthe ilicicola (FPH2015-502) was sequenced using Illumina MiSeq (long reads) and minION (short reads) and assembled on the Ohio Super Computer (OSC). Read quality was checked using fastQC and sequences were trimmed using trimmomatic. Assemblies were created using SPAdes and the quality of full genome assemblies were checked against a reference genome of Diaporthe helianthe(retrieved from the NCBI database) using QUAST.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Farinas, C, Jourdan, P, Paul, PA, Slot, JC, Daughtrey, ML, Devi Ganeshan, V, Baysal-Gurel, F, Peduto Hand, F. (2020). "Phlox species show quantitative and qualitative resistance to a population of powdery mildew isolates from the Eastern United States". PHYTOPATHOLOGY 110(8): 14101418
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Wolff, P. B., Nielsen, M. L., Slot, J. C., Andersen, L. N., Petersen, L. M., Isbrandt, T., ... & Hoof, J. B. (2020). Acurin A, a novel hybrid compound, biosynthesized by individually translated PKS-and NRPS-encoding genes in Aspergillus aculeatus. Fungal Genetics and Biology, 103378.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Baysal-Gurel, F, Farinas, C, Peduto Hand, F, Avin, F. (2020). First report of powdery mildew of Phlox caused by Golovinomyces magnicellulatus in Tennessee. PLANT DISEASE 104(8): 2294-2294
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
South, KA, Peduto Hand, F, Jones, ML. (2020). "Beneficial bacteria identified for the control of Botrytis cinerea in petunia greenhouse production". PLANT DISEASE 104(6): 1801-1810.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Farinas, C, Henderson E, Peduto Hand, F. (2020). Evaluation of foliar fungicides in a preventative or curative program for control of powdery mildew on garden Phlox, 2019. PLANT DISEASE MANAGEMENT REPORTS. Vol. 14, OT009.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Peduto Hand, F. (2020). Evaluation of directed fungicide spray applications for control of Rhizoctonia crown rot on impatiens, 2019. PLANT DISEASE MANAGEMENT REPORTS. Vol. 14, OT011.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Wang, Y. W., Hess, J., Slot, J. C., & Pringle, A. (2020). De novo gene birth, horizontal gene transfer and gene duplication as sources of new gene families associated with the origin of symbiosis in Amanita. Genome Biology and Evolution, evaa193, https://doi.org/10.1093/gbe/evaa193
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Gluck-Thaler, E., Cerutti, A., Quintero, A. P., Butchacas, J., Roman-Reyna, V., Madhaven, V. N., ... & Lang, J. M. (2020). Repeated gain and loss of a single gene modulates the evolution of vascular pathogen lifestyles. Science Advances, EABC4516. https://advances.sciencemag.org/content/6/46/eabc4516
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Klass, TL, Long, JJ, Summers, JA, Roman-Reyna, V, Koebnik, R, Jacobs, JM, Peduto Hand, F. (2019). First report of bacterial blight of peony caused by Xanthomonas hortorum in Ohio. PLANT DISEASE 103(11): 2940.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Emanuel, I, Farinas, C, Lin, S, Pyerzynski, J, Crouch, JA, Peduto Hand, F. (2019). "Occurrence of boxwood blight caused by Calonectria pseudonaviculata in Ohio landscapes". PLANT DISEASE 103(10): 2670.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Olarte, R. A., Menke, J., Zhang, Y., Sullivan, S., Slot, J. C., Huang, Y., ... & Bushley, K. E. (2019). Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum. BMC genomics, 20(1), 1-23.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Ewing, C. J., Hausman, C. E., Pogacnik, J., Slot, J., & Bonello, P. (2019). Beech leaf disease: An emerging forest epidemic. Forest Pathology, 49(2), e12488.
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Emanuel, IB., Peduto Hand, F. (2020). Effects of temperature on spore germination and hyphal growth of fungi associated with latent fruit rot in deciduous holly (Ilex spp.). Global One Health Day 2020 Conference, Columbus, OH (Nov 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Olmos, C, Cohen, SP, Koebnik, R, Peduto Hand, F, Jacobs, JM. (2020). Insights into the?pathogenicity of?Xanthomonas?hyacinthi, the causal agent of yellow disease?on?Hyacinthus?spp. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Roman-Reyna, V, Dupas, E, Cesbron, S, Marchi, G, Hansen MA, Bush, E, Rotondo, F, Lewis Ivey, ML, Miller, SA, Peduto Hand, F, Jacques, M, Jacobs, JM. (2020). Metagenomic sequencing as a diagnostic tool for Xylella fastidiosa diseases such as olive quick decline syndrome and Pierces disease of grapes. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Farinas, C, Wooten, A, Peduto Hand, F, Bonello, E. (2020). Assessment of American Sycamores resistance to canker pathogens. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Farinas, C, Jourdan, P, Slot, JC, Peduto Hand, F. (2020). Shedding light on the evolutionary strategies of obligate biotrophic pathogens: the example of Phlox powdery mildew. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Emanuel, IB., Peduto Hand, F. (2020). Determining the stage in the fruit maturation process when detached fruits of Ilex serrata � I. verticillata become susceptible to colonization by Diaporthe ilicicola. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Klein, J. M., Wu, T., Delgado, J., Peduto Hand, F., Baysal-Gurel, F., Hirsch, R. L., Friesen, T. L., Donofrio, N. M. (2020). The current status of plant-related outreach across the United States and what APS is doing to help. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Slot, J. C., & Gluck-Thaler, E. (2019). Metabolic gene clusters, fungal diversity, and the generation of accessory functions. Current Opinion in Genetics & Development, 58, 17-24.
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Castroagudin, VL, Weiland, J, Baysal-Gurel, F, Cubeta, M, Daughtrey, M, Gauthier, N, LaMondia, J, Luster, D, Peduto Hand, F, Shishkoff, N, Woodward-Williams, J, Zhang, X, LeBlanc, N, Crouch, JA. (2020). Genetic structure of contemporary populations of the boxwood blight pathogen in the U.S. American Phytopathological Society Annual Meeting (Aug 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2020
Citation:
Peduto Hand, F. Necessity or luxury? Defining the value of ornamental plants and of collaborative research in ornamental plant pathology. Ohio State University Plant Sciences Symposium, Columbus, OH (July 2020)
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2019
Citation:
Lopez-Nicora, H. D., Gluck-Thaler, E., Ralston, T. I., Ganeshan, V. D., Ocampos, C. G., Dorrance, A. E., ... & Niblack, T. L. (2019). Deciphering the pangenome of Macrophomina phaseolina populations from Ohio and Paraguay. Plant Health 2019.
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2019
Citation:
Cerutti, A., Jauneau, A., Auriac, M. C., Butchacas, J., Gluck-Thaler, E., Slot, J., ... & Jacobs, J. M. (2019, July). A single cellobiosidase is required for barley hydathode and xylem colonization by Xanthomonas translucens. In 2019 IS-MPMI XVIII Congress. ISMPMI.
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2019
Citation:
Gluck-Thaler, E., Cerutti, A., Quintero, A. L. P., Pesce, C., Jauneau, A., Vancheva, T., ... & Szurek, B. (2019). Ebb and flow of vascular pathogenesis through repeated gain and loss of a molecular switch. Molecular Plant-Microbe Interactions, 32(Suppl. 10).
- Type:
Theses/Dissertations
Status:
Published
Year Published:
2020
Citation:
Farins, C. (2020). Understanding the powdery mildew disease of the ornamental plant Phlox: combining applied and basic research. The Ohio State University
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