Source: MISSISSIPPI STATE UNIV submitted to NRP
INSTITUTE FOR GENOMICS, BIOCOMPUTING & BIOTECHNOLOGY
Sponsoring Institution
State Agricultural Experiment Station
Project Status
COMPLETE
Funding Source
STATE
Reporting Frequency
Annual
Accession No.
1019006
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Mar 6, 2019
Project End Date
Feb 29, 2024
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
MISSISSIPPI STATE UNIV
(N/A)
MISSISSIPPI STATE,MS 39762
Performing Department
LSBI / IGBB
Non Technical Summary
The Institute for Genomics, Biocomputing & Biotechnology (IGBB) at Mississippi State University (MS State) was founded in2011 to increase the ability of Mississippi scientists to lead and participate in high-throughput, multi-disciplinary projects focusedon understanding the biomolecular interactions underlying the diversity, value, health, and sustainability of species ofagricultural, medical, bioenergy, and/or ecological importance. The IGBB serves the university by providing MS Stateresearchers and their collaborators access to a team of highly-skilled professionals trained in cutting-edge genomics,proteomics, and high performance biocomputing principles and techniques. Through in-house instrumentation andcommercial/academic partnerships, the IGBB team generates DNA sequence, transcriptomic, metabolomic, and proteomicdata. The IGBB team works with researchers to analyze data using state-of-the-art software including programs/pipelinesdeveloped by IGBB computational scientists. Moreover, as one of themember institutes of MS State's High PerformanceComputing Collaboratory (HPC2), the IGBB utilizes HPC2 supercomputing power to efficiently derive biological knowledge fromlarge, diverse datasets. In addition to the aforementioned activities, the IGBB administration works to optimize the scientific andeconomic impact of the university through the development of multidisciplinary research/grant-writing teams and by makingstrategic investments in infrastructure and personnel. The primary goal of the IGBB is to foster research synergies thatultimately improve the scientific standing and economic status of Mississippi State University and the state of Mississippi.
Animal Health Component
45%
Research Effort Categories
Basic
45%
Applied
45%
Developmental
10%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2010612104010%
2011710108010%
2011719108020%
3043899104010%
7121710108010%
3043719108010%
2111710108010%
1024099108010%
2124030108010%
Knowledge Area
212 - Pathogens and Nematodes Affecting Plants; 102 - Soil, Plant, Water, Nutrient Relationships; 211 - Insects, Mites, and Other Arthropods Affecting Plants; 712 - Protect Food from Contamination by Pathogenic Microorganisms, Parasites, and Naturally Occurring Toxins; 201 - Plant Genome, Genetics, and Genetic Mechanisms; 304 - Animal Genome;

Subject Of Investigation
4099 - Microorganisms, general/other; 0612 - Conifer forests of the West; 3719 - Other cultured finfish; 3899 - Other animals, general; 1719 - Cotton, other; 4030 - Viruses; 1710 - Upland cotton;

Field Of Science
1040 - Molecular biology; 1080 - Genetics;
Goals / Objectives
The mission of the IGBB is to foster research synergies that ultimately improve the scientific standing and economic status ofMississippi State University. Specific goals of the IGBB include:(1) Conducting scientific research that meets the needs of society and further enhances the unique strengths of MS State;(2) Attracting and retaining outstanding faculty and students at MS State;(3) Offering researchers at MS State and elsewhere the opportunity to collaborate with the IGBB's genomics, proteomics, andcomputational biology experts;(4) Helping principal investigators leverage the experience and expertise of the IGBB to make their research programs moreproductive, increase the number and scientific impact of their publications, and enhance their ability to procure extramuralfunding;(5) Supporting educational activities that enhance the abilities of students and faculty to succeed in the multi-disciplinary fields ofcomputational biology, genomics, and biotechnology.
Project Methods
IGBB research projects are conducted using a variety of methods, techniques, and instrumentation. The tools most commonlyused in our research include the following:(1) Illumina DNA sequencing - The IGBB owns an Illumina MiSeq sequencer and has access through contracts with BGI and Novogene to Illumina HiSeq and NovaSeqinstruments. Sequencing is performed as part of externally-funded research projects and as a service to Mississippi State faculty/staff on a fee-per-service (cost-recovery-only) basis. Illumina DNA and RNA-Seq data is stored, manipulated, and analyzed using the supercomputers in MS State's High Performance Computing Collaboratory (HPC2) of which the IGBB is a member center. Public, commercial, and inhouse scripts are used in sequence analysis.(2) Oxford Nanopore DNA sequencing - The IGBB owns and operates a long-read, high-throughput Oxford Nanopore GridIONx5 sequencer. The long nucleotide reads produced by the nanopore sequencer are used in the assembly of eukaryotic and prokaryotic genomes.(3) Pacific Biosciences DNA sequencing - The IGBB has access to PacBio sequencing through its contract with Novogene. The results produced by PacBio instruments are comparable to those generated by Oxford Nanopore instruments.(4)Mass Spectrometry - The IGBB has both gel-based and liquid based mass spectrometry systems which it uses to identifyproteins, discover and characterize protein post-translational modifications, conduct quantitative proteomics, perform qualitativeand quantitative comparison of the protein complements of different tissues/stages/organisms, integrate proteomic and nucleicacids data (e.g., proteogenomic mapping), and perform functional annotation of proteins using Gene Ontology (GO) standardsand procedures. For liquid-based proteomics, the IGBB's proteomics staff uses a Waters Nano ESI Q-TOF (model Xevo G2-S)mass spectrometer and LTQ Orbitrap Velos and standard LTQ mass spectrometers fitted with upstream HPLC samplepurification systems. Gel-based proteomics is conducted using the IGBB's MALDI TOF TOF mass spectrometer. Recently, wehave also begun to perform metabolomic research using the LTQ Orbitrap Velos.(5) Computational Biology - The IGBB is one of several member centers of MS State's High Performance Computing Collaboratory(HPC2: http://www.hpc.msstate.edu/). The HPC2 is governed by an Operations Board (Ops Board) composed of the directorsof the five member institutes (voting members) and the Associate Vice President for Research (non-voting member). Dr.Peterson is the IGBB's representative on the Ops Board. All IGBB faculty/staffhave access to the various supercomputers located in the HPC Building. The HPC2 and all of its computers are managed and maintained by the HPC2's Computing Office. The HPC2 has consistently ranked in the Top500 supercomputing lists since June 1996.The HPC2 currently operates several supercomputers includinga CS300-LC cluster supercomputer - specifically, a liquid-cooled system manufactured by Cray Inc. This machine, which has been named "Shadow," serves as the primary high-performance computing asset for shared research. Shadow is 10 times faster than the university's previous fastest system (i.e., Talon), but consumes far less energy. Shadow is capable of 593 TeraFLOPS and is characterized by 4,800 processor cores (Intel Xeon E5-2680 V2, 2.8 GHz), 28,800 coprocessor cores (Intel Xeon Phi 5110P), 15 terabytes of memory, and FDR InfiniBand (56 Gb/s). The second fastest computing cluster at the HPC2 is Talon. Talon (IBM iDataPlex cluster with 3,072 processor cores, six-core Intel Xeon processors, more than six terabytes of RAM, and a Voltaire, Inc., high-speed quad data rate InfiniBand network). Talon has a proven peak performance of more than 34.4 TeraFLOPS. Other resources include a 10-teraflop 2048 processor AMD Opteron cluster, a 384 processor Intel Xeon cluster with InfiniBand interconnect, a 512 processor SGI ORIGIN 3900, a 128 processor SGI ORIGIN 3800, a 64 processor SGI ORIGIN 3800, and numerous additional special purpose machines. Data storage capabilities include a 250 terabyte high performance disk system and a 2 petabyte near-line storage system.Genome assembly, which is notoriously RAM intensive, is performed using the shared memory machines Atlas and Skybolt. Each machine has 512 GB RAM, 16 compute cores, and 2.3 TB of local storage.High-end visualization needs are met by an immersive reconfigurable CAVE virtual reality environment driven by a 4 node visualization cluster. An access grid node allows for state-of-the-art video teleconferencing and remote collaboration.The network infrastructure backbone consists of both 10-Gigabit Ethernet and Gigabit Ethernet, with an extensive Gigabit Ethernet network for desktop connectivity. Internet connectivity is provided via Mississippi State University's 10-Gigabit Ethernet campus backbone. Campus connectivity to the Internet at large is via a 1 Gigabit connection. Mississippi State University is a charter member of the Internet2 Consortium, and currently utilizes a 1 Gigabit connection to the Louisiana Optical Network Initiative (LONI) regional network for connectivity to Internet2/NewNet and the National LambdaRail (NLR) via a 10 Gigabit connection.In addition to the HPC2 computers, the IGBB's Laboratories possesses multiple Windows, Linux, and dual boot workstations.A number of different molecular analysis programs are currently loaded on the HPC2 supercomputers.

Progress 03/06/19 to 02/29/24

Outputs
Target Audience: Nothing Reported Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The goals were accomplished.

Publications


    Progress 10/01/23 to 02/29/24

    Outputs
    Target Audience: Nothing Reported Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

    Impacts
    What was accomplished under these goals? The goals were accomplished.

    Publications


      Progress 10/01/22 to 09/30/23

      Outputs
      Target Audience: Nothing Reported Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

      Impacts
      What was accomplished under these goals? The goals are being accomplished.

      Publications


        Progress 10/01/21 to 09/30/22

        Outputs
        Target Audience:The target audience for our research is diverse and includes plant and animal breeders, evolutionary biologists, plant and animal pathologists, pest/pathogen management personnel, farmers, ranchers, medical researchers, practicing doctors, computational biologists, bioinformaticians, ecologists, toxicologists, food scientists, poultry scientists, entomologists, nematologists, wildlife biologists, veterinary scientists, and practicing veterinarians. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?• The IGBB continued its active role in the University & Industry Consortium (UIC). The UIC is a group working to increase partnerships between agricultural, food, and biotechnology companies and land-grant institutions. The UIC began more than 20 years ago with Mississippi State serving as a founding member. The UIC provides opportunities for students and faculty to interact and develop research and educational collaborations with leaders in industry and academia. • The IGBB supported participation of research faculty, research associates, computer specialists, and students in several national and international scientific meetings. • The IGBB trained three graduate students and four undergraduate student workers in computational biology and molecular biology techniques. How have the results been disseminated to communities of interest?Results have been disseminated to the scientific community through peer-reviewed publications, book chapters, scientific meetings/presentations, faculty exchange programs, and the IGBB website (www.igbb.msstate.edu). In addition, DNA sequence and gene expression data were disseminated through AgBase (www.agbase.msstate.edu), CrocGenomes (www.crocgenomes.org), CottonGen (www.cottongen.org), and the National Center for Biotechnology Information (NCBI; www.ncbi.nlm.nih.gov). What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period we plan to focus on expanding the IGBB's computational biology expertise, strengthening our partnerships with federal and state agencies, and increasing the number of IGBB faculty affiliates.

        Impacts
        What was accomplished under these goals? Below is a list of our major project goals (1-5). Each goal is followed by accomplishments (each delineated by a bullet) made over the course of the last year. (1) Conducting scientific research that meets the needs of society and further enhances the unique strengths of MS State. • The IGBB employed 21.5 people (FTE) during the period in question. In doing so, the IGBB helped strengthen MS State and the local/state economies. • The IGBB's total expenditures were $2.1 million. • IGBB scientists published twelve method/tool development papers in FY22. Specifically, these papers describe (a) an automated technique for detection of drought and/or nematode infestation in plant roots, (b) a new coating combination for 3D-printed nanoscaffolds, (c) a program for the automated calculation of animal density from remote camera images, (d) a biobased honeycomb architecture for CO2 capture and water remediation, (e) an improved method for mapping transcriptomes, (f) a near-infrared spectroscopy technique for sex discrimination in endangered toads, (g) a new program for analyzing 2D polyacrylamide protein gels, (h) a model for studying spatial data associated with diseases, (i) a novel method for analyzing the redox reactivity of plant proteins, (j) a protocol for protecting dry-cured hams from microbe growth, (k) an instructional tool for natural resources extension and outreach, and (l) a new procedure for detection and classification of rice diseases. • The IGBB is continuing a two-part project with funding from the Mississippi Department of Marine Resources. The first part of the project involved a study of the genetic diversity and population structure of the Gulf of Mexico bottlenose dolphin (Tursiops truncatus). A manuscript on the dolphin research is near completion. The second part of the project, which is currently underway, is a study of genetic diversity in Gulf of Mexico Kemp's ridley sea turtles (Lepidochelys kempii). • We are continuing work with the U.S. Army Corps of Engineers (USACE) Engineering Research and Development Center (ERDC) in Vicksburg, MS. The IGBB conducts sequencing and computational biology research in collaboration with the ERDC's ecology team. The goal of the project is to explore the effects of per- and polyfluoroalkyl substances on aquatic species. (2) Attracting and retaining outstanding faculty and students at MS State. • The IGBB employs Drs. Tibor Pechan, Nina Aboughanem, George Popescu, and Shankar Shanmugam as research faculty. • The IGBB employs Dr. Chuan-Yu Hsu, Dr. Olga Pechanova, Dr. Ramey "Cal" Youngblood, and Dr. Zenaida Magbanua, as full-time senior research associates. • The IGBB employs Dr. Adam Thrash and Mr. Tony Arick as full-time computer specialists. • The IGBB invested in the research programs of several MS State departmental faculty including Dr. Sandra Correa (Wildlife, Fisheries & Aquaculture), Dr. Austin Himes (Forestry), Dr. Li Zhang (Poultry Science), Dr. Xue Zhang and Dr. Wes Schilling (Food Science, Nutrition & Health Promotion), Dr. Te-Ming Tseng (Plant and Soil Sciences), Dr. Jeffrey Dean and Dr. Sorina Popescu (Biochemistry, Molecular Biology, Entomology and Plant Pathology), and Dr. Leyla Rios de Alvarez (Animal & Dairy Sciences). Additional departmental partnerships are in the works. • The IGBB has provided opportunities for three graduate students to earn their Ph.D. degrees. These students are/were funded through extramural awards to the IGBB. • The IGBB has continued to invest in purchase and maintenance of state-of-the-art equipment as a means of creating research opportunities and attracting/retaining faculty. In FY21 the IGBB purchased service contracts for their LTQ Orbitrap Velos mass spectrometer, their Illumina MiSeq DNA sequencer, and their Oxford Nanopore Technologies GridIONx5 DNA sequencer. (3) Offering researchers at MS State and elsewhere the opportunity to collaborate with the IGBB's genomics, proteomics, and computational biology experts. • Records showed that the IGBB conducted 24 separately invoiced service projects with a total net value of $204,792. • Service Center records show that service jobs were submitted by 12 different PIs representing multiple MS State departments. • Additionally, Service Center work was done for one researcher at Palacky University (Olomouc, Czech Republic), the toxicology group of the U.S. Army Corps of Engineers, and the USDA Forest Service. • Service Center and computer usage records indicate that the institute conducted collaborative research with roughly 35 different PIs. (4) Helping principal investigators leverage the experience and expertise of the IGBB to make their research programs more productive, increase the number and scientific impact of their publications, and enhance their ability to procure extramural funding. • Several new local/state/federal grants (net value = $1.25 M) were obtained by IGBB faculty. • 199 peer-reviewed manuscripts were published by IGBB-affiliated scientists during the fiscal year. (5) Supporting educational activities that enhance the abilities of students and faculty to succeed in the multidisciplinary fields of computational biology, genomics, and biotechnology. • See Opportunities for Training and Professional Development below.

        Publications

        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Poudel S, Li T, Chen S, Zhang X, Cheng W-H, Sukumaran AT, Kiess AS, Zhang L (2022) Prevalence, Antimicrobial Resistance, and Molecular Characterization of Campylobacter Isolated from Broilers and Broiler Meat Raised without Antibiotics. Microbiology Spectrum 10(3): 0. doi:10.1128/spectrum.00251-22
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Adisasmito WB, Almuhairi S, Behravesh CB, Bilivogui P, Bukachi SA, Casas N, Becerra NC, Charron DF, Chaudhary A, Ciacci Zanella JR, Cunningham AA, Dar O, Debnath N, Dungu B, Farag E, Gao GF, Hayman DTS, Khaitsa M, Koopmans MPG, Machalaba C, Mackenzie JS, Markotter W, Mettenleiter TC, Morand S, Smolenskiy V, Zhou L (2022) One Health: A new definition for a sustainable and healthy future. PLoS Pathogens 18(6): e1010537. doi:10.1371/journal.ppat.1010537
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: King DT, Wang G, Cunningham FL (2022) Large-and Small-Scale Climate Influences Spring Migration Departure Probability of American White Pelicans. Diversity 14(6): 500. doi:10.3390/d14060500
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Hale CW, Granger JJ, Correa SB, Dubien JL, Siegert CM (2022) Atlantic White-Cedar (Chamaecyparis thyoides [L.] B.S.P.) Response Post-Hurricane Disturbance. Forest Science 68(3): 270-282. doi:10.1093/forsci/fxac007
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Arregui L, Kouba AJ, Germano JM, Barrios L, Moore M, Kouba CK (2021) Fertilization potential of cold-stored Fowler's toad (Anaxyrus fowleri) spermatozoa: Temporal changes in sperm motility based on temperature and osmolality. Reproduction, Fertility and Development 34(5): 461-469. doi:10.1071/RD21037
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Burger I, Julien AR, Kouba AJ, Barber D, Counsell KR, Pacheco C, Krebs J, Kouba CK (2021) Linking in-situ and ex-situ populations of threatened amphibians through genome banking. Conservation Science and Practice 3(11): e525. doi:10.1111/csp2.525
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Barickman TC, Brazel S, Sehgal A, Walne CH, Gao W, Reddy KR (2021) Individual and interactive temporal implications of uv-b radiation and elevated co2 on the morphology of basil (Ocimum basilicum l.). Horticulturae 7(11): 474. doi:10.3390/horticulturae7110474
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: De Jong GD, Meyer F, Goddard J (2021) An Annotated List of the Blow Flies and Cluster Flies (Diptera: Calliphoridae, Polleniidae) of Mississippi. Transactions of the American Entomological Society 147(3): 827-843. doi:10.3157/061.147.0304
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Li G, Wan X, Yin B, Wei W, Hou X, Zhang X, Batsuren E, Zhao J, Huang S, Xu X, Liu J, Song Y, Ozgul A, Dickman CR, Wang G, Krebs CJ, Zhang Z (2021) Timing outweighs magnitude of rainfall in shaping population dynamics of a small mammal species in steppe grassland. Proceedings of the National Academy of Sciences of the United States of America 118(42): e2023691118. doi:10.1073/pnas.2023691118
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Nakamya MF, Ayoola MB, Shack LA, Swiatlo E, Nanduri B (2021) The effect of impaired polyamine transport on pneumococcal transcriptome. Pathogens 10(10): 1322. doi:10.3390/pathogens10101322
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Clay NA, Siegert C, Tang JD, Little NS, Eckhardt LG, Riggins JJ (2021) Termite Presence and Feeding on Loblolly Pine Wood Differs Among Four Root-Infecting Bluestain (ophiostomatoid) Fungal Species. Environmental Entomology 50(5): 1118-1126. doi:10.1093/ee/nvab052
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Walne CH, Reddy KR (2021) Developing functional relationships between soil waterlogging and corn shoot and root growth and development. Plants 10(10): 2095. doi:10.3390/plants10102095
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fatemi SA, Elliott KEC, Bello A, Peebles ED (2021) Effects of the in ovo injection of vitamin D3 and 25-hydroxyvitamin D3 in Ross 708 broilers subsequently challenged with coccidiosis. I. performance, meat yield and intestinal lesion incidence1,2,3. Poultry Science 100(10): 101382. doi:10.1016/j.psj.2021.101382
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Mohammadi-Aragh MK, Stokes CE (2021) Assessing Class 1 Integron Presence in Poultry Litter Amended with Wood Biochar and Wood Vinegar. Current Microbiology 78(10): 3733-3740. doi:10.1007/s00284-021-02640-4
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tomasechova J, Predajna L, Mihalik D, Mrkvova M, Cejnar P, Soltys K, Sabanadzovic S, Glasa M (2021) Characterization of an isolate of lettuce big-vein associated virus (Lbvav) detected in naturally infected tomato (Solanum lycopersicum l.) in Slovakia. Plant Protection Science 57(4): 344-348. doi:10.17221/56/2021-PPS
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Yazdekhasti A, Wang J, Zhang L, Ma J (2021) A multi-period multi-modal stochastic supply chain model under COVID pandemic: A poultry industry case study in Mississippi. Transportation Research Part E: Logistics and Transportation Review 154: 102463. doi:10.1016/j.tre.2021.102463
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fowler NL, Spady TJ, Wang G, Leopold BD, Belant JL (2021) Denning, metabolic suppression, and the realisation of ecological opportunities in Ursidae. Mammal Review 51(4): 465-481. doi:10.1111/mam.12246
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Hoffmann FG, Storz JF, Kuraku S, Vandewege MW, Opazo JC (2021) Whole-Genome Duplications and the Diversification of the Globin-X Genes of Vertebrates. Genome Biology and Evolution 13(10): evab205. doi:10.1093/gbe/evab205
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kim YB, Yoon S, Seo KW, Shim JB, Noh EB, Lee YJ (2021) Detection of Linezolid-Resistant Enterococcus faecium Isolates from the Layer Operation System in Korea. Microbial Drug Resistance 27(10): 1443-1449. doi:10.1089/mdr.2020.0028
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Colosimo G, Jackson AC, Benton A, Varela-Stokes A, Iverson J, Knapp CR, Welch M (2021) Correlated Population Genetic Structure in a Three-Tiered Host-Parasite System: The Potential for Coevolution and Adaptive Divergence. Journal of Heredity 112(7): 590-601. doi:10.1093/jhered/esab058
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Seo KS, Park N, Rutter JK, Park Y, Baker CL, Thornton JA, Park JY (2021) Role of glucose-6-phosphate in metabolic adaptation of staphylococcus aureus in diabetes. Microbiology Spectrum 9(2): e00857-21. doi:10.1128/Spectrum.00857-21
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Hendrix JD, Campbell YL, Zhang X, Downey LH, Jagger CB, Schilling MW (2021) Delivery and evaluation of a food science professional development training for Mississippi career technical education teachers. Journal of Food Science Education 20(4): 197-207. doi:10.1111/1541-4329.12228
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Tombacz D, Kakuk B, Torma G, Csabai Z, Gulyas G, Tamas V, Zadori Z, Jefferson VA, Meyer F, Boldogkoi Z (2022) In-Depth Temporal Transcriptome Profiling of an Alphaherpesvirus Using Nanopore Sequencing. Viruses 14(6): 1289. doi:10.3390/v14061289
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Samadi Kalkhoran E, Alebrahim MT, Mohammaddoust Chamn Abad HR, Streibig JC, Ghavidel A, Tseng T-MP (2022) The Survival Response of Earthworm (Eisenia fetida L.) to Individual and Binary Mixtures of Herbicides. Toxics 10(6): 320. doi:10.3390/toxics10060320
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Thames HT, Fancher CA, Colvin MG, McAnally M, Tucker E, Zhang L, Kiess AS, Dinh TTN, Sukumaran AT (2022) Spoilage Bacteria Counts on Broiler Meat at Different Stages of Commercial Poultry Processing Plants That Use Peracetic Acid. Animals 12(11): 1439. doi:10.3390/ani12111439
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Butler AB, Wang G (2022) Connecting hunt outcomes to the demographics, behaviors, and experiences of wild turkey hunters in Mississippi. Wildlife Society Bulletin 46(2): e1268. doi:10.1002/wsb.1268
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Gautreaux MA, Tucker LJ, Person XJ, Zetterholm HK, Priddy LB (2022) Review of immunological plasma markers for longitudinal analysis of inflammation and infection in rat models. Journal of Orthopaedic Research 40(6): 1251-1262. doi:10.1002/jor.25330
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Poudel I, Beck MM, Kiess AS, Adhikari P (2022) The effect of blue and red LED light on the growth, egg production, egg quality, behavior, and hormone concentration of Hy-Line W-36 laying hens. Journal of Applied Poultry Research 31(2): 100248. doi:10.1016/j.japr.2022.100248
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Chen DM, Moore MG, Willis EL, Kouba AJ, Kouba CK (2022) The impact of time and environmental factors on the mitochondrial vesicle and subsequent motility of amphibian sperm. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology 268: 111191. doi:10.1016/j.cbpa.2022.111191
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Zhang X, Elsayed I, Nayanathara RMO, Song X, Shmulsky R, Hassan EB (2022) Biobased hierarchically porous carbon featuring micron-sized honeycomb architecture for CO2 capture and water remediation. Journal of Environmental Chemical Engineering 10(3): 107460. doi:10.1016/j.jece.2022.107460
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Kennedy-2nd DE, Mody P, Gout J-F, Tan W, Seo KS, Olivier AK, Rosch JW, Thornton JA (2022) Contribution of Puma to Inflammatory Resolution During Early Pneumococcal Pneumonia. Frontiers in Cellular and Infection Microbiology 12: 886901. doi:10.3389/fcimb.2022.886901
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Tice AK, Brown MW (2022) Multicellularity: Amoebae follow the leader to food. Current Biology 32(9): R418-R420. doi:10.1016/j.cub.2022.03.067
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Liao Y-C, Kim T, Silva JL, Chen B-Y (2022) A New Approach for Quantifying Purpurogallin in Brewed Beverages Using LC-MS in Combination with Solid Phase Extraction. Foods 11(10): 1429. doi:10.3390/foods11101429
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ber JL, Goddard J, Nations TM, Outlaw DC (2022) Survey and Phylogenetic Analysis of Leucocytozoon (Apicomplexa: Haemosporida) Parasites in Mississippi Black Flies (Diptera: Simuliidae). Journal of Medical Entomology 59(3): 1042-1046. doi:10.1093/jme/tjac034
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Alqhtani AH, Fatemi SA, Elliott KEC, Branton SL, Evans JD, Leigh SA, Gerard PD, Peebles ED (2022) Effects of the In Ovo Vaccination of the ts-11 Strain of Mycoplasma gallisepticum in Layer Embryos and Posthatch Chicks. Animals 12(9): 1120. doi:10.3390/ani12091120
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Xue S, Park J-Y, Tuell JR, Maskal JM, Johnson JS, Dinh T, Brad Kim YH (2022) In Utero Heat Stress Has Minimal Impacts on Processed Pork Products: A Comparative Study. Foods 11(9): 1222. doi:10.3390/foods11091222
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Popescu SC, Tomaso-Peterson M, Wilkerson T, Bronzato-Badial A, Wesser U, Popescu GV (2022) Metagenomic Analyses of the Soybean Root Mycobiome and Microbiome Reveal Signatures of the Healthy and Diseased Plants Affected by Taproot Decline. Microorganisms 10(5): 856. doi:10.3390/microorganisms10050856
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Chang D, Dong H, Bai S, Wu Y (2022) Mapping QTLs for spring green-up, plant vigor, and plant biomass in two lowland switchgrass populations. Molecular Breeding 42(5): 27. doi:10.1007/s11032-022-01296-7
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Vandewege MW, Platt-2nd RN, Merriman DK, Ray DA, Hoffmann FG (2022) The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements. RNA (New York, N.Y.) 28(4): 609-621. doi:10.1261/rna.078862.121
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Gunn MA, Allen PJ, Rosser TG, Wise DJ, Griffin MJ (2022) Cercarial Longevity and Infectivity of Bolbophorus damnificus, with Notes on Metacercarial Persistence and Site Specificity in Channel and Hybrid Catfish. Journal of Parasitology 108(2): 217-225. doi:10.1645/20-123
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Jia J, Ford E, Hobbs SM, Baird SM, Lu S-E (2022) Occidiofungin Is the Key Metabolite for Antifungal Activity of the Endophytic Bacterium Burkholderia sp. MS455 Against Aspergillus flavus. Phytopathology 112(3): 481-491. doi:10.1094/PHYTO-06-21-0225-R
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Wall C, Tolar-Peterson T, Reeder N, Roberts M, Reynolds A, Mendez GR (2022) The Impact of School Meal Programs on Educational Outcomes in African Schoolchildren: A Systematic Review. International Journal of Environmental Research and Public Health 19(6): 3666. doi:10.3390/ijerph19063666
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Narayana NK, Kingery WL, Shankle MW, Shanmugam SG (2022) Differential Response of Soil Microbial Diversity and Community Composition Influenced by Cover Crops and Fertilizer Treatments in a Dryland Soybean Production System. Agronomy 12(3): 618. doi:10.3390/agronomy12030618
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Lee P, Popescu GV, Kim S (2022) Stable rotational symmetric schemes for nonlinear reaction-diffusion equations. Computers and Mathematics with Applications 109: 191-203. doi:10.1016/j.camwa.2022.01.026
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Khatooni M, Karimmojeni H, Zali AG, Razmjoo J, Tseng T-M (2022) Salicylic acid enhances tolerance of Valeriana officinalis L. to bentazon herbicide. Industrial Crops and Products 177: 114495. doi:10.1016/j.indcrop.2021.114495
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Sheng X, Hsu C-Y, Ma C, Brunner AM (2022) Functional Diversification of Populus FLOWERING LOCUS D-LIKE3 Transcription Factor and Two Paralogs in Shoot Ontogeny, Flowering, and Vegetative Phenology. Frontiers in Plant Science 13: 805101. doi:10.3389/fpls.2022.805101
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Opazo JC, Hoffmann FG, Zavala K, Edwards SV (2022) Evolution of the DAN gene family in vertebrates. Developmental Biology 482: 34-43. doi:10.1016/j.ydbio.2021.12.002
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Brown SP, Shahrtash M, Tucker AE, Knoepp J, Stokes CE, Baird R (2022) Seasonal disconnects between saprobic and mycorrhizal sporocarp communities in the Southern Appalachian Mountains. Fungal Ecology 55: 101125. doi:10.1016/j.funeco.2021.101125
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ravindran P, Owens FC, Wade AC, Shmulsky R, Wiedenhoeft AC (2022) Towards Sustainable North American Wood Product Value Chains, Part I: Computer Vision Identification of Diffuse Porous Hardwoods. Frontiers in Plant Science 12: 758455. doi:10.3389/fpls.2021.758455
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Brown AT, Lee JT, Adhikari R, Haydon K, Wamsley KGS (2021) Determining the optimal digestible isoleucine to lysine ratio of Ross 708 × Ross YP male broilers from 28 to 42 days of age. Journal of Applied Poultry Research 30(4): 100205. doi:10.1016/j.japr.2021.100205
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Moreno Santillan DD, Lama TM, Gutierrez Guerrero YT, Brown AM, Donat P, Zhao H, Rossiter SJ, Yohe LR, Potter JH, Teeling EC, Vernes SC, Davies KTJ, Myers E, Hughes GM, Huang Z, Hoffmann F, Corthals AP, Ray DA, Davalos LM (2021) Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular Ecology 30(23): 6449-6467. doi:10.1111/mec.16027
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Scott MA, Woolums AR, Swiderski CE, Perkins AD, Nanduri B, Smith DR, Karisch BB, Epperson WB, Blanton-Jr JR (2021) Multipopulational transcriptome analysis of post-weaned beef cattle at arrival further validates candidate biomarkers for predicting clinical bovine respiratory disease. Scientific Reports 11(1): 23877. doi:10.1038/s41598-021-03355-z
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Scott MA, Woolums AR, Swiderski CE, Perkins AD, Nanduri B (2021) Genes and regulatory mechanisms associated with experimentally-induced bovine respiratory disease identified using supervised machine learning methodology. Scientific Reports 11(1): 22916. doi:10.1038/s41598-021-02343-7
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Lampert S, Chen D, Burger I, Barber D, Poole V, Smith D, Kouba A, Kouba C (2021) Saving salamanders with sonograms: tracking follicular development with ultrasonography in a variety of caudate species. Reproduction, Fertility and Development 34(2): 244-245. doi:10.1071/RDv34n2Ab21
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Chen DM, Chen L-D, Kouba CK, Kouba AJ (2021) Paths less travelled: novel oral and nasal hormone administration routes for eliciting spermiation in male eastern tiger salamanders (Ambystoma tigrinum). Reproduction, Fertility and Development 34(2): 244. doi:10.1071/RDv34n2Ab20
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Atwill RL, Krutz LJ, Spencer GD, Bond JA, Reddy KR, Gore J, Walker TW, Boykin D (2021) Implications of experimental design on predicting economic optimum nitrogen rates in rice. Agronomy 11(11): 2296. doi:10.3390/agronomy11112296
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Chakravarty D, Sahukhal G, Arick-2nd M, Davis ML, Donaldson JR (2021) Transcriptomic Analysis of Listeria monocytogenes in Response to Bile Under Aerobic and Anaerobic Conditions. Frontiers in Microbiology 12: 754748. doi:10.3389/fmicb.2021.754748
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Cao L, Pechan T, Lee S, Cheng W-H (2021) Identification of Selenoprotein H Isoforms and Impact of Selenoprotein H Overexpression on Protein but Not mRNA Levels of 2 Other Selenoproteins in 293T Cells. Journal of Nutrition 151(11): 3329-3338. doi:10.1093/jn/nxab290
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: De Jong GD, Meyer F, Goddard J (2021) Review of Spider Ecology during Carrion Decomposition, with a Field Study on Density and Taxa Richness in Pitfall Trap Captures of Geophilic Spiders (Aranea: Anyphaenidae, Corinnidae, Linyphiidae, Lycosidae, Salticidae). Annals of the Entomological Society of America 114(6): 756-764. doi:10.1093/aesa/saab028
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kalkhoran ES, Alebrahim MT, Abad HRMC, Streibig JC, Ghavidel A, Tseng T-MP (2021) The joint action of some broadleaf herbicides on potato (Solanum tuberosum l.) weeds and photosynthetic performance of potato. Agriculture (Switzerland) 11(11): 1103. doi:10.3390/agriculture11111103
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Shrestha S, Sharma G, Stallworth S, Redona ED, Tseng TM (2022) Exploring the Genetic Diversity among Weedy Rice Accessions Differing in Herbicide Tolerance and Allelopathic Potential. Diversity 14(1): 44. doi:10.3390/d14010044
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Jia L, Zhang X, Li X, Schilling W, David Peebles E, Kiess AS, Zhai W, Zhang L (2022) Bacitracin, Bacillus subtilis, and Eimeria spp. challenge exacerbates woody breast incidence and severity in broilers. Poultry Science 101(1): 101512. doi:10.1016/j.psj.2021.101512
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Burger I, Chen LD, Barber D, Poole V, Smith D, Kouba A, Kouba C (2021) All aboard the polar express: transferability of a cryopreservation protocol between anuran species. Reproduction, Fertility and Development 34(2): 243. doi:10.1071/RDv34n2Ab18
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ugur MR, Guerreiro DD, Moura AA, Memili E (2022) Identification of biomarkers for bull fertility using functional genomics. Animal Reproduction 19(1): e20220004. doi:10.1590/1984-3143-AR2022-0004
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Firth AG, Brooks JP, Locke MA, Morin DJ, Brown A, Baker BH (2022) Dynamics of Soil Organic Carbon and CO2 Flux under Cover Crop and No-Till Management in Soybean Cropping Systems of the Mid-South (USA). Environments - MDPI 9(9): 109. doi:10.3390/environments9090109
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ranathunge C, Chimahusky ME, Welch ME (2022) A comparative study of population genetic structure reveals patterns consistent with selection at functional microsatellites in common sunflower. Molecular Genetics and Genomics 297(5): 1329-1342. doi:10.1007/s00438-022-01920-3
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Perez LM, Mauleon R, Arick-2nd MA, Magbanua ZV, Peterson DG, Dean JFD, Tseng TM (2022) Transcriptome analysis of the 2,4-dichlorophenoxyacetic acid (2,4-D)-tolerant cotton chromosome substitution line CS-B15sh and its susceptible parental lines G. hirsutum L. cv. Texas Marker-1 and G. barbadense L. cv. Pima 379. Frontiers in Plant Science 13: 910369. doi:10.3389/fpls.2022.910369
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        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Forsythe ES, Grover CE, Miller ER, Conover JL, Arick-2nd MA, Carolina F Chavarro M, Leal-Bertioli SCM, Peterson DG, Sharbrough J, Wendel JF, Sloan DB (2022) Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels. Proceedings of the National Academy of Sciences of the United States of America 119(30): e2204187119. doi:10.1073/pnas.2204187119
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Olorunwa OJ, Adhikari B, Brazel S, Popescu SC, Popescu GV, Barickman TC (2022) Short waterlogging events differently affect morphology and photosynthesis of two cucumber (Cucumis sativus L.) cultivars. Frontiers in Plant Science 13: 896244. doi:10.3389/fpls.2022.896244
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Singh V, Segbefia W, Fuller MG, Shankle MW, Morris CJ, Meyers SL, Tseng T-M (2022) Allelopathy: an eco-friendly approach to control palmer amaranth using allelopathic sweetpotato. Frontiers in Agronomy 4: 930378. doi:10.3389/fagro.2022.930378
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Hale CW, Granger JJ, Siegert CM, Correa SB, Dubien JL, Goldsmith CD, Kruckeberg W (2022) Microsite Habitat, Species Associations, and Habitat Suitability Model of a Globally Imperiled Shrub. Natural Areas Journal 42(3): 206-217. doi:10.3375/21-41
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Chen W, Nichols L, Teer L, Clinton K, Priddy LB (2022) A hybrid coating of polydopamine and nano-hydroxyapatite enhances surface properties of 3D printed poly(lactic-co-glycolic acid) scaffolds. Journal of Materials Science 57(27): 13011-13026. doi:10.1007/s10853-022-07442-y
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Evans HC, Briggs EF, Burnett RH, Contreras-Correa ZE, Duvic MA, Dysart LM, Gilmore AA, Messman RD, Reid D, Rasit Ugur M, Kaya A, Memili E (2022) Harnessing the value of reproductive hormones in cattle production with considerations to animal welfare and human health. Journal of animal science 100(7): skac177. doi:10.1093/jas/skac177
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Li X, Tian H, Piao Z, Wang G, Xiao Z, Sun Y, Gao E, Holyoak M (2022) cameratrapR: An R package for estimating animal density using camera trapping data. Ecological Informatics 69: 101597. doi:10.1016/j.ecoinf.2022.101597
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Lei T, Sellers T, Luo C, Zhang L (2022) A Bio-Inspired Neural Network Approach to�Robot Navigation and�Mapping with�Nature-Inspired Algorithms. Lecture Notes in Computer Science 13345 LNCS: 3-16. doi:10.1007/978-3-031-09726-3_1
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ott BD, Torrans L, Griffin M, Allen PJ (2022) Quantitative PCR assays to measure the HPI axis neuropeptides corticotropin-releasing factor (CRF) and urotensin I (UI) in channel catfish (Ictalurus punctatus). Aquaculture 555: 738253. doi:10.1016/j.aquaculture.2022.738253
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Persaud L, Bheemanahalli R, Seepaul R, Reddy KR, Macoon B (2022) Low- and High-Temperature Phenotypic Diversity of Brassica carinata Genotypes for Early-Season Growth and Development. Frontiers in Plant Science 13: 900011. doi:10.3389/fpls.2022.900011
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Ishak GM, Feugang JM, Pechanova O, Pechan T, Peterson DG, Willard ST, Ryan PL, Gastal EL (2022) Follicular-fluid proteomics during equine follicle development. Molecular Reproduction and Development 89(7): 298-311. doi:10.1002/mrd.23622
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Dinken CP, Keretz KR, Schramm-Jr HL, Petrie-Hanson L, Schilling MW, Allen PJ (2022) The Effects of Water Temperature and Simulated Angling on the Physiological Stress Response of Largemouth Bass. Transactions of the American Fisheries Society 151(4): 487-506. doi:10.1002/tafs.10365
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Sah SK, Reddy KR, Li J (2022) Silicon Enhances Plant Vegetative Growth and Soil Water Retention of Soybean (Glycine max) Plants under Water-Limiting Conditions. Plants 11(13): 1687. doi:10.3390/plants11131687
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Zhang Y, Chang SKC (2022) Color and texture of surimi-like gels made of protein isolate extracted from catfish byproducts are improved by washing and adding soy whey. Journal of Food Science 87(7): 3057-3070. doi:10.1111/1750-3841.16229
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Liao C, Yu J, Wang J, Correa SB, Xiong F, Zhai D, Ye S, Liu J (2022) Trends and mechanisms behind the invasion of Coilia brachygnathus (Actinopterygii, Engraulidae) in one of the worlds largest reservoirs. Hydrobiologia 849(13): 2919-2932. doi:10.1007/s10750-022-04896-8
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Adhikari PA, Castro FLDS, Liu G, Kim WK (2022) Effects of Total Sulfur Amino Acids on Growth Performance, Immunity, and Meat Yield in Broilers Fed Diets With and Without Antibiotics. Frontiers in Veterinary Science 9: 903901. doi:10.3389/fvets.2022.903901
        • Type: Journal Articles Status: Published Year Published: 2022 Citation: Nateghi G, Tobeh A, Dehdar B, Alebrahim MT, Farzaneh S, Tseng TM (2022) Effect of Legume and Cereal Mulches on Weed Dynamics and Potato Yield. Legume Research 45(6): 735-741. doi:10.18805/LRF-656


        Progress 10/01/20 to 09/30/21

        Outputs
        Target Audience:The target audience for our research is diverse and includes plant and animal breeders, evolutionary biologists, plant and animal pathologists, pest/pathogen management personnel, farmers, ranchers, medical researchers, practicing doctors, computational biologists, bioinformaticians, ecologists, toxicologists, food scientists, poultry scientists, entomologists, nematologists, wildlife biologists, veterinary scientists, and practicing veterinarians. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?• The IGBB continued its active role in the University & Industry Consortium (UIC). The UIC is a group working to increase partnerships between agricultural, food, and biotechnology companies and land-grant institutions. The UIC began more than 20 years ago with Mississippi State serving as a founding member. The UIC provides opportunities for students and faculty to interact and develop research and educational collaborations with leaders in industry and academia. • The IGBB supported participation of research faculty, research associates, computer specialists, and students in several national and international scientific meetings. As in FY20, most meetings in FY21 were held virtually to prevent the spread of covid-19. • The IGBB trained three graduate students and four undergraduate student workers in computational biology and molecular biology techniques. How have the results been disseminated to communities of interest?Results have been disseminated to the scientific community through peer-reviewed publications, book chapters, scientific meetings/presentations, faculty exchange programs, and the IGBB website (www.igbb.msstate.edu). In addition, DNA sequence and gene expression data were disseminated through AgBase (www.agbase.msstate.edu), CrocGenomes (www.crocgenomes.org), CottonGen (www.cottongen.org), VetBioBase (http://vetbiobase.igbb.msstate.edu), and the National Center for Biotechnology Information (NCBI; www.ncbi.nlm.nih.gov). What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period we plan to focus on expanding the IGBB's computational biology expertise and strengthening our partnerships with federal and state agencies.

        Impacts
        What was accomplished under these goals? Below is a list of our major project goals (1-5). Each goal is followed by accomplishments (each delineated by a bullet) made over the course of the last year. (1) Conducting scientific research that meets the needs of society and further enhances the unique strengths of MS State. • The IGBB employed 21.5 people (FTE) during the period in question. In doing so, the IGBB helped strengthen MS State and the local/state economies. • The IGBB's total expenditures were $2.2 million. • IGBB scientists published eight method/tool development papers in FY21. Specifically, these papers describe (a) new formulations for use in southern pine beetle traps, (b) software that can scan photos and automatically classify trees, (c) a technique for preventing biofilm formation, (d) a method for cryopreserving fish sperm, (e) a strategy for using drones to more efficiently find radio-collared animals, (f) a procedure for limiting damage caused by the red-legged ham beetle, (g) a process to preserve individual bacteria and microbiome samples for nucleic acid analyses, and (h) a procedure for better preservation of pork sausage. • The IGBB received a second contract from the Mississippi Department of Marine Resources. With these funds we are studying genetic diversity and population structure in Atlantic bottlenose dolphin (Tursiops truncatus) and Kemp's ridley sea turtle (Lepidochelys kempii). • We received a new contract to work with the U.S. Army Corps of Engineers (USACE) Engineering Research and Development Center (ERDC) in Vicksburg, MS. Through this contract the IGBB conducts sequencing and computational biology research in collaboration with the ERDC's ecology team. The goal of the project is to explore the effects of per- and polyfluoroalkyl substances on aquatic species. (2) Attracting and retaining outstanding faculty and students at MS State. • The IGBB employs Drs. Tibor Pechan, Nina Aboughanem, George Popescu, and Shankar Shanmugam as research faculty. • The IGBB employs Dr. Chuan-Yu Hsu, Dr. Olga Pechanova, Dr. Ramey "Cal" Youngblood, and Dr. Zenaida Magbanua, as full-time senior research associates. • The IGBB employs Dr. Adam Thrash and Mr. Tony Arick as full-time computer specialists. • The IGBB invested in the research programs of several MS State departmental faculty including Dr. Li Zhang (Poultry Science), Dr. Xue Zhang and Dr. Wes Schilling (Food Science, Nutrition & Health Promotion), Dr. Austin Himes (Forestry), Dr. Te-Ming Tseng (Plant and Soil Sciences), Dr. Jeffrey Dean and Dr. Sorina Popescu (Biochemistry, Molecular Biology, Entomology and Plant Pathology), and Dr. Benjamin Magbanua (Civil & Environmental Engineering). • The IGBB has provided opportunities for three graduate students to earn their Ph.D. degrees. These students are/were funded through extramural awards to the IGBB. • The IGBB has continued to invest in purchase and maintenance of state-of-the-art equipment as a means of creating research opportunities and attracting/retaining faculty. In FY21 the IGBB purchased service contracts for their LTQ Orbitrap Velos mass spectrometer, their Illumina MiSeq DNA sequencer, and their Oxford Nanopore Technologies GridIONx5 DNA sequencer. In addition, the IGBB purchased a liquid handling system. (3) Offering researchers at MS State and elsewhere the opportunity to collaborate with the IGBB's genomics, proteomics, and computational biology experts. • Records showed that the IGBB conducted 50 separately invoiced service projects with a total net value of $153,275. • Service Center records show that service jobs were submitted by 14 different PIs representing twelve different MS State departments. • Additionally, Service Center work was done for one researcher at Palacky University (Olomouc, Czech Republic), a scientist at the Slovak Academy of Sciences (Bratislava, Slovakia), and the toxicology group of the U.S. Army Corps of Engineers. • Service Center and computer usage records indicate that the institute conducted collaborative research with roughly 35 different PIs. (4) Helping principal investigators leverage the experience and expertise of the IGBB to make their research programs more productive, increase the number and scientific impact of their publications, and enhance their ability to procure extramural funding. • Several new local/state/federal grants (net value = $1.2 M) were obtained by IGBB faculty. • 150 peer-reviewed manuscripts were published by IGBB-affiliated scientists during the fiscal year. (5) Supporting educational activities that enhance the abilities of students and faculty to succeed in the multidisciplinary fields of computational biology, genomics, and biotechnology. • See Opportunities for Training and Professional Development below.

        Publications

        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Liu Y, Zhou Y, Qiao J, Yu W, Pan X, Zhang T, Liu Y, Lu S-E (2021) Phenazine-1-carboxylic acid produced by Pseudomonas chlororaphis YL-1 is effective against acidovorax citrulli. Microorganisms 9(10): 2012. doi:10.3390/microorganisms9102012
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Bertioli DJ, Clevenger J, Godoy IJ, Stalker HT, Wood S, Santos JF, Ballen-Taborda C, Abernathy B, Azevedo V, Campbell J, Chavarro C, Chu Y, Farmer AD, Fonceka D, Gao D, Grimwood J, Halpin N, Korani W, Michelotto MD, Ozias-Akins P, Vaughn J, Youngblood R, Moretzsohn MC, Wright GC, Jackson SA, Cannon SB, Scheffler BE, Leal-Bertioli SCM (2021) Legacy genetics of Arachis cardenasii in the peanut crop shows the profound benefits of international seed exchange. Proceedings of the National Academy of Sciences of the United States of America 118(38): e2104899118. doi:10.1073/pnas.2104899118
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Smith JH, Coyle DR, Thomason JW, Matthews T, Riggins JJ (2021) Geocaching: A New Instructional Tool for Natural Resources Extension and Outreach. Journal of Extension 59(3): 16. doi:10.34068/joe.59.03.16
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Wang Y, Wang H, Peng Z (2021) Rice diseases detection and classification using attention based neural network and bayesian optimization. Expert Systems with Applications 178: 114770. doi:10.1016/j.eswa.2021.114770
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zoong Lwe Z, Sah S, Persaud L, Li J, Gao W, Raja Reddy K, Narayanan S (2021) Alterations in the leaf lipidome of Brassica carinata under high-temperature stress. BMC Plant Biology 21(1): 404. doi:10.1186/s12870-021-03189-x
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Grover CE, Yuan D, Arick MA, Miller ER, Hu G, Peterson DG, Wendel JF, Udall JA (2021) The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility. G3: Genes, Genomes, Genetics 11(11): jkab319. doi:10.1093/g3journal/jkab319
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Adriaenssens EM, Alfenas-Zerbini P, Davison AJ, Dempsey DM, Dutilh BE, Garcia ML, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Krupovic M, Kuhn JH, Lambert AJ, Lobocka M, Nibert ML, Oksanen HM, Orton RJ, Robertson DL, Rubino L, Sabanadzovic S, Simmonds P, Smith DB, Suzuki N, Van Dooerslaer K, Vandamme A-M, Varsani A, Zerbini FM (2021) Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021). Archives of Virology 166(9): 2633-2648. doi:10.1007/s00705-021-05156-1
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Sayed M, Ozdemir O, Essa M, Olivier A, Karsi A, Lawrence ML, Abdelhamed H (2021) Virulence and live vaccine potential of Edwardsiella piscicida phoP and phoQ mutants in catfish against edwardsiellosis. Journal of Fish Diseases 44(9): 1463-1474. doi:10.1111/jfd.13453
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Martini LFD, Roma-Burgos N, Tseng T-M, V Fipke M, A Noldin J, A de Avila L (2021) Acclimation to cold stress reduces injury from low temperature and bispyribac-sodium on rice. Pest Management Science 77(9): 4016-4025. doi:10.1002/ps.6425
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tan Y, Chang SKC (2021) Protein extraction pH and cross-linking affect physicochemical and textural properties of protein gels made from channel catfish by-products. Journal of the Science of Food and Agriculture 101(11): 4799-4807. doi:10.1002/jsfa.11126
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zhong H, Liu S, Sun T, Kong W, Deng X, Peng Z, Li Y (2021) Multi-locus genome-wide association studies for five yield-related traits in rice. BMC Plant Biology 21(1): 364. doi:10.1186/s12870-021-03146-8
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Manu N, Schilling MW, Phillips TW (2021) Natural and synthetic repellents for pest management of the storage mite Tyrophagus putrescentiae (Schrank) (sarcoptiformes: Acaridae). Insects 12(8): 711. doi:10.3390/insects12080711
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tice AK, Zihala D, Panek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Elias M, Eme L, Roger AJ, Rokas A, Shen X-X, Strassert JFH, Kol�sko M, Brown MW (2021) PhyloFisher: A phylogenomic package for resolving eukaryotic relationships. PLoS Biology 19(8): e3001365. doi:10.1371/journal.pbio.3001365
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tan Y, Tam CC, Rolston M, Alves P, Chen L, Meng S, Hong H, Chang SKC, Yokoyama W (2021) Quercetin ameliorates insulin resistance and restores gut microbiome in mice on high-fat diets. Antioxidants 10(8): 1251. doi:10.3390/antiox10081251
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Vines PL, Hoffmann FG, Meyer F, Allen TW, Tomaso-Peterson M (2021) Gaeumannomyces nanograminis, sp. nov., a hyphopodiate fungus identified from diseased roots of ultradwarf bermudagrass in the United States. Mycologia 113(5): 938-948. doi:10.1080/00275514.2021.1911192
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Benova-Liszekova D, Mentelova L, Babisova K, Beno M, Pechan T, Chase BA, Farkas R (2021) An apocrine mechanism delivers a fully immunocompetent exocrine secretion. Scientific Reports 11(1): 15915. doi:10.1038/s41598-021-95309-8
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kode D, Nannapaneni R, Chang S (2021) Low-level tolerance to antibiotic trimethoprim in qac-adapted subpopulations of listeria monocytogenes. Foods 10(8): 1800. doi:10.3390/foods10081800
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Shmulsky R, Franca FJN, Ratcliff JT, Farber B, Senalik CA, Ross RJ, Seale RD (2021) Compression properties of small clear southern yellow pine specimens tested across five decades. Forest Products Journal 71(3): 240-245. doi:10.13073/FPJ-D-20-00039
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zhong H, Liu S, Zhao G, Zhang C, Peng Z, Wang Z, Yang J, Li Y (2021) Genetic Diversity Relationship Between Grain Quality and Appearance in Rice. Frontiers in Plant Science 12: 708996. doi:10.3389/fpls.2021.708996
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fatemi SA, Elliott KEC, Bello A, Zhang H, Alqhtani A, Peebles ED (2021) Effects of the in ovo injection of vitamin D3 and 25-hydroxyvitamin D3 in Ross 708 broilers subsequently fed commercial or calcium and phosphorus-restricted diets. II. Immunity and small intestine morphology1,2,3. Poultry Science 100(8): 101240. doi:10.1016/j.psj.2021.101240
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kang S, Tice AK, Stairs CW, Jones RE, Lahr DJG, Brown MW (2021) The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae. Current Biology 31(14): 3073-3085.e3. doi:10.1016/j.cub.2021.04.076
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fatemi SA, Alqhtani A, Elliott KEC, Bello A, Zhang H, Peebles ED (2021) Effects of the in ovo injection of vitamin D3 and 25-hydroxyvitamin D3 in Ross 708 broilers subsequently fed commercial or calcium and phosphorus-restricted diets. I. Performance, carcass characteristics, and incidence of woody breast myopathy1,2,3. Poultry Science 100(8): 101220. doi:10.1016/j.psj.2021.101220
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fancher CA, Thames HT, Colvin MG, Zhang L, Nuthalapati N, Kiess A, Dinh TTN, Sukumaran AT (2021) Research Note: Prevalence and molecular characteristics of Clostridium perfringens in "no antibiotics ever" broiler farms. Poultry Science 100(11): 101414. doi:10.1016/j.psj.2021.101414
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Mohammadi-Aragh MK, Stokes CE, Street JT, Linhoss JE (2021) Effects of loblolly pine biochar and wood vinegar on poultry litter nutrients and microbial abundance. Animals 11(8): 2209. doi:10.3390/ani11082209
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kakar N, Bheemanahalli R, Jumaa S, Redona E, Warburton ML, Reddy KR (2021) Assessment of agro-morphological, physiological and yield traits diversity among tropical rice. PeerJ 9: e11752. doi:10.7717/peerj.11752
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Maroti Z, Tombacz D, Moldovan N, Torma G, Jefferson VA, Csabai Z, Gulyas G, Dormo A, Boldogkoi M, Kalmar T, Meyer F, Boldogkoi Z (2021) Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing. Scientific Reports 11(1): 14219. doi:10.1038/s41598-021-93142-7
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Chupeerach C, Tapanee P, On-Nom N, Temviriyanukul P, Chantong B, Reeder N, Adegoye GA, Tolar-Peterson T (2021) The influence of TAS2R38 bitter taste gene polymorphisms on obesity risk in three racially diverse groups. BioMedicine (Taiwan) 11(3): 7. doi:10.37796/2211-8039.1175
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Ayubov MS, Norov TM, Saha S, Tseng T-M, Reddy KR, Jenkins JN, Abdurakhmonov IY, Stelly DM (2021) Alteration of root and shoot morphologies by interspecific replacement of individual Upland cotton chromosome or chromosome segment pairs. Euphytica 217(7): 154. doi:10.1007/s10681-021-02771-6
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Jinnoros J, Innawong B, Udomkun P, Parakulsuksatid P, Silva JL (2021) The feasibility of using pulsed-vacuum in stimulating calcium-alginate hydrogel balls. Foods 10(7): 1521. doi:10.3390/foods10071521
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Bobadilha GS, Stokes CE, Verly Lopes DJ (2021) Artificial neural networks modelling based on visual analysis of coated cross laminated timber (CLT) to predict color change during outdoor exposure. Holzforschung 75(7): 646-654. doi:10.1515/hf-2020-0193
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zhang Y, Chang SKC (2021) Protein extraction from catfish byproducts and physicochemical properties of the protein isolates. Journal of Food Science 86(7): 3061-3074. doi:10.1111/1750-3841.15805
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Huang Y-C, Wu T-L, Zeng H, Cheng W-H (2021) Dietary Selenium Requirement for the Prevention of Glucose Intolerance and Insulin Resistance in Middle-Aged Mice. Journal of Nutrition 151(7): 1894-1900. doi:10.1093/jn/nxab053
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Neander C, Baker J, Kelsey K, Feugang J, Perry E (2021) A comparison of black vs. yellow coat color on rectal and gastrointestinal temperature in Labrador retrievers. Journal of Veterinary Behavior 44: 62-68. doi:10.1016/j.jveb.2021.03.003
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Shih M-K, Tain Y-L, Chen Y-W, Hsu W-H, Yeh Y-T, Chang SKC, Liao J-X, Hou C-Y (2021) Resveratrol butyrate esters inhibit obesity caused by perinatal exposure to bisphenol a in female offspring rats. Molecules 26(13): 4010. doi:10.3390/molecules26134010
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Ozbek M, Hitit M, Kaya A, Jousan FD, Memili E (2021) Sperm Functional Genome Associated with Bull Fertility. Frontiers in Veterinary Science 8: 610888. doi:10.3389/fvets.2021.610888
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Wang X, Zhao D, Farnell MB, Milby AC, Archer GS, Peebles ED, Gurung S (2021) Evaluation of euthanasia methods on behavioral and physiological responses of newly hatched male layer chicks. Animals 11(6): 1802. doi:10.3390/ani11061802
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Whalen A, Catchot AL, Jr, Gore J, Stewart SD, Lorenz GM, Cook DR, Musser FR, Harris JW, Krishnan N (2021) Temporal profile of neonicotinoid concentrations in cotton, corn, and soybean resulting from insecticidal seed treatments. Agronomy 11(6): 1200. doi:10.3390/agronomy11061200
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Sullivan BT, Shepherd WP, Nowak JT, Clarke SR, Merten PR, Billings RF, Upton WW, Riggins JJ, Brownie C (2021) Alternative Formulations of Trap Lures for Operational Detection, Population Monitoring, and Outbreak Forecasting of Southern Pine Beetle in the United States. Journal of Economic Entomology 114(3): 1189-1200. doi:10.1093/jee/toab062
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kalindamar S, Abdelhamed H, Kordon AO, Pinchuk LM, Karsi A (2021) Hemolysin Co-regulated Family Proteins Hcp1 and Hcp2 Contribute to Edwardsiella ictaluri Pathogenesis. Frontiers in Veterinary Science 8: 681609. doi:10.3389/fvets.2021.681609
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Skern T, Sabanadzovic S (2021) 30 years of Virology Division News in Archives of Virology. Archives of Virology 166(6): 1529-1531. doi:10.1007/s00705-021-05050-w
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Gunn MA, Allen PJ, Graham Rosser T, Wise DJ, Griffin MJ (2021) Comparative Mortality of Juvenile Channel and Hybrid Catfish Exposed to Bolbophorus damnificus Cercariae. North American Journal of Aquaculture 83(4): 346-353. doi:10.1002/naaq.10202
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Werle IS, Zanon AJ, Streck NA, Schaedler CE, Porta FSD, Barbieri GF, Ulguim ADR, Tseng TM (2021) Technology levels in cassava cultivation alter phytosociology of weeds. HortScience 56(7): 787. doi:10.21273/HORTSCI15643-20
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tapanee P, Tidwell DK, Schilling MW, Peterson DG, Tolar-Peterson T (2021) Genetic Variation in Taste Receptor Genes (SCNN 1 B, TRPV 1) and Its Correlation with the Perception of Saltiness in Normotensive and Hypertensive Adults. International Journal of Hypertension 2021: 5559831. doi:10.1155/2021/5559831
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Dhungel L, Burcham L, Park JY, Sampathkumar HD, Cudjoe A, Seo KS, Jordan H (2021) Responses to chemical cross-talk between the Mycobacterium ulcerans toxin, mycolactone, and Staphylococcus aureus. Scientific Reports 11(1): 11746. doi:10.1038/s41598-021-89177-5
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Ravindran P, Owens FC, Wade AC, Vega P, Montenegro R, Shmulsky R, Wiedenhoeft AC (2021) Field-Deployable Computer Vision Wood Identification of Peruvian Timbers. Frontiers in Plant Science 12: 647515. doi:10.3389/fpls.2021.647515
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Stanton BJ, Bourque A, Coleman M, Eisenbies M, Emerson RM, Espinoza J, Gantz C, Himes A, Rodstrom A, Shuren R, Stonex R, Volk T, Zerpa J (2021) The practice and economics of hybrid poplar biomass production for biofuels and bioproducts in the Pacific Northwest. Bioenergy Research 14(2): 543-560. doi:10.1007/s12155-020-10164-1
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Mehinto AC, Thornton Hampton LM, Vidal-Dorsch DE, Garcia-Reyero N, Arick-2nd MA, Maruya KA, Lao W, Vulpe CD, Brown-Augustine M, Loguinov A, Bay SM (2021) Transcriptomic response patterns of hornyhead turbot (Pleuronichthys verticalis) dosed with polychlorinated biphenyls and polybrominated diphenyl ethers. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics 38: 100822. doi:10.1016/j.cbd.2021.100822
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Barickman TC, Olorunwa OJ, Sehgal A, Walne CH, Reddy KR, Gao W (2021) Yield, physiological performance, and phytochemistry of basil (Ocimum basilicum l.) under temperature stress and elevated co2 concentrations. Plants 10(6): 1072. doi:10.3390/plants10061072
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Bheemanahalli R, Gajanayake B, Lokhande S, Singh K, Seepaul R, Collins P, Reddy KR (2021) Physiological and pollen-based screening of shrub roses for hot and drought environments. Scientia Horticulturae 282: 110062. doi:10.1016/j.scienta.2021.110062
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Madsen JD, Wersal RM, Schmid SA, Thum RA, Welch ME, Phuntumart V (2021) The identification of watermilfoil, discovery of hybrid watermilfoil, and their implications for aquatic plant management in the Clark Fork River, Western MT, USA. Journal of Freshwater Ecology 36(1): 111-124. doi:10.1080/02705060.2021.1908919
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Shirley CA, Allen PJ (2021) White Crappie (Pomoxis annularis) latency period following hormone administration is predictable and independent of diel injection time. Aquaculture Research 52(5): 2305-2312. doi:10.1111/are.15082
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Barickman TC, Olorunwa OJ, Sehgal A, Walne CH, Reddy KR, Gao W (2021) Interactive impacts of temperature and elevated co2 on basil (Ocimum basilicum l.) root and shoot morphology and growth. Horticulturae 7(5): 112. doi:10.3390/horticulturae7050112
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: De Jong GD, Meyer F, Goddard J (2021) Relative Roles of Blow Flies (Diptera: Calliphoridae) and Invasive Fire Ants (Hymenoptera: Formicidae: Solenopsis spp.) in Carrion Decomposition. Journal of Medical Entomology 58(3): 1074-1082. doi:10.1093/jme/tjab014
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Hearst S, Bednarova A, Draughn B, Johnson K, Mills D, Thomas C, Scales J, Keenan ET, Welcher JV, Krishnan N (2021) Expression of Drosophila Matrix Metalloproteinases in Cultured Cell Lines Alters Neural and Glial Cell Morphology. Frontiers in Cell and Developmental Biology 9: 610887. doi:10.3389/fcell.2021.610887
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tang X, Shen Y, Zhang Y, Schilling MW, Li Y (2021) Parallel comparison of functional and physicochemical properties of common pulse proteins. LWT - Food Science and Technology 146: 111594. doi:10.1016/j.lwt.2021.111594
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Takac T, Krenek P, Komis G, Vadovic P, Ovecka M, Ohnoutkova L, Pechan T, Kasparek P, Ticha T, Basheer J, Arick-2nd M, Samaj J (2021) TALEN-Based HvMPK3 Knock-Out Attenuates Proteome and Root Hair Phenotypic Responses to flg22 in Barley. Frontiers in Plant Science 12: 666229. doi:10.3389/fpls.2021.666229
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Scott MA, Woolums AR, Swiderski CE, Perkins AD, Nanduri B, Smith DR, Karisch BB, Epperson WB, Blanton JR (2021) Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality. PLoS ONE 16(Apr 4): e0250758. doi:10.1371/journal.pone.0250758
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Grover CE, Yuan D, Arick-2nd MA, Miller ER, Hu G, Peterson DG, Wendel JF, Udall JA (2021) The Gossypium stocksii genome as a novel resource for cotton improvement. G3: Genes, Genomes, Genetics 11(7): jkab125. doi:10.1093/g3journal/jkab125
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Evans HC, Dinh TTN, Hardcastle ML, Gilmore AA, Ugur MR, Hitit M, Jousan FD, Nicodemus MC, Memili E (2021) Advancing Semen Evaluation Using Lipidomics. Frontiers in Veterinary Science 8: 601794. doi:10.3389/fvets.2021.601794
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Gao G, Magadan S, Waldbieser GC, Youngblood RC, Wheeler PA, Scheffler BE, Thorgaard GH, Palti Y (2021) A long reads-based de-novo assembly of the genome of the Arlee homozygous line reveals chromosomal rearrangements in rainbow trout. G3: Genes, Genomes, Genetics 11(4): jkab052. doi:10.1093/g3journal/jkab052
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kim S, Meyers SL, Silva JL, Schilling MW, Wood LS (2021) Sensory and nutritional characteristics of concept frozen desserts made from underutilized sweetpotato roots. HortTechnology 31(3): 259-265. doi:10.21273/HORTTECH04725-20
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Catchot BD, Musser FR, Gore J, Krishnan N, Cook DR, Stewart SD, Lorenz GM, Brown S, Seiter N, Catchot AL, Kerns DL, Jackson R, Knighten KS (2021) Sublethal Impacts of Novaluron on Tarnished Plant Bug (Hemiptera: Miridae) Adults. Journal of Economic Entomology 114(2): 739-746. doi:10.1093/jee/toab007
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Cheng W-H (2021) Revisiting Selenium Toxicity. Journal of Nutrition 151(4): 747-748. doi:10.1093/jn/nxaa433
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tombacz D, Moldovan N, Torma G, Nagy T, Hornyak A, Csabai Z, Gulyas G, Boldogkoi M, Jefferson VA, Zadori Z, Meyer F, Boldogkoi Z (2021) Dynamic Transcriptome Sequencing of Bovine Alphaherpesvirus Type 1 and Host Cells Carried Out by a Multi-Technique Approach. Frontiers in Genetics 12: 619056. doi:10.3389/fgene.2021.619056
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Abdelhamed H, Nho SW, Karsi A, Lawrence ML (2021) The role of denitrification genes in anaerobic growth and virulence of Flavobacterium columnare. Journal of Applied Microbiology 130(4): 1062-1074. doi:10.1111/jam.14855
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Shirley CA, Colvin ME, Tiersch TR, Allen PJ (2021) A generalized approach for sperm cryopreservation in the genus Pomoxis: Sperm cryopreservation and fertilization efficiency of black-stripe black crappie, Pomoxis nigromaculatus. Journal of the World Aquaculture Society 52(2): 405-417. doi:10.1111/jwas.12763
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Gunn MA, Allen PJ, Rosser TG, Wise DJ, Khoo LH, Griffin MJ (2021) Assessment of Bolbophorus damnificus prevalence and cercariae shedding in Planorbella trivolvis populations from catfish aquaculture ponds in Mississippi, USA. Journal of the World Aquaculture Society 52(2): 395-404. doi:10.1111/jwas.12756
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Iannetta AA, Rogers HT, Al-Mohanna T, O'Brien JN, Wommack AJ, Popescu SC, Hicks LM (2021) Profiling thimet oligopeptidase-mediated proteolysis in Arabidopsis thaliana. Plant Journal 106(2): 336-350. doi:10.1111/tpj.15165
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Signore AV, Tift MS, Hoffmann FG, Schmitt TL, Moriyama H, Storz JF (2021) Evolved increases in hemoglobin-oxygen affinity and the Bohr effect coincided with the aquatic specialization of penguins. Proceedings of the National Academy of Sciences of the United States of America 118(13): e2023936118. doi:10.1073/pnas.2023936118
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zhang B, Zhang X, Schilling MW, Li X, Tabler GT, Peebles ED, Zhai W (2021) Effects of broiler genetic strain and dietary amino acid reduction on meat yield and quality (part II). Poultry Science 100(4): 101033. doi:10.1016/j.psj.2021.101033
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: de Azevedo Viana AG, Ribeiro IM, Rodrigues Carvalho RP, Memili E, Moura AA, Machado-Neves M (2021) Functional attributes of seminal proteins in bull fertility: A systematic review. Reproduction 161(4): 459-475. doi:10.1530/REP-20-0392
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Liu Y, Dai C, Zhou Y, Qiao J, Tang B, Yu W, Zhang R, Liu Y, Lu S-E (2021) Pyoverdines Are Essential for the Antibacterial Activity of Pseudomonas chlororaphis YL-1 under Low-Iron Conditions. Applied and Environmental Microbiology 87(7): 1-17. doi:10.1128/AEM.02840-20
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tain Y-L, Chang SKC, Liao J-X, Chen Y-W, Huang H-T, Li Y-L, Hou C-Y (2021) Synthesis of short?chain?fatty?acid resveratrol esters and their antioxidant properties. Antioxidants 10(3): 420. doi:10.3390/antiox10030420
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Tucker LJ, Grant CS, Gautreaux MA, Amarasekara DL, Fitzkee NC, Janorkar AV, Varadarajan A, Kundu S, Priddy LB (2021) Physicochemical and Antimicrobial Properties of Thermosensitive Chitosan Hydrogel Loaded with Fosfomycin. Marine Drugs 19(3): 144. doi:10.3390/md19030144
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Kordon AO, Abdelhamed H, Karsi A, Pinchuk LM (2021) Adaptive immune responses in channel catfish exposed to Edwardsiella ictaluri live attenuated vaccine and wild type strains through the specific gene expression profiles. Developmental and Comparative Immunology 116: 103950. doi:10.1016/j.dci.2020.103950
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Dhahir N, Feugang J, Witrick K, Park S, White S, AbuGhazaleh A (2021) The effect of different ultraviolet-C light doses on microbial reduction and the components of camel milk. Food Science and Technology International 27(2): 99-111. doi:10.1177/1082013220935230
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Hasan MM, Aikins MJ, Schilling MW, Phillips TW (2021) Sulfuryl fluoride as a methyl bromide alternative for fumigation of Necrobia rufipes (Coleoptera: Cleridae) and Tyrophagus putrescentiae (Sarcoptiformes: Acaridae), major pests of animal-based stored products. Journal of Stored Products Research 91: 101769. doi:10.1016/j.jspr.2021.101769
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Sokale AO, Williams CJ, Hoerr FJ, Collins KEC, Peebles ED (2021) Effects of administration of an in ovo coccidiosis vaccine at different embryonic ages on vaccine cycling and performance of broiler chickens. Poultry Science 100(3): 100914. doi:10.1016/j.psj.2020.11.078
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Sharma MK, White D, Chen C, Kim WK, Adhikari P (2021) Effects of the housing environment and laying hen strain on tibia and femur bone properties of different laying phases of Hy-Line hens. Poultry Science 100(3): 100933. doi:10.1016/j.psj.2020.12.030
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zangoueinejad R, Alebrahim MT, Tseng T-M (2021) Absorption and translocation of dicamba in dicamba-tolerant wild tomato. Canadian Journal of Plant Science 101(1): 30-38. doi:10.1139/cjps-2019-0314
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Bobadilha GS, Stokes CE, Ohno KM, Kirker G, Lopes DJV, Nejad M (2021) Physical, optical, and visual performance of coated cross-laminated timber during natural and artificial weathering. Coatings 11(2): 252. doi:10.3390/coatings11020252
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Aldwairi T, Chevalier DJ, Perkins AD (2021) Exploring the effect of climate factors on snps within fha domain genes in eurasian arabidopsis ecotypes. Agriculture (Switzerland) 11(2): 166. doi:10.3390/agriculture11020166
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Mousa AA, Ramachandran R, Ozdemir O, Karsi A, Abdelhamed H (2021) Dietary trans-cinnamaldehyde improves oxidative stress response of channel catfish (Ictalurus punctatus) following Edwardsiella ictaluri infection. Aquaculture 532: 735985. doi:10.1016/j.aquaculture.2020.735985
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Peebles ED, Oliveira TFB, Kim EJ, Olojede OC, Elliott KEC, Lindsey LL, Gerard PD (2021) Research Note: Effects of the in ovo injection of organic zinc, manganese, and copper and posthatch holding time before placement on broiler body temperature during grow out. Poultry Science 100(2): 755-759. doi:10.1016/j.psj.2020.10.048
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Allen PJ, Brokordt K, Oliva M, Alveal K, Flores H, Alvarez CA (2021) Physiological insights for aquaculture diversification: Swimming capacity and efficiency, and metabolic scope for activity in cojinoba Seriolella violacea. Aquaculture 531: 735968. doi:10.1016/j.aquaculture.2020.735968
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Hamidzadeh Moghadam S, Alebrahim MT, Tobeh A, Mohebodini M, Werck-Reichhart D, MacGregor DR, Tseng TM (2021) Redroot Pigweed (Amaranthus retroflexus L.) and Lamb's Quarters (Chenopodium album L.) Populations Exhibit a High Degree of Morphological and Biochemical Diversity. Frontiers in Plant Science 12: 593037. doi:10.3389/fpls.2021.593037
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Zhong H, Liu S, Meng X, Sun T, Deng Y, Kong W, Peng Z, Li Y (2021) Uncovering the genetic mechanisms regulating panicle architecture in rice with GPWAS and GWAS. BMC Genomics 22(1): 86. doi:10.1186/s12864-021-07391-x
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Thomason JW, Clarke S, Riggins JJ (2021) Evaluation of Phenological Indicators for Optimizing Spring Southern Pine Beetle (Coleoptera: Curculionidae: Scolytinae) Trapping Surveys. Florida Entomologist 103(4): 444-451. doi:10.1653/024.103.00405
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Merritt LH, Brown-Johnson AE, Meredith AN, Ferguson JC (2021) Comparison of Efficacy and Detection of Clethodim and Glyphosate Applied with Dicamba and 2,4-D through Tank Mixture and Sequential Applications. Journal of Agricultural and Food Chemistry 69(1): 101-111. doi:10.1021/acs.jafc.0c05541
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Pokhrel S, Kingery WL, Cox MS, Shankle MW, Shanmugam SG (2021) Impact of cover crops and poultry litter on selected soil properties and yield in dryland soybean production. Agronomy 11(1): 119. doi:10.3390/agronomy11010119
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Reddy KR, Seghal A, Jumaa S, Bheemanahalli R, Kakar N, Redona ED, Wijewardana C, Alsajri FA, Chastain D, Gao W, Taduri S, Lone AA (2021) Morpho-physiological characterization of diverse rice genotypes for seedling stage high-and low-temperature tolerance. Agronomy 11(1): 112. doi:10.3390/agronomy11010112
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Cui L, Chang SKC, Nannapaneni R (2021) Comparative studies on the effect of probiotic additions on the physicochemical and microbiological properties of yoghurt made from soymilk and cow's milk during refrigeration storage (R2). Food Control 119: 107474. doi:10.1016/j.foodcont.2020.107474
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        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Al-Mohanna T, Nejat N, Iannetta AA, Hicks LM, Popescu GV, Popescu SC (2021) Arabidopsis thimet oligopeptidases are redox-sensitive enzymes active in the local and systemic plant immune response. Journal of Biological Chemistry 296: 100695. doi:10.1016/j.jbc.2021.100695
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Chen W, Nichols L, Brinkley F, Bohna K, Tian W, Priddy MW, Priddy LB (2021) Alkali treatment facilitates functional nano-hydroxyapatite coating of 3D printed polylactic acid scaffolds. Materials Science and Engineering C 120: 111686. doi:10.1016/j.msec.2020.111686
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Zhang X, Elsayed I, Song X, Shmulsky R, Hassan EB (2020) Microporous carbon nanoflakes derived from biomass cork waste for CO2 capture. Science of the Total Environment 748: 142465. doi:10.1016/j.scitotenv.2020.142465
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        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Evans HC, Dinh TTN, Ugur MR, Hitit M, Sajeev D, Kaya A, Topper E, Nicodemus MC, Smith GD, Memili E (2020) Lipidomic markers of sperm cryotolerance in cattle. Scientific Reports 10(1): 20192. doi:10.1038/s41598-020-77089-9
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Lawal HM, Schilde C, Kin K, Brown MW, James J, Prescott AR, Schaap P (2020) Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia. Scientific Reports 10(1): 8797. doi:10.1038/s41598-020-65709-3
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Gomes FP, Park R, Viana AG, Fernandez-Costa C, Topper E, Kaya A, Memili E, Yates-3rd JR, Moura AA (2020) Protein signatures of seminal plasma from bulls with contrasting frozen-thawed sperm viability. Scientific Reports 10(1): 14661. doi:10.1038/s41598-020-71015-9
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Catchot B, Anderson CJH, Gore J, Jackson R, Rakshit K, Musser F, Krishnan N (2020) Novaluron prevents oogenesis and oviposition by inducing ultrastructural changes in ovarian tissue of young adult Lygus lineolaris. Pest Management Science 76(12): 4057-4063. doi:10.1002/ps.5960
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Kuhn JH, Adkins S, Alioto D, Alkhovsky SV, Amarasinghe GK, Anthony SJ, Avsic-Zupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Bartonicka T, Basler C, Bavari S, Beer M, Bente DA, Bergeron E, Bird BH, Blair C, Blasdell KR, Bradfute SB, Breyta R, Briese T, Brown PA, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buzkan N, Calisher CH, Cao M, Casas I, Chamberlain J, Chandran K, Charrel RN, Chen B, Chiumenti M, Choi I-R, Clegg JCS, Crozier I, da Graca JV, Dal Bo E, D�vila AMR, de la Torre JC, de Lamballerie X, de Swart RL, Di Bello PL, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolja VV, Dolnik O, Drebot MA, Drexler JF, Durrwald R, Dufkova L, Dundon WG, Duprex WP, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Fernandes J, Fooks AR, Formenty PBH, Forth LF, Fouchier RAM, Freitas-Astua J, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gbakima A, Goldstein T, Gonzalez J-PJ, Griffiths A, Groschup MH, Gunther S, Guterres A, Hall RA, Hammond J, Hassan M, Hepojoki J, Hepojoki S, Hetzel U, Hewson R, Hoffmann B, Hongo S, Hoper D, Horie M, Hughes HR, Hyndman TH, Jambai A, Jardim R, Jiang D, Jin Q, Jonson GB, Junglen S, Karadag S, Keller KE, Klempa B, Klingstrom J, Kobinger G, Kondo H, Koonin EV, Krupovic M, Kurath G, Kuzmin IV, Laenen L, Lamb RA, Lambert AJ, Langevin SL, Lee B, Lemos ERS, Leroy EM, Li D, Li J, Liang M, Liu W, Liu Y, Lukashevich IS, Maes P, Marciel de Souza W, Marklewitz M, Marshall SH, Martelli GP, Martin RR, Marzano S-YL, Massart S, McCauley JW, Mielke-Ehret N, Minafra A, Minutolo M, Mirazimi A, Muhlbach H-P, Muhlberger E, Naidu R, Natsuaki T, Navarro B, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Nylund A, Okland AL, Oliveira RC, Palacios G, Pallas V, Palyi B, Papa A, Parrish CR, Pauvolid-Correa A, Paweska JT, Payne S, Perez DR, Pfaff F, Radoshitzky SR, Rahman A-U, Ramos-Gonzalez PL, Resende RO, Reyes CA, Rima BK, Romanowski V, Robles Luna G, Rota P, Rubbenstroth D, Runstadler JA, Ruzek D, Sabanadzovic S, Salat J, Sall AA, Salvato MS, Sarpkaya K, Sasaya T, Schwemmle M, Shabbir MZ, Shi X, Sh� Z, Shirako Y, Simmonds P, Sirmarova J, Sironi M, Smither S, Smura T, Song J-W, Spann KM, Spengler JR, Stenglein MD, Stone DM, Strakova P, Takada A, Tesh RB, Thornburg NJ, Tomonaga K, Tordo N, Towner JS, Turina M, Tzanetakis I, Ulrich RG, Vaira AM, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, Wahl V, Walker PJ, Wang H, Wang J, Wang X, Wang L-F, Wei T, Wells H, Whitfield AE, Williams JV, Wolf YI, Wu Z, Yang X, Yang X, Yu X, Yutin N, Zerbini FM, Zhang T, Zhang Y-Z, Zhou G, Zhou X (2020) 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology 165(12): 3023-3072. doi:10.1007/s00705-020-04731-2
        • Type: Journal Articles Status: Published Year Published: 2021 Citation: Fatemi SA, Alqhtani AH, Elliott KEC, Bello A, Levy AW, Peebles ED (2021) Improvement in the performance and inflammatory reaction of Ross 708 broilers in response to the in ovo injection of 25-hydroxyvitamin D3. Poultry Science 100(1): 138-146. doi:10.1016/j.psj.2020.10.010
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Patro H, Reddy KR, Lokhande SB, Walker T (2020) Photosynthesis and morphological responses of rice cultivars to seedling stage soil N stress. Journal of Plant Nutrition 44(8): 1085-1094. doi:10.1080/01904167.2020.1862198
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Haenen O, Karunasagar I, Manfrin A, Zrncic S, Lavilla-Pitogo C, Lawrence M, Hanson L, Subasinghe R, Bondad-Reantaso MG, Karunasagar I (2020) Contact-zoonotic bacteria of warmwater ornamental and cultured fish. Asian Fisheries Science 33(S1): 39-45. doi:10.33997/j.afs.2020.33.S1.007
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Pruett S, Tan W, Howell-3rd GE, Nanduri B (2020) Dosage scaling of alcohol in binge exposure models in mice: An empirical assessment of the relationship between dose, alcohol exposure, and peak blood concentrations in humans and mice. Alcohol 89: 9-17. doi:10.1016/j.alcohol.2020.03.011
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Li T, Castaneda CD, Arick-2nd MA, Hsu C-Y, Kiess AS, Zhang L (2020) Complete genome sequence of multidrug-resistant avian pathogenic Escherichia coli strain APEC-O2-MS1170. Journal of Global Antimicrobial Resistance 23: 401-403. doi:10.1016/j.jgar.2020.11.009
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Campbell Y, Shao W, Dinh T, To K, Rogers W, Zhang X, Phillips T, Schilling W (2020) Use of nets treated with food grade coatings on controlling mold growth and mite infestation in dry-cured ham aging facilities. Journal of Stored Products Research 89: 101716. doi:10.1016/j.jspr.2020.101716
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Moldovan N, Torma G, Gulyas G, Hornyak A, Zadori Z, Jefferson VA, Csabai Z, Boldogkoi M, Tombacz D, Meyer F, Boldogkoi Z (2020) Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing. Scientific Reports 10(1): 20496. doi:10.1038/s41598-020-77520-1
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Zhang X, Cunningham FL, Li L, Hanson-Dorr K, Liu L, Waters K, Guan M, Olivier AK, Schmit BS, Nolting JM, Bowman AS, Torchetti MK, DeLiberto TJ, Wan X-F (2020) Tissue Tropisms of Avian Influenza A Viruses Affect Their Spillovers from Wild Birds to Pigs. Journal of Virology 94(24): e00847-20. doi:10.1128/JVI.00847-20
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Ravichandran A, Escano J, Lee JH, Ross MK, Austin F, Orugunty R, Lu S-E, Smith L (2020) Formulation, Pharmacological Evaluation, and Efficacy Studies of Occidiofungin, a Novel Antifungal. Antimicrobial Agents and Chemotherapy 64(12): e01737-20. doi:10.1128/AAC.01737-20
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Liao SF, Hasan MS, Yang Z, Stevens AW, Brett J, Peng Z (2020) Feeding arsenic-containing rice bran to growing pigs: Growth performance, arsenic tissue distribution, and arsenic excretion. International Journal of Environmental Research and Public Health 17(22): 1-14. doi:10.3390/ijerph17228530
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Salomaki ED, Eme L, Brown MW, Kolisko M (2020) Releasing uncurated datasets is essential for reproducible phylogenomics. Nature Ecology and Evolution 4(11): 1435-1437. doi:10.1038/s41559-020-01296-w
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Franca LX, Dodds DM, Reynolds DB, Bond JA, Mills A, Catchot AL, Peterson DG (2020) Influence of flooding period and seed burial depth on Palmer amaranth (Amaranthus palmeri) seed germination. Pest Management Science 76(11): 3832-3837. doi:10.1002/ps.5934
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Zeng H, Hamlin SK, Safratowich BD, Cheng W-H, Johnson LK (2020) Superior inhibitory efficacy of butyrate over propionate and acetate against human colon cancer cell proliferation via cell cycle arrest and apoptosis: linking dietary fiber to cancer prevention. Nutrition Research 83: 63-72. doi:10.1016/j.nutres.2020.08.009
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Adriaenssens EM, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Orton RJ, Rubino L, Sabanadzovic S, Simmonds P, Smith DB, Varsani A, Zerbini FM, Davison AJ (2020) Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020). Archives of Virology 165(11): 2737-2748. doi:10.1007/s00705-020-04752-x
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Reeder N, Tapanee P, Persell A, Tolar-Peterson T (2020) Food insecurity, depression, and race: Correlations observed among college students at a university in the Southeastern United States. International Journal of Environmental Research and Public Health 17(21): 1-11. doi:10.3390/ijerph17218268
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Arif AA, Maulana T, Kaiin EM, Purwantara B, Arifiantini RI, Memili E (2020) Comparative analysis of various step-dilution techniques on the quality of frozen Limousin bull semen. Veterinary World 13(11): 2422-2428. doi:10.14202/VETWORLD.2020.2422-2428
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Cheng W-H (2020) Placental telomere length: Linking maternal nutrition to transgenerational healthy aging?. Journal of Nutrition 150(10): 2619-2620. doi:10.1093/jn/nxaa277
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Cobb LH, McCabe EM, Priddy LB (2020) Therapeutics and delivery vehicles for local treatment of osteomyelitis. Journal of Orthopaedic Research 38(10): 2091-2103. doi:10.1002/jor.24689
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Fountain JC, Clevenger JP, Nadon B, Youngblood RC, Korani W, Chang P-K, Starr D, Wang H, Isett B, Richard Johnston H, Wiggins R, Agarwal G, Chu Y, Kemerait RC, Pandey MK, Bhatnagar D, Ozias-Akins P, Varshney RK, Scheffler BE, Vaughn JN, Guo B (2020) Two new aspergillus flavus reference genomes reveal a large insertion potentially contributing to isolate stress tolerance and aflatoxin production. G3: Genes, Genomes, Genetics 10(10): 3515-3531. doi:10.1534/g3.120.401405
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Telmadarrehei T, Tang JD, Raji O, Rezazadeh A, Narayanan L, Shmulsky R, Jeremic D (2020) A study of the gut bacterial community of reticulitermes virginicus exposed to Chitosan treatment. Insects 11(10): 1-17. doi:10.3390/insects11100681
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Fancher CA, Zhang L, Kiess AS, Adhikari PA, Dinh TTN, Sukumaran AT (2020) Avian pathogenic Escherichia coli and clostridium perfringens: Challenges in no antibiotics ever broiler production and potential solutions. Microorganisms 8(10): 1-27. doi:10.3390/microorganisms8101533
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Jumaa SH, Kakar N, Redona ED, Lone AA, Chastain D, Gao W, Warburton ML, Reddy KR (2020) Assessing the early-season vigor of a diverse rice population by using morphophysiological traits. Sabrao Journal of Breeding and Genetics 52(3): 248-270.
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Maafi N, Entsminger ED, Ingram-Jr LL, Nikolic DJ (2020) Assessment of volatile metabolites for in situ detection of fungal decay in wooden structures. Building and Environment 183: 107140. doi:10.1016/j.buildenv.2020.107140


        Progress 10/01/19 to 09/30/20

        Outputs
        Target Audience:The target audience for our research is diverse and includes plant and animal breeders, evolutionary biologists, plant and animal pathologists, pest/pathogen management personnel, farmers,ranchers, medical researchers,practicing doctors, computational biologists,bioinformaticians, ecologists, toxicologists, food scientists, poultry scientists, entomologists,nematologists, wildlife biologists, veterinary scientists, and practicing veterinarians. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?• The IGBB continued its active role in the University and Industry Consortium (UIC). The UIC is a group working to increase partnerships between agricultural, food, and biotechnology companies and land-grant institutions. The UIC began more than 20 years ago with Mississippi State serving as a founding member. The UIC provides opportunities for students and faculty to interact and develop research and educational collaborations with leaders in industry and academia. • The IGBB supported participation of research faculty, research associates, and students in a number of national and international scientific meetings. • The IGBB trained three graduate students and four undergraduate student workers in computational biology and molecular biology techniques. How have the results been disseminated to communities of interest?Results have been disseminated to the scientific community through peer-reviewed publications, book chapters, scientific meetings/presentations, faculty exchange programs, and the IGBB website (www.igbb.msstate.edu). In addition, DNA sequence and gene expression data were disseminated through AgBase (www.agbase.msstate.edu), CrocGenomes (www.crocgenomes.org), CottonGen (www.cottongen.org), VetBioBase (http://vetbiobase.igbb.msstate.edu), and the National Center for Biotechnology Information (NCBI; www.ncbi.nlm.nih.gov). What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period we plan to focus on expanding the IGBB's computational biology expertise and strengthening our partnerships with the USDA-ARS, the U.S. Forest Service, the U.S. Army Corps of Engineers (USACE), and the U.S. Agency for International Development (USAID).

        Impacts
        What was accomplished under these goals? Below is a list of our major project goals (1-5). Each goal is followed by accomplishments (each delineated by a bullet) made over the course of the last year. (1) Conducting scientific research that meets the needs of society and further enhances the unique strengths of MS State. • The IGBB employed 19.5 people (FTE) during the period in question. In doing so, the IGBB helped strengthen MS State and the local/state economies. • The IGBB's total expenditures were $2.2 million. • IGBB scientists published seven method development papers in FY20 that include information that will help (a) prevent mite infestation of dry cured ham, (b) make lumber more durable and fire resistant, (c) increase speed/accuracy of sperm cell assays, (d) facilitate study of allelopathy in commercially-important plants, (e) optimize protein extraction in sweetpotato, (f) improve gene variant testing in Edwardsiella piscicida, and (g) inhibit growth of foodborne bacteria. • The IGBB continued work on a Quick Start award from the USAID Fish Innovation Laboratory. Through this award we sequenced, assembled, and annotated the genome of rohu carp (Labeo rohita), an aquacultural species of interest in Asia and Africa. In addition, we performed genotyping-by-sequencing (GBS) analysis of 100 rohu. • The IGBB received a contract from the Mississippi Department of Marine Resources. With these funds we are studying genetic diversity and population structure in Atlantic bottlenose dolphin (Tursiops truncatus) and Kemp's ridley sea turtle (Lepidochelys kempii). • We are continuing work on a contract with the U.S. Army Corps of Engineers (USACE) Engineering Research and Development Center (ERDC) in Vicksburg, MS. Through this contract the IGBB conducts sequencing and computational biology research on aquatic toxicology in collaboration with the ERDC's ecology team. (2) Attracting and retaining outstanding faculty and students at MS State. • The IGBB employs Drs. Tibor Pechan, Nina Aboughanem, George Popescu, and Shankar Shanmugam as research faculty. • The IGBB employs Drs. Chuan-Yu Hsu, Olga Pechanova, Ramey "Cal" Youngblood, Zenaida Magbanua, Adam Thrash, and Mr. Tony Arick as full-time research associates. • The IGBB invested in the research programs of several MSU departmental faculty including Dr. Te-Ming Tseng (Plant and Soil Sciences), Dr. Jeffrey Dean, Dr. Sorina Popescu, Dr. Federico Hoffmann (Biochemistry, Molecular Biology, Entomology and Plant Pathology), Dr. Erdogan Memili, Dr. Jean Feugang (Animal and Dairy Sciences), Dr. Peter Allen (Wildlife, Fisheries and Aquaculture), Dr. Attila Karsi, and Dr. Mark Lawrence (CVM Comparative Biomedical Sciences). • The IGBB has provided opportunities for three graduate students to earn their Ph.D. degrees. These students are/were funded through extramural awards to the IGBB. • The IGBB has continued to invest in purchase and maintenance of state-of-the-art equipment as a means of creating research opportunities and attracting/retaining faculty. In FY20 the IGBB purchased service contracts for their LTQ Orbitrap Velos mass spectrometer, their Illumina MiSeq DNA sequencer, and their Oxford Nanopore Technologies GridIONx5 DNA sequencer. (3) Offering researchers at MS State and elsewhere the opportunity to collaborate with the IGBB's genomics, proteomics, and computational biology experts. • Records showed that the IGBB conducted 52 separately invoiced service projects with a total net value of $253,006. • Service Center records show that service jobs were submitted by 14 different PIs representing five different departments. • Additionally, work was done for one researcher at Palacky University (Olomouc, Czech Republic), a scientist at the Slovak Academy of Sciences (Bratislava, Slovakia), one U.S. Forest Service laboratory, and the toxicology group of the U.S. Army Corps of Engineers. • Service Center and computer usage records indicate that the institute conducted collaborative research with roughly 40 different MS State PIs. (4) Helping principal investigators leverage the experience and expertise of the IGBB to make their research programs more productive, increase the number and scientific impact of their publications, and enhance their ability to procure extramural funding. • Several new local/state/federal grants (net value = $1.2 M) were obtained by IGBB scientists. • 153 peer-reviewed manuscripts were published by IGBB-affiliated scientists during the fiscal year. Forty-one of these have SCOPUS 2-year citation indices > 4. (5) Supporting educational activities that enhance the abilities of students and faculty to succeed in the multidisciplinary fields of computational biology, genomics, and biotechnology. • See Opportunities for Training and Professional Development below.

        Publications

        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Schlievert PM, Kilgore SH, Seo KS, Leung DYM (2019) Glycerol Monolaurate Contributes to the Antimicrobial and Anti-inflammatory Activity of Human Milk. Scientific Reports 9(1): 14550. doi:10.1038/s41598-019-51130-y
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kakar N, Jumaa SH, Redona ED, Warburton ML, Reddy KR (2019) Evaluating rice for salinity using pot-culture provides a systematic tolerance assessment at the seedling stage. Rice 12(1): 57. doi:10.1186/s12284-019-0317-7
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ishak GMA, Dutra GA, Gastal GDA, Gastal MO, Feugang JM, Gastal EL (2019) Transition to the ovulatory season in mares: An investigation of antral follicle receptor gene expression in vivo. Molecular Reproduction and Development 86(12): 1832-1845. doi:10.1002/mrd.23277
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kutchy NA, Menezes ESB, Ugur MR, Ul Husna A, ElDebaky H, Evans HC, Beaty E, Santos FC, Tan W, Wills RW, Topper E, Kaya A, Moura AA, Memili E (2019) Sperm cellular and nuclear dynamics associated with bull fertility. Animal Reproduction Science 211: 106203. doi:10.1016/j.anireprosci.2019.106203
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Ozdemir O, Waldbieser G, Perkins AD, Lawrence ML, Karsi A (2019) Effects of florfenicol feeding on diversity and composition of the intestinal microbiota of channel catfish (Ictalurus punctatus). Aquaculture Research 50(12): 3663-3672. doi:10.1111/are.14325
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zangoueinejad R, Alebrahim MT, Tseng TM (2019) Evaluation of auxin tolerance in selected tomato germplasm under greenhouse and field conditions. Weed Technology 33(6): 815-822. doi:10.1017/wet.2019.51
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Alugubelly N, Mohammed AN, Edelmann MJ, Nanduri B, Sayed M, Park JW, Carr RL (2019) Adolescent rat social play: Amygdalar proteomic and transcriptomic data. Data in Brief 27: 104589. doi:10.1016/j.dib.2019.104589
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Udall JA, Long E, Ramaraj T, Conover JL, Yuan D, Grover CE, Gong L, Arick-2nd MA, Masonbrink RE, Peterson DG, Wendel JF (2019) The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants. Frontiers in Plant Science 10: 1541. doi:10.3389/fpls.2019.01541
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Bansal M, Nannapaneni R, Kode D, Chang S, Sharma CS, McDaniel C, Kiess A (2019) Rugose Morphotype in Salmonella Typhimurium and Salmonella Heidelberg Induced by Sequential Exposure to Subinhibitory Sodium Hypochlorite Aids in Biofilm Tolerance to Lethal Sodium Hypochlorite on Polystyrene and Stainless Steel Surfaces. Frontiers in Microbiology 10: 2704. doi:10.3389/fmicb.2019.02704
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Ramachandran R, Ozdemir O, Waldbieser G, Lawrence ML (2019) Characterization of a Novel Conjugative Plasmid in Edwardsiella piscicida Strain MS-18-199. Frontiers in Cellular and Infection Microbiology 9: 404. doi:10.3389/fcimb.2019.00404
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Lewis JJ, Geltman RC, Pollak PC, Rondem KE, van Belleghem SM, Hubisz MJ, Munn PR, Zhang L, Benson C, Mazo-Vargas A, Danko CG, Counterman BA, Papa R, Reed RD (2019) Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry. Proceedings of the National Academy of Sciences of the United States of America 116(48): 24174-24183. doi:10.1073/pnas.1907068116
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Parish F, Williams WP, Windham GL, Shan X (2019) Differential Expression of Signaling Pathway Genes Associated With Aflatoxin Reduction Quantitative Trait Loci in Maize (Zea mays L.). Frontiers in Microbiology 10: 2683. doi:10.3389/fmicb.2019.02683
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Park SB, White SB, Steadman CS, Pechan T, Pechanova O, Clemente HJ, Thirumalai RVKG, Willard ST, Ryan PL, Feugang JM (2019) Silver-coated magnetic nanocomposites induce growth inhibition and protein changes in foodborne bacteria. Scientific Reports 9(1): 17499. doi:10.1038/s41598-019-53080-x
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Faria M, Prats E, Gomez-Canela C, Hsu C-Y, Arick-2nd MA, Bedrossiantz J, Orozco M, Garcia-Reyero N, Ziv T, Ben-Lulu S, Admon A, Gomez-Olivan LM, Raldua D (2019) Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish. Scientific Reports 9(1): 16467. doi:10.1038/s41598-019-53154-w
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, Garcia-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, Counterman BA, Papa R, Blaxter M, Reed RD, Dasmahapatra KK, Kronforst M, Joron M, Jiggins CD, McMillan WO, Di Palma F, Blumberg AJ, Wakeley J, Jaffe D, Mallet J (2019) Genomic architecture and introgression shape a butterfly radiation. Science 366(6465): 594-599. doi:10.1126/science.aaw2090
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Cheng W-H (2019) Green Tea: An Ancient Antioxidant Drink for Optimal Health? Journal of Nutrition 149(11): 1877-1879. doi:10.1093/jn/nxz187
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kumar S, Adhikari P, Oakley B, Kim WK (2019) Changes in cecum microbial community in response to total sulfur amino acid (TSAA: DL-methionine) in antibiotic-free and supplemented poultry birds. Poultry Science 98(11): 5809-5819. doi:10.3382/ps/pez380
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Nuthalapati NK, Evans JD, Taylor RL, Branton SL, Nanduri B, Pharr GT (2019) Transcriptomic analysis of early B-cell development in the chicken embryo. Poultry Science 98(11): 5342-5354. doi:10.3382/ps/pez354
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Aboughanem-Sabanadzovic N, Allen TW, Henn A, Lawrence A, Sabanadzovic S (2019) Partial characterization of a divergent isolate of pokeweed mosaic virus from Mississippi. Journal of Plant Pathology 101(4): 1127-1131. doi:10.1007/s42161-019-00277-8
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kordon AO, Kalindamar S, Majors K, Abdelhamed H, Tan W, Karsi A, Pinchuk LM (2019) Effects of Live Attenuated Vaccine and Wild Type Strains of Edwardsiella ictaluri on Phagocytosis, Bacterial Killing, and Survival of Catfish B Cells. Frontiers in Immunology 10: 2383. doi:10.3389/fimmu.2019.02383
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Udall JA, Long E, Hanson C, Yuan D, Ramaraj T, Conover JL, Gong L, Arick MA, Grover CE, Peterson DG, Wendel JF (2019) De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri. G3: Genes, Genomes, Genetics 9(10): 3079-3085. doi:10.1534/g3.119.400392
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang W, Leon-Ricardo BX, van Schooten B, Van Belleghem SM, Counterman BA, McMillan WO, Kronforst MR, Papa R (2019) Comparative Transcriptomics Provides Insights into Reticulate and Adaptive Evolution of a Butterfly Radiation. Genome Biology and Evolution 11(10): 2963-2975. doi:10.1093/gbe/evz202
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Dunn JC, Outlaw DC (2019) Flying into the future: Avian haemosporidians and the advancement of understanding host-parasite systems. Parasitology 146(12): 1487-1489. doi:10.1017/S003118201900057X
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Feugang JM, Rhoads CE, Mustapha PA, Tardif S, Parrish JJ, Willard ST, Ryan PL (2019) Treatment of boar sperm with nanoparticles for improved fertility. Theriogenology 137: 75-81. doi:10.1016/j.theriogenology.2019.05.040
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Elliott KEC, Branton SL, Evans JD, Peebles ED (2019) Occurrence of horizontal transmission in layer chickens after administration of an in ovo strain F Mycoplasma gallisepticum vaccine. Poultry Science 98(10): 4492-4497. doi:10.3382/ps/pez306
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Zhang X, Zhai W, Li S, Suman SP, Chen J, Zhu H, Antonelo DS, Schilling MW (2020) Early postmortem proteome changes in normal and woody broiler breast muscles. Journal of Agricultural and Food Chemistry 68(39): 11000-11010. doi:10.1021/acs.jafc.0c03200
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Liu S, Zhong H, Meng X, Sun T, Li Y, Pinson SRM, Chang SKC, Peng Z (2020) Genome-wide association studies of ionomic and agronomic traits in USDA mini core collection of rice and comparative analyses of different mapping methods. BMC Plant Biology 20(1): 441. doi:10.1186/s12870-020-02603-0
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        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Nanduri B, Gresham CR, Hui WW, Ou M, Bailey RH, Edelmann MJ (2020) An atlas of the catalytically active liver and spleen kinases in chicken identified by chemoproteomics. Journal of Proteomics 225: 103850. doi:10.1016/j.jprot.2020.103850
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        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Rogers W, Campbell YL, Zhang X, Shao W, White S, Phillips TW, Schilling MW (2020) The application of food grade short chain fatty acids to prevent infestation of Tyrophagus putrescentiae on dry cured ham and the effects on sensory properties. Journal of Stored Products Research 88: 101684. doi:10.1016/j.jspr.2020.101684
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        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Tekedar HC, Arick-2nd MA, Hsu C-Y, Thrash A, Blom J, Lawrence ML, Abdelhamed H (2020) Identification of Antimicrobial Resistance Determinants in Aeromonas veronii Strain MS-17-88 Recovered From Channel Catfish (Ictalurus punctatus). Frontiers in Cellular and Infection Microbiology 10: 348. doi:10.3389/fcimb.2020.00348
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        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Shartau RB, Baker DW, Harter TS, Aboagye DL, Allen PJ, Val AL, Crossley DA, Kohl ZF, Hedrick MS, Damsgaard C, Brauner CJ (2020) Preferential intracellular pH regulation is a common trait amongst fishes exposed to high environmental CO2. Journal of Experimental Biology 223(7): jeb208868. doi:10.1242/jeb.208868
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Dhahir N, Feugang J, Witrick K, Park S, AbuGhazaleh A (2020) Impact of ultrasound processing on some milk-borne microorganisms and the components of camel milk. Emirates Journal of Food and Agriculture 32(4): 245-254. doi:10.9755/ejfa.2020.v32.i4.2088
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Moss JB, Gerber GP, Laaser T, Goetz M, Oyog T, Welch ME (2020) Conditional female strategies influence hatching success in a communally nesting iguana. Ecology and Evolution 10(7): 3424-3438. doi:10.1002/ece3.6139
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Ozbek M, Hitit M, Ergun E, Ergun L, Beyaz F, Erhan F, Yildirim N, Kandil B, Ozgenc O, Memili E (2020) Expression profile of Toll-like receptor 4 in rat testis and epididymis throughout postnatal development. Andrologia 52(3): e13518. doi:10.1111/and.13518
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Kutchy NA, Dogan S, Wang X, Topper E, Kaya A, Memili E (2020) Application of proteomics to identify fertility markers in angus bull sperm. HAYATI Journal of Biosciences 27(2): 116-135. doi:10.4308/hjb.27.2.116
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Lindsay KE, Vanover D, Thoresen M, King H, Xiao P, Badial P, Ara�nga M, Park SB, Tiwari PM, Peck HE, Blanchard EL, Feugang JM, Olivier AK, Zurla C, Villinger F, Woolums AR, Santangelo PJ (2020) Aerosol Delivery of Synthetic mRNA to Vaginal Mucosa Leads to Durable Expression of Broadly Neutralizing Antibodies against HIV. Molecular Therapy 28(3): 805-819. doi:10.1016/j.ymthe.2020.01.002
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Fago A, Natarajan C, Pettinati M, Hoffmann FG, Wang T, Weber XRE, Drusin XSI, Issoglio XF, Mart� MA, Estrin D, Storz XJF (2020) Structure and function of crocodilian hemoglobins and allosteric regulation by chloride, ATP, and CO2. American Journal of Physiology - Regulatory Integrative and Comparative Physiology 318(3): R657-R667. doi:10.1152/AJPREGU.00342.2019
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Fatemi SA, Elliott KEC, Bello A, Durojaye OA, Zhang H-J, Peebles ED (2020) The effects of in ovo injected vitamin D3 sources on the eggshell temperature and early posthatch performance of Ross 708 broilers. Poultry Science 99(3): 1357-1362. doi:10.1016/j.psj.2019.10.055
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Gomes FP, Diedrich JK, Saviola AJ, Memili E, Moura AA, Yates-3rd JR (2020) EThcD and 213 nm UVPD for Top-Down Analysis of Bovine Seminal Plasma Proteoforms on Electrophoretic and Chromatographic Time Frames. Analytical Chemistry 92(4): 2979-2987. doi:10.1021/acs.analchem.9b03856
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Kumru S, Tekedar HC, Blom J, Lawrence ML, Karsi A (2020) Genomic diversity in flavobacterial pathogens of aquatic origin. Microbial Pathogenesis 142: 104053. doi:10.1016/j.micpath.2020.104053
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Tekedar HC, Blom J, Kalindamar S, Nho S, Karsi A, Lawrence ML (2020) Comparative genomics of the fish pathogens Edwardsiella ictaluri 93-146 and Edwardsiella piscicida C07-087. Microbial Genomics 6(2): 000322. doi:10.1099/mgen.0.000322
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Yubuki N, Galindo LJ, Reboul G, L�pez-Garc�a P, Brown MW, Pollet N, Moreira D (2020) Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina-Blastocystis Stramenopile Lineage. Molecular Biology and Evolution 37(3): 651-659. doi:10.1093/molbev/msz250
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Murphy-Alford AJ, Prasad M, Slone J, Stein K, Mosby TT (2020) Perspective: Creating the Evidence Base for Nutritional Support in Childhood Cancer in Low- and Middle-Income Countries: Priorities for Body Composition Research. Advances in Nutrition 11(2): 216-223. doi:10.1093/advances/nmz095
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Kalindamar S, Kordon AO, Abdelhamed H, Tan W, Pinchuk LM, Karsi A (2020) Edwardsiella ictaluri evpP is required for colonisation of channel catfish ovary cells and necrosis in anterior kidney macrophages. Cellular Microbiology 22(3): e13135. doi:10.1111/cmi.13135
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: King JG (2020) Developmental and comparative perspectives on mosquito immunity. Developmental and Comparative Immunology 103: 103458. doi:10.1016/j.dci.2019.103458
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Dutilh BE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert ML, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ (2020) Binomial nomenclature for virus species: a consultation. Archives of Virology 165(2): 519-525. doi:10.1007/s00705-019-04477-6
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Menezes ESB, Badial PR, El Debaky H, Husna AU, Ugur MR, Kaya A, Topper E, Bulla C, Grant KE, Bolden-Tiller O, Moura AA, Memili E (2020) Sperm miR-15a and miR-29b are associated with bull fertility. Andrologia 52(1): e13412. doi:10.1111/and.13412
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Sharideh H, Zhandi M, Zeinoaldini S, Zaghari M, Sadeghi M, Akhlaghi A, Peebles ED (2020) Beneficial effects of dietary coenzyme Q10 on the productive and reproductive variables of broiler breeder hens. Animal Reproduction Science 213: 106256. doi:10.1016/j.anireprosci.2019.106256
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Bednarova A, Kropf M, Krishnan N (2020) The surfactant polyethoxylated tallowamine (POEA) reduces lifespan and inhibits fecundity in Drosophila melanogaster- In vivo and in vitro study. Ecotoxicology and Environmental Safety 188: 109883. doi:10.1016/j.ecoenv.2019.109883
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Raldua D, Casado M, Prats E, Faria M, Puig-Castellvi F, Perez Y, Alfonso I, Hsu C-Y, Arick-2nd MA, Garcia-Reyero N, Ziv T, Ben-Lulu S, Admon A, Pina B (2020) Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain. Scientific Reports 10(1): 312. doi:10.1038/s41598-019-57142-y
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Schumaker BC, Stallworth S, De Castro E, Fuller MG, Shrestha S, Tseng T-M (2020) Repeatable Stair-step Assay to Access the Allelopathic Potential of Weedy Rice (Oryza sativa ssp.). Journal of Visualized Experiments 155: e60764. doi:10.3791/60764
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Chaudhuri A, Johnson R, Rakshit K, Bednarova A, Lackey K, Chakraborty SS, Krishnan N, Chaudhuri A (2020) Exposure to Spectracide causes behavioral deficits in Drosophila melanogaster: Insights from locomotor analysis and molecular modeling. Chemosphere 248: 126037. doi:10.1016/j.chemosphere.2020.126037
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Storz JF, Natarajan C, Grouleff MK, Vandewege M, Hoffmann FG, You X, Venkatesh B, Fago A (2020) Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris). Journal of Experimental Biology 223(2): jeb217307. doi:10.1242/jeb.217307
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Owen MPT, Northrop EJ, Rich JJJ, Perry GA, Messman RD, Dinh TTN, McCarty KJ, Yang J, Wan D, Lemley CO (2020) Oxylipin concentrations in bovine corpora lutea during maternal recognition of pregnancy. Theriogenology 142: 384-389. doi:10.1016/j.theriogenology.2019.10.003
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Ugur MR, Dinh T, Hitit M, Kaya A, Topper E, Didion B, Memili E (2020) Amino Acids of Seminal Plasma Associated With Freezability of Bull Sperm. Frontiers in Cell and Developmental Biology 7: 347. doi:10.3389/fcell.2019.00347
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Scott MA, Woolums AR, Swiderski CE, Perkins AD, Nanduri B, Smith DR, Karisch BB, Epperson WB, Blanton-Jr JR (2020) Whole blood transcriptomic analysis of beef cattle at arrival identifies potential predictive molecules and mechanisms that indicate animals that naturally resist bovine respiratory disease. PLoS ONE 15(1): e0227507. doi:10.1371/journal.pone.0227507
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Vines PL, Hoffmann FG, Meyer F, Allen TW, Luo J, Zhang N, Tomaso-Peterson M (2020) Magnaporthiopsis cynodontis, a novel turfgrass pathogen with widespread distribution in the United States. Mycologia 112(1): 52-63. doi:10.1080/00275514.2019.1676614
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Al-Mohanna T, Bokros NT, Ahsan N, Popescu GV, Popescu SC (2020) Methods for Optimization of Protein Extraction and Proteogenomic Mapping in Sweet Potato. Methods in Molecular Biology 2139: 309-324. doi:10.1007/978-1-0716-0528-8_23
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Burki F, Roger AJ, Brown MW, Simpson AGB (2020) The New Tree of Eukaryotes. Trends in Ecology and Evolution 35(1): 43-55. doi:10.1016/j.tree.2019.08.008
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Rycroft TE, Foran CM, Thrash A, Cegan JC, Zollinger R, Linkov I, Perkins EJ, Garcia-Reyero N (2020) AOPERA: A proposed methodology and inventory of effective tools to link chemicals to adverse outcome pathways. ALTEX 37(1): 64-74. doi:10.14573/altex.1906201
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Rodriguez-Caro L, Fenner J, Benson C, Van Belleghem SM, Counterman BA (2020) Genome Assembly of the Dogface Butterfly Zerene cesonia. Genome Biology and Evolution 12(1): 3580-3585. doi:10.1093/gbe/evz254
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Tomasechova J, Hancinsky R, Predajna L, Kraic J, Mihalik D, Soltys K, Vavrova S, Bohmer M, Sabanadzovic S, Glasa M (2020) High-throughput sequencing reveals bell pepper endornavirus infection in pepper (Capsicum annum) in Slovakia and enables its further molecular characterization. Plants 9(1): 41. doi:10.3390/plants9010041
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Thrash A, Tang JD, Deornellis M, Peterson DG, Warburton ML (2020) PAST: The pathway association studies tool to infer biological meaning from GWAS datasets. Plants 9(1): 58. doi:10.3390/plants9010058
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Lee P, Popescu GV, Kim S (2020) A Nonoscillatory Second-Order Time-Stepping Procedure for Reaction-Diffusion Equations. Complexity 2020: 5163704. doi:10.1155/2020/5163704
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Zhao D, Kogut MH, Genovese KJ, Hsu C-Y, Lee JT, Farnell YZ (2020) Altered expression of lactate dehydrogenase and monocarboxylate transporter involved in lactate metabolism in broiler wooden breast. Poultry Science 99(1): 11-20. doi:10.3382/ps/pez572
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Sokale AO, Williams CJ, Triplett MD, Hoerr FJ, Peebles ED (2020) Effects of stage of broiler embryo development on coccidiosis vaccine injection accuracy, and subsequent oocyst localization and hatchling quality. Poultry Science 99(1): 189-195. doi:10.3382/ps/pez592
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Ishak GM, Dutra GA, Gastal GDA, Elcombe ME, Gastal MO, Park SB, Feugang JM, Gastal EL (2020) Deficiency in proliferative, angiogenic, and LH receptors in the follicle wall: implications of season toward the anovulatory condition. Domestic Animal Endocrinology 70: 106382. doi:10.1016/j.domaniend.2019.07.010
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Franca LX, Dodds DM, Butts TR, Kruger GR, Reynolds DB, Mills JA, Bond JA, Catchot AL, Peterson DG (2020) Droplet size impact on lactofen and acifluorfen efficacy for Palmer amaranth (Amaranthus palmeri) control. Weed Technology 34(3): 416-423. doi:10.1017/wet.2019.133
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Moss JB, Gerber GP, Goetz M, Haakonsson JE, Harvey JC, Laaser T, Welch ME (2020) Contrasting Patterns of Movement across Life Stages in an Insular Iguana Population. Journal of Herpetology 54(1): 67-77. doi:10.1670/18-113
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Dinken CP, Keretz KR, Schramm-Jr HL, Petrie-Hanson L, Schilling MW, Allen PJ (2020) Changes in Physiology and Stress Responses of Pellet-Reared Largemouth Bass Fed Live-Forage Diets. North American Journal of Aquaculture 82(1): 3-23. doi:10.1002/naaq.10120
        • Type: Journal Articles Status: Published Year Published: 2020 Citation: Monghit-Camarin MA, Cruz-Lacierda ER, Pakingking-Jr RV, Cuvin-Aralar ML, Traifalgar RF, Anasco NC, Austin FW, Lawrence ML (2020) Bacterial microbiota of hatchery-reared freshwater prawn macrobrachium rosenbergii (De man, 1879). Asian Fisheries Science 33(3): 241-248. doi:10.33997/j.afs.2020.33.3.005
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Alugubelly N, Mohammad AN, Edelmann MJ, Nanduri B, Sayed M, Park JW, Carr RL (2019) Proteomic and transcriptional profiling of rat amygdala following social play. Behavioural Brain Research 376: 112210. doi:10.1016/j.bbr.2019.112210
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Moss JB, Gerber GP, Welch ME (2019) Heterozygosity-fitness correlations reveal inbreeding depression in neonatal body size in a critically endangered rock iguana. Journal of Heredity 110(7): 818-829. doi:10.1093/jhered/esz060
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Paes VM, Liao SF, Figueiredo JR, Willard ST, Ryan PL, Feugang JM (2019) Proteome changes of porcine follicular fluid during follicle development. Journal of Animal Science and Biotechnology 10(1): 94. doi:10.1186/s40104-019-0400-3
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wijewardana C, Alsajri FA, Irby JT, Krutz LJ, Golden BR, Henry WB, Reddy KR (2019) Water deficit effects on soybean root morphology and early-season vigor. Agronomy 9(12): 836. doi:10.3390/agronomy9120836
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Concha C, Wallbank RWR, Hanly JJ, Fenner J, Livraghi L, Rivera ES, Paulo DF, Arias C, Vargas M, Sanjeev M, Morrison C, Tian D, Aguirre P, Ferrara S, Foley J, Pardo-Diaz C, Salazar C, Linares M, Massardo D, Counterman BA, Scott MJ, Jiggins CD, Papa R, Martin A, McMillan WO (2019) Interplay between Developmental Flexibility and Determinism in the Evolution of Mimetic Heliconius Wing Patterns. Current Biology 29(23): 3996-4009. doi:10.1016/j.cub.2019.10.010
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wan H, Gao J, Yang H, Yang S, Harvey R, Chen Y-Q, Zheng N-Y, Chang J, Carney PJ, Li X, Plant E, Jiang L, Couzens L, Wang C, Strohmeier S, Wu WW, Shen R-F, Krammer F, Cipollo JF, Wilson PC, Stevens J, Wan X-F, Eichelberger MC, Ye Z (2019) The neuraminidase of A(H3N2) influenza viruses circulating since 2016 is antigenically distinct from the A/Hong Kong/4801/2014 vaccine strain. Nature Microbiology 4(12): 2216-2225. doi:10.1038/s41564-019-0522-6
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang X, Kim Y, Elsayed I, Taylor M, Eberhardt TL, Hassan EB, Shmulsky R (2019) Rigid polyurethane foams containing lignin oxyalkylated with ethylene carbonate and polyethylene glycol. Industrial Crops and Products 141: 111797. doi:10.1016/j.indcrop.2019.111797
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Shao Z-Q, Zhang X, Fan H-H, Wang X-S, Wu H-M, Zhang L, Cheng W-H, Zhu J-H (2019) Selenoprotein T Promotes Proliferation and G1-to-S Transition in SK-N-SH Cells: Implications in Parkinson's Disease. Journal of Nutrition 149(12): 2110-2119. doi:10.1093/jn/nxz199
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Adhikari P, Nagesh PKB, Alharthi F, Chauhan SC, Jaggi M, Yallapu MM, Pradhan P (2019) Optical detection of the structural properties of tumor tissue generated by xenografting of drug-sensitive and drug-resistant cancer cells using partial wave spectroscopy (PWS). Biomedical Optics Express 10(12): 6422-6431. doi:10.1364/BOE.10.006422


        Progress 03/06/19 to 09/30/19

        Outputs
        Target Audience:The target audience for our research is diverse and includes plant and animal breeders, evolutionary biologists, plant and animal pathologists, pest/pathogen management personnel, farmers and ranchers, medical researchers and practicing doctors, computational biologists and bioinformaticians, ecologists, toxicologists, food scientists, entomologists and nematologists, and veterinary scientists. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? The IGBB continued its active role in the University & Industry Consortium (UIC). The UIC is a group working to increase partnerships between agricultural, food, and biotechnology companies and land-grant institutions. The UIC began more than 20 years ago with Mississippi State serving as a founding member. The UIC provides opportunities for students and faculty to interact and develop research and educational collaborations with leaders in industry and academia. The IGBB supported participation of research faculty, research associates, and students in a number of national and international scientific meetings. The IGBB trained three graduate students and four undergraduate student workers in computational biology and molecular biology techniques. Tony Arick received a promotion from Research Associate III to Computer Specialist with a concomitant increase in salary. In addition, Dr. Adam Thrash was promoted from a Research Associate I to a Research Associate II. Dr. Zenaida Magbanua was hired as a Senior Research Associate. Dr. Magbanua was hired to help Dr. Chuan-Yu Hsu, the IGBB's Genomics Research Lead. How have the results been disseminated to communities of interest?Results have been disseminated to the scientific community through peer-reviewed publications, book chapters, scientific meetings/presentations, faculty exchange programs, and the IGBB website (www.igbb.msstate.edu). In addition, DNA sequence and gene expression data were disseminated through AgBase (www.agbase.msstate.edu), CrocGenomes (www.crocgenomes.org), CottonGen (www.cottongen.org), VetBioBase (http://vetbiobase.igbb.msstate.edu), and the National Center for Biotechnology Information (NCBI; www.ncbi.nlm.nih.gov). What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period we plan to focus on expanding the IGBB's computational biology expertise and strengthening our partnerships with the USDA-ARS, the U.S. Forest Service, the U.S. Army Corps of Engineers (USACE), and the U.S. Agency for International Development (USAID). Additionally, we look to submit an equipment proposal in January 2020 to the NSF Major Research Instrumentation Program requesting funds to purchase a new ThermoFisher Orbitrap Eclipse mass spectrometer for the IGBB Service Center.

        Impacts
        What was accomplished under these goals? Below is a list of our major project goals (1-5). Each goal is followed by accomplishments (each delineated by a bullet) made over the course of the last year that advanced that goal. (1) Conducting scientific research that meets the needs of society and further enhances the unique strengths of MS State. The IGBB employed 20 people (FTE) during the period in question. In doing so, the IGBB helped strengthen MS State and the local/state economies. The IGBB's total expenditures were $1.9 million. IGBB scientists published seven technique/tool development papers in FY19 including anew technique for studying nutrient-gene interactions in animals, achicken gene expression database, insulated panels with lignin-incorporated rigid polyurethane foam cores, an algorithm for improving reproducibility when modeling parallel computing systems, anovel visualization tool for exploring biodiversity in metagenomes, a new technique for isolating heavy metals from contaminated wood, and an efficient method for gene deletion in Listeria monocytogenes. The IGBB received a Quick Start award from the USAID Fish Innovation Laboratory. Through this award we sequenced, assembled, and annotated the genome of rohu carp (Labeo rohita), a aquacultural species of particular interest in Asia and Africa. In addition, we performed genotyping-by-sequencing (GBS) analysis on 100 randomly-selected rohu. This work was done in collaboration with Bangladesh Agricultural University. The IGBB received another one-yearcontract with the U.S. Army Corps of Engineers (USACE) Engineering Research and Development Center (ERDC) in Vicksburg, MS. Through this contract the IGBB conducts sequencing and computational biology research on aquatic toxicology in collaboration with the ERDC's ecology team. (2) Attracting and retaining outstanding faculty and students at MS State. The IGBB employs Drs. Tibor Pechan, Nina Aboughanem, George Popescu, and Shankar Shanmugamas research faculty. The IGBB employs Drs. Chuan-Yu Hsu, Olga Pechanova, Ramey "Cal" Youngblood, Zenaida Magbanua, Adam Thrash, and Mr. Tony Arick as full-time research associates. The IGBB invested in the research programs of several MSU departmental faculty including Drs. Diana Outlaw (Biological Sciences, malaria), Erdogan Memili and Jean Feugang (Animal and Dairy Sciences - livestock fertility),Peter Allen and Federico Hoffmann (Aquaculture and Biochemistry, respectively - alligator gar genomics), and Shien Lu (Biochemistry - antifungal bacteria). The IGBB has provided opportunities for three graduate students to earn their Ph.D. degrees. These students are/were funded through extramural awards to the IGBB. The IGBB has continued to invest in purchase and maintenance of state-of-the-art equipment as a means of creating research opportunities and attracting/retaining faculty. In FY19 the IGBB purchased the service contracts for their LTQ Orbitrap Velos mass spectrometer and an Illumina MiSeq DNA sequencer. (3) Offering researchers at MS State and elsewhere the opportunity to collaborate with the IGBB's genomics, proteomics, and computational biology experts. Records showed that the IGBB conducted 41 separately invoiced service projects. Service Center records show that service jobs were submitted by 15 different PIs representing six different departments. Additionally, work was done for one researcher at the University of Southern Mississippi, a scientist at the University of Mississippi Medical Center, one U.S. Forest Service laboratory, oneUSDA-ARS lab, and the toxicology group of the U.S. Army Corps of Engineers. Service Center and computer usage records indicate that the institute conducted collaborative research with roughly 40 different MSU PIs. (4) Helping principal investigators leverage the experience and expertise of the IGBB to make their research programs more productive, increase the number and scientific impact of their publications, and enhance their ability to procure extramural funding. Several new local/state/federal grants (net value = $2,490,970) were obtained by IGBB scientists. 139 peer-reviewed manuscripts were published by IGBB-affiliated scientists during the fiscal year. Twenty-seven of these have SCOPUS 2-year citation indices > 4. (5) Supporting educational activities that enhance the abilities of students and faculty to succeed in the multidisciplinary fields of computational biology, genomics, and biotechnology. See Opportunities for Training and Professional Development below.

        Publications

        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Menezes EB, Velho ALC, Santos F, Dinh T, Kaya A, Topper E, Moura AA, Memili E (2019) Uncovering sperm metabolome to discover biomarkers for bull fertility. BMC Genomics 20(1): 714.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wijewardana C, Reddy KR, Jason Krutz L, Gao W, Bellaloui N (2019) Drought stress has transgenerational effects on soybean seed germination and seedling vigor. PLoS ONE 14(9): e0214977.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ariunbold GO, Semon B, Nagpal S, Adhikari P (2019) Coherent Anti-Stokes-Stokes Raman Cross-Correlation Spectroscopy: Asymmetric Frequency Shifts in Hydrogen-Bonded Pyridine-Water Complexes. Applied Spectroscopy 73(9): 1099-1106.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang H, Elliott KEC, Durojaye OA, Fatemi SA, Schilling MW, Peebles ED (2019) Effects of in ovo injection of L-ascorbic acid on growth performance, carcass composition, plasma antioxidant capacity, and meat quality in broiler chickens. Poultry Science 98(9): 3617-3625.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Krishnan K, Campbell YL, To KV, Lima G, Byron MD, Zhang X, Hendrix JD, Shao W, Cord CL, Crist CA, Phillips TW, Schilling MW (2019) Effects of temperature, relative humidity, and protective netting on Tyrophagus putrescentiae (schrank) (sarcoptiformes: Acaridae) infestation, fungal growth, and product quality of cave-aged Cheddar cheese. Journal of Stored Products Research 83: 44-53.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Calisher CH, Briese T, Brister JR, Charrel RN, Durrwald R, Ebihara H, Fulhorst CF, Gao GF, Groschup MH, Haddow AD, Hyndman TH, Junglen S, Klempa B, Klingstrom J, Kropinski AM, Krupovic M, Labeaud AD, Maes P, Nowotny N, Nunes MRT, Payne SL, Radoshitzky SR, Rubbenstroth D, Sabanadzovic S, Sasaya T, Stenglein MD, Varsani A, Wahl V, Weaver SC, Zerbini FM, Vasilakis N, Kuhn JH (2019) Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species. Systematic Biology 68(5): 828-839.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Walker PJ, Siddell SG, Lefkowitz EJ, Mushegian AR, Dempsey DM, Dutilh BE, Harrach B, Harrison RL, Hendrickson RC, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Simmonds P, Varsani A, Zerbini FM, Davison AJ (2019) Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019). Archives of Virology 164(9): 2417-2429.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wang X, Farnell YZ, Kiess AS, Peebles ED, Wamsley KGS, Zhai W (2019) Effects of Bacillus subtilis and coccidial vaccination on cecal microbial diversity and composition of Eimeria-challenged male broilers. Poultry Science 98(9): 3839-3849.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Lawrence ML, Ramachandran R, Karsi A (2019) Validation of Predicted Virulence Factors in Listeria monocytogenes Identified Using Comparative Genomics. Toxins 11(9): 508.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ugur MR, Saber Abdelrahman A, Evans HC, Gilmore AA, Hitit M, Arifiantini RI, Purwantara B, Kaya A, Memili E (2019) Advances in Cryopreservation of Bull Sperm. Frontiers in Veterinary Science 6: 268.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Hasan MS, Feugang JM, Liao SF (2019) A Nutrigenomics Approach Using RNA Sequencing Technology to Study Nutrient-Gene Interactions in Agricultural Animals. Current Developments in Nutrition 3(8): nzz082.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Blakely JA, Butler JR, Priddy LB, McCabe EM, Avendano JN, Elder SH, Wills R (2019) Ex vivo biomechanical comparison of 2.7 mm string-of-pearl plate versus screw/wire/Polymethylmethacrylate composite fixation and 2.7 mm veterinary acetabular plate for repair of simulated canine acetabular fractures. BMC Veterinary Research 15(1): 287.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Stewart HA, Aboagye DL, Ramee SW, Allen PJ (2019) Effects of acute thermal stress on acid-base regulation, haematology, ion-osmoregulation and aerobic metabolism in Channel Catfish (Ictalurus punctatus). Aquaculture Research 50(8): 2133-2141.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ray DA, Grimshaw JR, Halsey MK, Korstian JM, Osmanski AB, Sullivan KAM, Wolf KA, Reddy H, Foley N, Stevens RD, Knisbacher BA, Levy O, Counterman B, Edelman NB, Mallet J (2019) Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths. Genome biology and evolution 11(8): 2162-2177.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ghadyeh Zarrinabadi I, Razmjoo J, Abdali Mashhadi A, Karimmojeni H, Tseng T-M (2019) Irrigation effect on yield and desirable metabolites of pot marigold (Calendula officinalis L.) genotypes. Horticulture Environment and Biotechnology 60(4): 467-478.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Khakzad R, Alebrahim MT, Tobeh A, Oveisi M, Valiolahpor R, Tseng TM (2019) Effects of different management practices on Portulaca oleracea emergence in soyabean. Weed Research 59(4): 279-287.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Bararpour T, Hale RR, Kaur G, Singh B, Tseng T-MP, Wilkerson TH, Willett CD (2019) Weed management programs in grain Sorghum (Sorghum bicolor). Agriculture (Switzerland) 9(8): 182.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Velho A, Wang H, Koenig L, Grant KE, Menezes ES, Kaya A, Moura A, Memili E (2019) Expression dynamics of Integrin Subunit Beta 5 in bovine gametes and embryos imply functions in male fertility and early embryonic development. Andrologia 51(7): e13305.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Goodarzi P, Akhlaghi A, Zamiri MJ, Shirazi MRJ, Akhlaghi AA, Habibi M, Daryabari H, Saemi F, Peebles ED (2019) Sperm characteristics of Chukar partridge (Alectoris chukar) breeders as affected by the addition of calcitriol to the semen extender. Poultry Science 98(8): 3292-3297.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ayoola MB, Shack LA, Nakamya MF, Thornton JA, Swiatlo E, Nanduri B (2019) Polyamine synthesis effects capsule expression by reduction of precursors in streptococcus pneumoniae. Frontiers in Microbiology 10(AUG): 1996.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Tekedar HC, Kumru S, Blom J, Perkins AD, Griffin MJ, Abdelhamed H, Karsi A, Lawrence ML (2019) Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally. PLoS ONE 14(8): e0221018.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Valverde RA, Khalifa ME, Okada R, Fukuhara T, Sabanadzovic S (2019) ICTV virus taxonomy profile: Endornaviridae. Journal of General Virology 100(8): 1024-1025.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhao Z, Wang C, Zhang L, Zhao Y, Duan C, Zhang X, Gao L, Li S (2019) Lactobacillus plantarum NA136 improves the non-alcoholic fatty liver disease by modulating the AMPK/Nrf2 pathway. Applied Microbiology and Biotechnology 103(14): 5843-5850.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Al-Mohanna T, Ahsan N, Bokros NT, Dimlioglu G, Reddy KR, Shankle M, Popescu GV, Popescu SC (2019) Proteomics and Proteogenomics Analysis of Sweetpotato (Ipomoea batatas) Leaf and Root. Journal of Proteome Research 18(7): 2719-2734.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Miller AH, C Jackson A, van den Burg MP, Knapp CR, Welch ME, Reynolds RG (2019) The complete mitochondrial genome of the critically endangered Lesser Antillean iguana (Iguana delicatissima; Squamata: Iguanidae). Mitochondrial DNA Part B: Resources 4(2): 2479-2481.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Fenner J, Rodriguez-Caro L, Counterman B (2019) Plasticity and divergence in ultraviolet reflecting structures on Dogface butterfly wings. Arthropod Structure and Development 51: 14-22.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Aboughanem-Sabanadzovic N, Allen TW, Wilkerson TH, Conner KN, Sikora EJ, Nichols RL, Sabanadzovic S (2019) First report of cotton leafroll dwarf virus in upland cotton (Gossypium hirsutum) in Mississippi. Plant Disease 103(7): 1798.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Chesser BM, Green CC, Allen PJ (2019) Egg Production of Gulf Killifish Is Dependent on Broodstock Rearing Density but Not Spawning Substrate Surface Area. North American Journal of Aquaculture 81(3): 201-210.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Guy EL, Mischke CC, Colvin ME, Allen PJ (2019) Zooplankton Selectivity by Black Buffalo in Fertilized Ponds. North American Journal of Aquaculture 81(3): 215-221.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Castaneda CD, McDaniel CD, Abdelhamed H, Karsi A, Kiess AS (2019) Evaluating bacterial colonization of a developing broiler embryo after in ovo injection with a bioluminescent bacteria. Poultry Science 98(7): 2997-3006.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Saddam AC, Foster HM, Zhang M, Mosby TT (2019) Effect of sex and race on body mass index and percent body fat in young adults. Nutrition 63-64: 9-13.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Dhowlaghar N, Shen Q, Nannapaneni R, Schilling W, Samala A (2019) Survival of acid stress adapted cells of Listeria monocytogenes serotypes 1/2a and 4b in commonly used disinfectants in broth and water models. LWT - Food Science and Technology 109: 201-206.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Fiore-Donno AM, Tice AK, Brown MW (2019) A Non-Flagellated Member of the Myxogastria and Expansion of the Echinosteliida. Journal of Eukaryotic Microbiology 66(4): 538-544.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Opazo JC, Kuraku S, Zavala K, Toloza-Villalobos J, Hoffmann FG (2019) Evolution of nodal and nodal-related genes and the putative composition of the heterodimers that trigger the nodal pathway in vertebrates. Evolution and Development 21(4): 205-217.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Carreras-De Leon R, Pasachnik SA, Gerber GP, Brooks CP, Rupp E, Welch ME (2019) Genetic structure at three spatial scales is consistent with limited philopatry in Ricord's Rock Iguanas (Cyclura ricordii). Ecology and Evolution 9(14): 8331-8350.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abudurexiti A, Adkins S, Alioto D, Alkhovsky SV, Avsic-Zupanc T, Ballinger MJ, Bente DA, Beer M, Bergeron E, Blair CD, Briese T, Buchmeier MJ, Burt FJ, Calisher CH, Chang C, Charrel RN, Choi IR, Clegg JCS, de la Torre JC, de Lamballerie X, Deng F, Di Serio F, Digiaro M, Drebot MA, Du�n X, Ebihara H, Elbeaino T, Ergunay K, Fulhorst CF, Garrison AR, Gao GF, Gonzalez J-PJ, Groschup MH, Gunther S, Haenni A-L, Hall RA, Hepojoki J, Hewson R, Hu Z, Hughes HR, Jonson MG, Junglen S, Klempa B, Klingstrom J, Kou C, Laenen L, Lambert AJ, Langevin SA, Liu D, Lukashevich IS, Luo T, Lu C, Maes P, de Souza WM, Marklewitz M, Martelli GP, Matsuno K, Mielke-Ehret N, Minutolo M, Mirazimi A, Moming A, Muhlbach H-P, Naidu R, Navarro B, Nunes MRT, Palacios G, Papa A, Pauvolid-Correa A, Paweska JT, Qiao J, Radoshitzky SR, Resende RO, Romanowski V, Sall AA, Salvato MS, Sasaya T, Shen S, Shi X, Shirako Y, Simmonds P, Sironi M, Song J-W, Spengler JR, Stenglein MD, Su Z, Sun S, Tang S, Turina M, Wang B, Wang C, Wang H, Wang J, Wei T, Whitfield AE, Zerbini FM, Zhang J, Zhang L, Zhang Y, Zhang Y-Z, Zhang Y, Zhou X, Zhu L, Kuhn JH (2019) Taxonomy of the order Bunyavirales: update 2019. Archives of Virology 164(7): 1949-1965.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Banes M, Karsi A, Lawrence ML (2019) Recombinant ATPase of virulent aeromonas hydrophila protects channel catfish against motile aeromonassepticemia. Frontiers in Immunology 10(JULY): 1641.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Portugal JS, Allerdice M, Moraru GM, King J, Paddock CD, Becker T, Smith TC, Goddard J (2019) Molecular Phylogeny of Dermacentor parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range. Journal of Medical Entomology 56(4): 979-983.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Outlaw DC, Walstrom VW, Bodden HN, Hsu CY, Arick-2nd MA, Peterson DG (2019) Molecular evolution in immune genes across the avian tree of life. Parasitology Open 5: e3.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Mosby TT (2019) The Impact of Fellowship in Dietetics on Clinical Practice. Journal of Cancer Education 34(3): 498-504.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Guan M, Hall JS, Zhang X, Dusek RJ, Olivier AK, Liu L, Li L, Krauss S, Danner A, Li T, Rutvisuttinunt W, Lin X, Hallgrimsson GT, Ragnarsdottir SB, Vignisson SR, TeSlaa J, Nashold SW, Jarman R, Wan X-F (2019) Aerosol transmission of gull-origin Iceland subtype H10N7 influenza A virus in ferrets. Journal of Virology 93(13): e00282-19.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: McCarthy FM, Pendarvis K, Cooksey AM, Gresham CR, Bomhoff M, Davey S, Lyons E, Sonstegard TS, Bridges SM, Burgess SC (2019) Chickspress: a resource for chicken gene expression. Database: The Journal of Biological Databases and Curation 2019: baz058.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Singh B, Singh SK, Matcha SK, Kakani VG, Wijewardana C, Chastain D, Gao W, Reddy KR (2019) Parental environmental effects on seed quality and germination response to temperature of andropogon gerardii. Agronomy 9(6): 304.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Hatcher J, Cavinder C, Heaton CP, Figueiredo L, Holtcamp A, Dinh T (2019) Psychological and physical benefits of interactions with horses. Journal of Extension 57(3): 3RIB6.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Deng L, Spencer BL, Holmes JA, Mu R, Rego S, Weston TA, Hu Y, Sanches GF, Yoon S, Park N, Nagao PE, Jenkinson HF, Thornton JA, Seo KS, Nobbs AH, Doran KS (2019) The group B streptococcal surface antigen I/II protein, BspC, interacts with host vimentin to promote adherence to brain endothelium and inflammation during the pathogenesis of meningitis. PLoS Pathogens 15(6): e1007848.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang X, Kim Y, Eberhardt TL, Shmulsky R (2019) Lab-scale structural insulated panels with lignin-incorporated rigid polyurethane foams as core. Industrial Crops and Products 132: 292-300.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang X, Liu R-P, Cheng W-H, Zhu J-H (2019) Prioritized brain selenium retention and selenoprotein expression: Nutritional insights into Parkinson's disease. Mechanisms of Ageing and Development 180: 89-96.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Carlisle LD, Memili E, Linford RL, Slater KA, Nicodemus MC (2019) Relationship Between Gait Mechanics and the Speed of the Trot in the Weimaraner Dog Breed. Topics in Companion Animal Medicine 35: 26-30.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wen F, Wan X-F (2019) Influenza Neuraminidase: Underrated Role in Receptor Binding. Trends in Microbiology 27(6): 477-479.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ugur MR, Kutchy NA, Menezes EB, Ul-Husna A, Haynes BP, Uzun A, Kaya A, Topper E, Moura AA, Memili E (2019) Retained acetylated histone four in bull sperm associated with fertility. Frontiers in Veterinary Science 6(JUN): 223.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Allred S, Shao W, Schilling MW, Petrie-Hanson L, Allen PJ (2019) An assessment of red fillet prevalence in the catfish industry. Aquaculture 507: 203-210.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Anapalli SS, Fisher DK, Reddy KN, Krutz JL, Pinnamaneni SR, Sui R (2019) Quantifying water and CO2 fluxes and water use efficiencies across irrigated C3 and C4 crops in a humid climate. Science of the Total Environment 663: 338-350.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Shrestha S, Sharma G, Burgos NR, Tseng T-M (2019) Response of weedy rice (Oryza spp.) germplasm from Arkansas to glyphosate, glufosinate, and flumioxazin. Weed Science 67(3): 303-310.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ferjak EN, Cavinder CA, Sukumaran AT, Burnett DD, Lemley CO, Dinh TTN (2019) Fatty acid composition of mesenteric, cardiac, abdominal, intermuscular, and subcutaneous adipose tissues from horses of three body condition scores. Livestock Science 223: 116-123.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Bodden HN, Outlaw DC (2019) Diversity of Haemosporidian Parasites in Mississippi Songbirds. Southeastern Naturalist 18(2): 314-320.
        • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Sanders WS, Srivastava S, Banicescu I (2019) A container-based framework to facilitate reproducibility in employing stochastic process algebra for modeling parallel computing systems. Proceedings - 2019 IEEE 33rd International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2019 Article number 8778220: 373-381.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wilson AE, Sparks DL, Knott KK, Willard S, Brown A, Connor T, Zhang Z (2019) Field air analysis of volatile compounds from free-ranging giant pandas. Ursus 29(2): 75-81.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wang X, Peebles ED, Kiess AS, Wamsley KGS, Zhai W (2019) Effects of coccidial vaccination and dietary antimicrobial alternatives on the growth performance, internal organ development, and intestinal morphology of Eimeria-challenged male broilers. Poultry Science 98(5): 2054-2065.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wijewardana C, Reddy KR, Bellaloui N (2019) Soybean seed physiology, quality, and chemical composition under soil moisture stress. Food Chemistry 278: 92-100.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Lone AA, Jumaa SH, Wijewardana C, Taduri S, Redona ED, Raja Reddy K (2019) Drought stress tolerance screening of elite American breeding rice genotypes using low-cost pre-fabricated mini-hoop modules. Agronomy 9(4): 199.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Ozdemir O, Ibrahim I, Lawrence M, Karsi A (2019) Antibacterial activities of trans-cinnamaldehyde, caprylic acid, and β-resorcylic acid against catfish pathogens. Aquaculture 504: 334-344.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ma L, Qu S, Lin J, Jia J, Baird SM, Jiang N, Li H, Hou L, Lu S-E (2019) The complete genome of the antifungal bacterium Pseudomonas sp. strain MS82. Journal of Plant Diseases and Protection 126(2): 153-160.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Omer AR, Henderson JE, Falconer L, Kroger R, Allen PJ (2019) Economic costs of using tailwater recovery systems for maintaining water quality and irrigation. Journal of Environmental Management 235: 186-193.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Lawrence ML, Waldbieser G (2019) Complete genome sequence data of multidrug-resistant Aeromonas veronii strain MS-18-37. Data in Brief 23: 103689.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: McConnell EW, Berg P, Westlake TJ, Wilson KM, Popescu GV, Hicks LM, Popescu SC (2019) Proteome-wide analysis of cysteine reactivity during effector-triggered immunity. Plant Physiology 179(4): 1248-1264.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Tseng T-M, Shrestha S, McCurdy JD, Wilson E, Sharma G (2019) Target-site mutation and fitness cost of acetolactate synthase inhibitorresistant annual bluegrass. HortScience 54(4): 701-705.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Cai L, Jeremic D, Lim H, Kim Y (2019) B-Cyclodextrins as sustained-release carriers for natural wood preservatives. Industrial Crops and Products 130: 42-48.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: El Debaky HA, Kutchy NA, Ul-Husna A, Indriastuti R, Akhter S, Purwantara B, Memili E (2019) REVIEW: Potential of water buffalo in world agriculture: Challenges and opportunities. Applied Animal Science 35(2): 255-268.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang X, Outlaw C, Olivier AK, Woolums A, Epperson W, Wan X-F (2019) Pathogenesis of co-infections of influenza D virus and Mannheimia haemolytica in cattle. Veterinary Microbiology 231: 246-253.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Van Hemert C, Spivey TJ, Uher-Koch BD, Atwood TC, Sinnett DR, Meixell BW, Hupp JW, Jiang K, Adams LG, Gustine DD, Ramey AM, Wan X-F (2019) Survey of arctic alaskan wildlife for influenza a antibodies: Limited evidence for exposure of mammals. Journal of Wildlife Diseases 55(2): 387-398.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Lahr DJG, Kosakyan A, Lara E, Mitchell EAD, Morais L, Porfirio-Sousa AL, Ribeiro GM, Tice AK, Panek T, Kang S, Brown MW (2019) Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight Diversity of Microbial Eukaryotes in the Neoproterozoic. Current Biology 29(6): 991-1001.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Zhang L, Zhu J-H, Zhang X, Cheng W-H (2019) The Thioredoxin-Like Family of Selenoproteins: Implications in Aging and Age-Related Degeneration. Biological Trace Element Research 188(1): 189-195.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Bokros N, Popescu SC, Popescu GV (2019) Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions. BMC Bioinformatics 20: 99.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Berg P, McConnell EW, Hicks LM, Popescu SC, Popescu GV (2019) Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics. BMC Bioinformatics 20: 102.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wren JD, Doerkson RJ, Toby IT, Nanduri B, Homayouni R, Manda P, Thakkar S (2019) Proceedings of the 2018 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. BMC Bioinformatics 20: 95.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Thrash A, Arick M-2nd, Barbato RA, Jones RM, Douglas TA, Esdale J, Perkins EJ, Garcia-Reyero N (2019) Keanu: A novel visualization tool to explore biodiversity in metagenomes. BMC Bioinformatics 20: 103.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kalindamar S, Lu J, Abdelhamed H, Tekedar HC, Lawrence ML, Karsi A (2019) Transposon mutagenesis and identification of mutated genes in growth-delayed Edwardsiella ictaluri. BMC Microbiology 19(1): 55.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Takac T, Pechan T, Samajova O, Samaj J (2019) Proteomic analysis of arabidopsis Plda mutants revealed an important role of phospholipase D alpha 1 in chloroplast biogenesis. Frontiers in Plant Science 10: 89.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Dutra GA, Ishak GM, Pechanova O, Pechan T, Peterson DG, Jacob JCF, Willard ST, Ryan PL, Gastal EL, Feugang JM (2019) Seasonal variation in equine follicular fluid proteome. Reproductive Biology and Endocrinology 17(1): 29.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Gastal GDA, Aguiar FLN, Ishak GM, Cavinder CA, Willard ST, Ryan PL, Feugang JM, Gastal EL (2019) Effect of cryopreservation techniques on proliferation and apoptosis of cultured equine ovarian tissue. Theriogenology 126: 88-94.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Moss JB, Gerber GP, Schwirian A, Jackson AC, Welch ME (2019) Evidence for dominant males but not choosy females in an insular rock iguana. Behavioral Ecology 30(1): 181-193.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wang X-Q, Allen TW, Wang H, Peterson DG, Nichols RL, Liu A, Li X-D, Deng P, Jia D, Lu S-E (2019) Development of a qPCR protocol to detect the cotton bacterial blight pathogen, xanthomonas citri pv. malvacearum, from cotton leaves and seeds. Plant Disease 103(3): 422-429.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Singh B, Chastain DR, Jumaa S, Wijewardana C, Redona ED, Gao W, Reddy KR (2019) Projected day/night temperatures specifically limits rubisco activity and electron transport in diverse rice cultivars. Environmental and Experimental Botany 159: 191-199.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Adhikari P, Lee CH, Cosby DE, Cox NA, Kim WK (2019) Effect of probiotics on fecal excretion, colonization in internal organs and immune gene expression in the ileum of laying hens challenged with Salmonella Enteritidis. Poultry Science 98(3): 1235-1242.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Jumaa SH, Redona ED, Walker T, Gao W, Reddy KR (2019) Developing screening tools for early-season high- and low-temperature stress tolerance in rice. Sabrao Journal of Breeding and Genetics 51(1): 12-36.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Holtcamp AJ, Sukumaran AT, Schnedler AE, McClenton BJ, Kunze E, Calkins CR, Karisch BB, Burnett DD, Dinh TTN (2019) Effects of feeding endophyte-infected tall fescue seeds to stocker Angus steers on retail quality attributes of beef strip steaks. Meat Science 149: 31-39.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Siddell SG, Walker PJ, Lefkowitz EJ, Mushegian AR, Adams MJ, Dutilh BE, Gorbalenya AE, Harrach B, Harrison RL, Junglen S, Knowles NJ, Kropinski AM, Krupovic M, Kuhn JH, Nibert M, Rubino L, Sabanadzovic S, Sanfacon H, Simmonds P, Varsani A, Zerbini FM, Davison AJ (2019) Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018). Archives of Virology 164(3): 943-946.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Kordon AO, Abdelhamed H, Ahmed H, Baumgartner W, Karsi A, Pinchuk LM (2019) Assessment of the live attenuated and wild-type edwardsiella ictaluri-induced immune gene expression and langerhans-like cell profiles in the immune-related organs of catfish. Frontiers in Immunology 10(MAR): 392.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Durfey CL, Swistek SE, Liao SF, Crenshaw MA, Clemente HJ, Thirumalai RVKG, Steadman CS, Ryan PL, Willard ST, Feugang JM (2019) Nanotechnology-based approach for safer enrichment of semen with best spermatozoa. Journal of Animal Science and Biotechnology 10(1): 14.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: De Abrew Abeysundara P, Dhowlaghar N, Nannapaneni R (2019) Influence of cold stress on the survival of Listeria monocytogenes Bug600 and ScottA in lethal alkali, acid and oxidative stress. LWT - Food Science and Technology 100: 40-47.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Lopes DJV, Stokes CE, Bobadilha GS (2019) The use of chemical and biological agents in the recovery of heavy metals from treated woods - a brief review. BioResources 14(1): 2287-2299.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Abdelhamed H, Karsi A, Lawrence ML (2019) Efficient Gene Deletion Method for Listeria monocytogenes. Methods in Molecular Biology 2016: 159-170.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Peebles ED, Cummings TS, Barbosa TM, Wilson FD, Williams CJ, Gerard PD (2019) Comparative effects of in ovo versus subcutaneous administration of the Marek's disease vaccine and pre-placement holding time on the intestinal villus to crypt ratios of Ross 708 broilers during early post-hatch development. Poultry Science 98(2): 712-716.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Tweedell RE, Tao D, Hamerly T, Robinson TM, Larsen S, Gronning AGB, Norris AM, King JG, Law HCH, Baumbach J, Bergmann-Leitner ES, Dinglasan RR (2019) The selection of a hepatocyte cell line susceptible to Plasmodium falciparum sporozoite invasion that is associated with expression of glypican-3. Frontiers in Microbiology 10(FEB): 127.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Takac T, Samajova O, Vadovic P, Pechan T, Samaj J (2019) Shot-gun proteomic analysis on roots of arabidopsis plda1 mutants suggesting the involvement of PLDa1 in mitochondrial protein import, vesicular trafficking and glucosinolate biosynthesis. International Journal of Molecular Sciences 20(1): 82.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Schuler GA, Brown MW (2019) Description of Armaparvus languidus n. gen. n. sp. Confirms Ultrastructural Unity of Cutosea (Amoebozoa, Evosea). Journal of Eukaryotic Microbiology 66(1): 158-166.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Ravichandran A, Geng M, Hull KG, Li J, Romo D, Lu S-E, Albee A, Nutter C, Gordon DM, Ghannoum MA, Lockless SW, Smith L (2019) A novel actin binding drug with in vivo efficacy. Antimicrobial Agents and Chemotherapy 63(1): e01585-18.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Majd R, Chamanabad HRM, Zand E, Mohebodini M, Khiavi HK, Alebrahim MT, Tseng TM (2019) Evaluation of herbicide treatments for control of wild gladiolus (Gladiolus Segetum) in wheat. Applied Ecology and Environmental Research 17(3): 5561-5570.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Riggins JJ, Chupp AD, Formby JP, Dearing NA, Bares HM, Brown RL, Oten KF (2019) Impacts of laurel wilt disease on arthropod herbivores of North American Lauraceae. Biological Invasions 21(2): 493-503.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Han L, Li L, Wen F, Zhong L, Zhang T, Wan X-F (2019) Graph-guided multi-task sparse learning model: a method for identifying antigenic variants of influenza A(H3N2) virus. Bioinformatics (Oxford, England) 35(1): 77-87.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Grover CE, Arick-2nd MA, Thrash A, Conover JL, Sanders WS, Peterson DG, Frelichowski JE, Scheffler JA, Scheffler BE, Wendel JF (2019) Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing. Genome Biology and Evolution 11(1): 53-71.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Glasa M, Predajna L, Wetzel T, Rheinpfalz DLR, Soltys K, Sabanadzovic S (2019) First report of grapevine rupestris vein feathering virus in grapevine in slovakia. Plant Disease 103(1): 170.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Dhakal J, Sharma CS, Nannapaneni R, McDaniel CD, Kim T, Kiess A (2019) Effect of chlorine-induced sublethal oxidative stress on the biofilm-forming ability of salmonella at different temperatures, nutrient conditions, and substrates. Journal of Food Protection 82(1): 78-92.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Bookwalter JD, Riggins JJ, Dean JFD, Mastro VC, Schimleck LR, Sullivan BT, Gandhi KJK (2019) Colonization and Development of Sirex noctilio (Hymenoptera: Siricidae) in Bolts of a Native Pine Host and Six Species of Pine Grown in the Southeastern United States. Journal of Entomological Science 54(1): 1-18.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Adl SM, Bass D, Lane CE, Lukes J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cardenas P, Cepicka I, Chistyakova L, del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q (2019) Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Journal of Eukaryotic Microbiology 66(1): 4-119.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Showmaker KC, Sanders WS, den Akker SE-V, Martin BE, Platt-2nd RN, Stokes JV, Hsu C-Y, Bartlett BD, Peterson DG, Wubben MJ (2019) A genomic resource for the sedentary semi-endoparasitic reniform nematode, Rotylenchulus reniformis Linford & Oliveira. Journal of Nematology 51(1): 0.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Tekedar HC, Abdelhamed H, Kumru S, Blom J, Karsi A, Lawrence ML (2019) Comparative genomics of Aeromonas hydrophila secretion systems and mutational analysis of hcp1 and vgrG1 genes from T6SS. Frontiers in Microbiology 10(JAN): 3216.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Woolums AR, Karisch BB, Parish JA, Park J, Seo KS, Badial P, Olsen SC (2019) Effect of a DNA-based immunostimulant on growth, performance, and expression of inflammatory and immune mediators in beef calves abruptly weaned and introduced to a complete ration. Journal of Animal Science 97(1): 111-121.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Wijewardana C, Alsajri FA, Irby JT, Krutz LJ, Golden B, Henry WB, Gao W, Reddy KR (2019) Physiological assessment of water deficit in soybean using midday leaf water potential and spectral features. Journal of Plant Interactions 14(1): 533-543.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Saminathan T, Alvarado A, Lopez C, Shinde S, Gajanayake B, Abburi VL, Vajja VG, Jagadeeswaran G, Reddy KR, Nimmakayala P, Reddy UK (2019) Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs. Functional and Integrative Genomics 19(1): 171-190.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Alsajri FA, Singh B, Wijewardana C, Irby JT, Gao W, Reddy KR (2019) Evaluating soybean cultivars for low- and high-temperature tolerance during the seedling growth stage. Agronomy 9(1): 13.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Aldridge ME, Fearon JE, Haynes BP, Miller HM, Sanford KY, Scott RR, Anglin WW, Blalock LS, Burkes BL, Cohn-White OL, Franks BR, Giles HM, Greene AL, Hanby RD, Holliman AG, Kirby JM, Klein AW, Lehmann CA, Llyod GJ, Lore CT, Mcmurray TB, Moody ZV, Palmer BN, Pansano LV, Pickle RM, Schaeffer LM, Seidl JR, Smith JD, Stepp HF, Satrio FA, Kutchy NA, Dechert E, Rutherford C, Brown K, Purwantara B, Memili E (2019) Review: Solutions for grand challenges in Goat and Sheep production industry. Biotropia 26(1): 56-64.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Harris J, Paul O, Park SH, White SJ, Budachetri K, McClung DM, Wilson JG, Olivier AK, Thornton JA, Broadway PR, Ricke SC, Donaldson JR (2019) Oxygen deprivation influences the survival of Listeria monocytogenes in gerbils. Translational Animal Science 3(1): 9-18.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Yang Z, Hasan MS, Htoo JK, Burnett DD, Feugang JM, Crenshaw MA, Liao SF (2019) Effects of dietary supplementation of l-methionine vs. dl-methionine on performance, plasma concentrations of free amino acids and other metabolites, and myogenesis gene expression in young growing pigs. Translational Animal Science 3(1): 19-27.
        • Type: Journal Articles Status: Published Year Published: 2019 Citation: Franca FJN, Seale RD, Shmulsky R, Franca TSFA (2019) Assessing southern pine 2X4 and 2X6 lumber quality: Longitudinal and transverse vibration. Wood and Fiber Science 51(1): 2-15.