Source: UNIVERSITY OF ARKANSAS submitted to NRP
QUANTITATIVE APPROACH TO STUDY AVIAN GROWTH AND THOSE FACTORS CORRELATED WITH GROWTH SELECTION
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1017759
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Oct 1, 2018
Project End Date
May 14, 2020
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
UNIVERSITY OF ARKANSAS
(N/A)
FAYETTEVILLE,AR 72703
Performing Department
Poultry Sciences
Non Technical Summary
Currently chicken makes up approximately 75 percent of the major domesticated animals in the world, with a 2011 US population of over 19 billion. This domination is clearly linked to the general rise in per capita consumption of poultry during the same time. By 2018, Americans consumed in excess of 109 lb. of poultry per capita; of which >93 lb. were chicken alone (National Chicken Council, 2018). The modern broiler-type chicken attains a 5.5 lb. body weight in 40-42 days of age with an overall feed efficiency of less than 1.8. Approximately 85-90% of this change in growth has been attributed to selection for growth, and has been achieved by reducing the market age to the same body weight by one day per year. With continued progress for further-processed products sector of the industry there has been a shift in market age to slaughter. This has resulted in the re-emergence of physiological and metabolic syndromes. The normal growth process involves the simultaneous deposition of neurological tissue during embryonic development. Post hatch bone, muscle, and fat each exhibit an individual pattern of accumulation. The age at which selection is applied can have a tremendous impact on response (Anthony, 2017). For example, selection at the point of inflection leaves some characters in their juvenile state, while accelerating the growth of the others. For modern selection programs there is a relatively large increase in the proportion of muscle mass in chickens selected for high body weight early post hatch as compared to late selection. Domestication, controlled reproduction and genetic improvement have improved broiler survival, however, producers continue to strive for more. The broiler industry has seen new challenges in the form of obesity, skeletal problems, muscle myopathies, ascites and maladaptation to stress. Reduced reproductive performance has been observed in broiler breeders in the form of erratic ovulation and defective egg syndrome. On the male side, reports suggest the ability of the broiler-breeder to fertilize eggs is declining at a rate of 0.5% per generation. These factors challenge poultry scientists to find temporary and permanent solutions to problems as they arise in an effort to maintain animal fitness and wellbeing. From a commercial poultry breeders perspective, there are ongoing concerns that the limits of selection for growth rate and egg production may be on the horizon. In response the industry will likely place increased emphasis on new sources of genetic variation, and appropriate biomarkers for the genetic improvement of fitness and welfare related traits. Progress through traditional methods of selection has been important for continued long-term economic sustainability of poultry. The development of new nontraditional methods of selection will be necessary for continued improvement in efficiency of production.
Animal Health Component
50%
Research Effort Categories
Basic
20%
Applied
50%
Developmental
30%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
3033299108025%
3033299108150%
3033260108025%
Goals / Objectives
OBJECTIVE: Genetic selection for traits of economic importance has often been at the expense of correlated traits such as reproductive efficiency, metabolic disorders and immunological fitness. Limited information is available to describe the genetics inter- relationships or interaction of genes and their subsequent effects on traits. Therefore, the overarching goal of this project is to develop research populations to define physiological, biochemical and gene expression consequences to genetic selection in poultry using both selected and commercial lines. The more specific objectives are:1). To determine the functional mechanisms of genetic changes as a result of selection.2). To determine the effect of genotype by environmental interaction on the biochemical and physiological mechanisms involved in the expression of productive phenotypes.3). Identify and evaluate individual loci on performance phenotypes and genetic background.
Project Methods
Objective 1: To determine the functional mechanisms of genetic changes as a result of selection.Growth-Body Weight: Selection program has been established to determine the effect ofSelection for body weight (BW) or BW gain (BWG) on patterns of growth in quail. Japanese quail lines H10, H17, H28, and H40 have been selected for high rate of growth at 10, 17, 28, or 40 days of age respectively. Line HL has been selected for high growth rate between days 10-17 of age, and low BWG between 17 and 28 d of age. Line LH has been selected for a low rate of growth between 10 to 17 d of age, and a high rate of growth between 17 to 28 d of age. All lines have been selected for 35 generations and distinct patterns of growth. The Ohio State University and University of Georgia both have Japanese quail lines divergently selected for high and low 4-wk BW (HW and LW). These quail lines have been selected for high 4-week body weight for 60 and 100 generations respectively. The weight selected quail lines from these institutions have been combined at the University of Arkansas to produce a heavy random bred population, which will be used for future selection projects. Most recently this heavy random population served as the genetic base for a series of selection studies designed to investigate various methods of selecting for feed conversion including traditional and residual feed intake. This new population will continue to be maintained and routine measurements of selected and correlated traits will be made. The lines are available for use in collaborative studies.Susceptibility and resistance to rous sarcoma: Two Leghorn type populations that have exhibited resistance and susceptibility to Rous sarcoma tumor virus. Gyles et al. (1967) first reported on the development of these two lines (Arkansas Progressor and Arkansas Regressor). The Regressor line typically regressed induced. Rous sarcomas but the Progressor develops a fatal tumor. Since the two lines have been developed, various aspects of their immune system have been investigated. The lines have been characterized and fixed for various MHC blood groups.Ascites: We have developed divergent lines for susceptibility to ascites as induced by hypobaric hypoxia (Anthony and Balog, 2003). The base population for these lines was a commercial elite line that had experienced one generation of relaxed selection. This line is currently maintained with the ascites selected lines. Line selection was accomplished through family selection where sibs were selected based on performance at 9000 feet altitude. Lines are in their 22nd generation of selection and progeny are available for use for cooperatives studies. Current ascites incidence has led to the selection of the resistant line at simulated 12,000 ft. while the susceptible line is now selected at 8000 ft.Muscle: In an effort to determine the genetic component for the breast muscle condition Pale Soft and Exudative (PSE) and Dark Firm and Dry (DFD), we started research lines based on the selection for muscle color using a Minnolta Colorimeter. The trait measured (L-value) was found to be highly correlated with muscle pH and thus associated with tenderness issues often associated with PSE and DFD. We are currently in Generation 14 of this selection study and are now looking at correlated traits and how environment interacts to influence the PSE and DFD condition.Hyperplasia: Many researchers have attempted to identify genetic marker designed to influence the degree of muscle hyperplasia in developing embryos and early post hatch chicks.The hypothesis is simple in that the more muscle nuclei available the greater the opportunity of protein production and thus greater muscle mass later in life. With this in mind, research broiler lines have been divergently selected for 4-day percentage breast yield. This has been identified as an age where maximal muscle has been contributed through hyperplasia. These lines are going into generation 7 and will be explored for direct and correlated responses to selection.Objective 2: to determines the effect of genotype by environment interaction on biochemical and physiological mechanisms involved in the expression of production phenotypes.For all of the research lines described above, we have found that environmental conditions can play an important role in their selected trait response. A major component of my research program therefore, is in the study of dietary and environmental factors on nutrient utilization, requirements, oxidative stress, reproductive and immunological responses among commercial and selected strains of poultry. The questions asked include: What is the impact of genetic selection for economic traits on health, efficiency of nutrient utilization and reproductive performance of domestic poultry? What are the physiological responses to diverse environmental stressors among lines of selected birds?In many cases, our work has debunked myths put into the literature by researchers who have "identified" environmental triggers for a trait response.OBJECTIVE 3: Identify and evaluate individual loci on performance phenotypes and genetic background.The goal of quantitative traits loci (QTL), SNP and microarray studies are to identify genes that affect traits of economic importance. The ultimate goal is to evaluate identified genes for their contribution towards a phenotype. It is essential to work with randomly mating unselected populations with well-defined phenotypes. Random bred lines established by a research team include:Arkansas Relaxed Broiler Line: Previously selected pedigree elite line that has undergone 22 generations of random mating. This line served as the base population for the previously described ascites lines.Arkansas Random bred Broiler Line: This population represents a composite of 6 female and 7 male commercial parent stock available at 1996. They have been random-mated for 9 generations using 24 sire families with 3 dams per sire. The growth and reproductive performance of this random bred line is consistent with industry standards. This line served as the base population for the Muscle quality and 4-day percentage breast yield lines.Giant Jungle Fowl: Random bred population from Siapan that has been maintained in a random bred fashion since the 1940's. This line has served the base population for the Rous Sarcoma lines initiated by Dr. Roy Gyles.Random Bred Quail populations: We currently have 3 random bred Japanese quail lines that have come from different origins. Japanese quail are used for selection studies since they have short generation intervals, easy to handle and are economical to maintain.

Progress 10/01/18 to 05/14/20

Outputs
Target Audience:During 2019,information from genetic selection programs was disseminated to the proper clientele fellow researchers and industry professionals at scientific meetings including the Poultry Science Association annual meeting, the International Poultry Scientific Forum and the Gut Health Symposium through both oral presentations and abstracts. In addition, information was provided to industry professionals through meetings held either at the University or at the company's head quarters. Students at the University were also able to further understand the phenotypic and genetic selectionbeing conducted through farm tours and guest lectures on genetics related topics. Changes/Problems:As a result of minimal barn space for breeder age birds, lack of labor and funding, and the need to start an additional selection program for water efficiency, two lines divergently selected for 4-day percentage breast yield had to be terminated. At the completion of 8 generations of selection, breast samples were collected to evaluate the histology and gene expression levels of the divergent selection program. What opportunities for training and professional development has the project provided?This project provides the necessary training to graduate and undergraduate students interested in fulfilling a potential career in the genetics field. The hands on bird experience and phenotypic selection program is one of the last available programs at a college or University. Students working on the selection programs have the knowledge of how selection works and can hypothesize outcomes of various studies when the selected lines are exposed to different environmental stressors. Additionally, this program has provided knowledge on single trait selection programs that is useful to the industry as most primary breeder companies do not have the ability to run single trait selection. How have the results been disseminated to communities of interest?Several meetings have been held with industry professionals to discuss the results of the various selection programs. Presentations have been made (oral presentations and posters) at several meetings throughout the year to provide information to fellow reserachers. At the poultry science association annual meeting, a student presenter presented on the ascites lines and the marker-assisted-selection program. At the Gut Health Symposium, another student presented on the effect of heat stress on markers associated with leaky gut in broiler lines. Papers that have utilized the lines have been submitted to the Poultry Science journal (3 papers submitted) and are currently undergoing the review process. What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period, all lines will undergo another 1-2 generations of selection for their specified traits. All lines will be evaluated after each selection period for their continues improve in the phenotype of the trait as well as the overall breeding value of the flock. The divergent water selection program will continue to move forward and evaluate new technologies that may be useful in helping to determine intake in both pens of birds and individual birds. This novel selection program will utilize both family and individual selection as well as direct selection allowing for a quicker understanding of the heritability of the trait. Additionaly, further studies evaluating the effect of environment on the various selection programs can be aevaluated based on barn/time/labor constraints. Opportunities for collaborations with other researchers are also available as the lines will be in production for 6 months of the year. It is also in progress to help further disseminate this information to industry professionals and fellow researchers through publications, presentations at meetings and published fact sheets on each of the selection programs available at the University.

Impacts
What was accomplished under these goals? Objective 1. During 2019, selection programs were continued to further evaluate genetics change as a result of each selection program. The selection programs previously discussed have been selected for another generation and breeders from all lines are available for collaborative research efforts. The heavy random bred quail population underwent 2 generations of selections resulting in a total of 37 total generations of selection for body weight.This line will continue to be maintained and selected at a rate of two generations per year. The lines divergently selected for Ascites susceptibility and resistance were utilized in a Marker Assisted Selection program in which a SNP associated with Ascites resistance is currently being evaluated on a production level. The muscle color lines representing PSA and DFD-like muscle myopathies were further tested for generation 15 and breeding values evaluated throughout all 15 generations. The lines selected for 4-day percentage breast yield reached their final stage of selection before the lines were terminated. At the termination of this selective breeding program, breast samples were taken throughout the embryonic and post-hatch growth period to evaluate the histology and gene expression levels of the selection program after 8 generations of selection. A new selection program was also implemented on divergent selection for water efficiency in modern broilers. As water becomes scarce and issues associated with wet litter arise, novel methods to improve water use in broilers is imperative to the future of the broiler industry. Previously, water efficiency selection has not been evalauted in either a research or commercial setting and this selection program will be the first of its kind. These divergent lines are in the first generation of selection. Objective 2 and 3. To evaluate the effect of the genotype by environment interaction on the mechanisms involved in phenotypic expression, several studies were conducted utilizing the research lines preciously described in objective 1. The ascites susceptible and resistant lines were evaluated at local altitude for their ascites susceptibility as well as growth performance. Another sutdy was conducting evaluating three random bred broiler lines and the Jungle Fowl under both Thermal Neutral and Heat Stress conditions. Thegoal of this study was to evaluate these lines for the presence or absence of leaky gut in both environmentalconditions and to determine the effect on growth performance, feed and water efficiency and gene expression of tight junction proteins in all sections of the gut which ties into objective 3. The results of this study are still being evaluated due to to the large number of samples collected and the time consuming task of identifying gene and protein expression.

Publications


    Progress 10/01/18 to 09/30/19

    Outputs
    Target Audience:During 2019, information from genetic selection programs was disseminated to the proper clientele, fellow researchers and industry professionals at scientific meetings including the Poultry Science Association annual meeting, the International Poultry Scientific Forum and the Gut Health Symposium through both oral presentations and abstracts. In addition, information was provided to industry professionals through meetings held either at the University or at the company's head quarters. Students at the University were also able to further understand the phenotypic and genetic selection being conducted through farm tours and guest lectures on genetics related topics. Changes/Problems:As a result of minimal barn space for breeder age birds, lack of labor and funding, and the need to start an additional selection program for water efficiency, two lines divergently selected for 4-day percentage breast yield had to be terminated. At the completion of 8 generations of selection, breast samples were collected to evaluate the histology and gene expression levels of the divergent selection program. What opportunities for training and professional development has the project provided?This project provides the necessary training to graduate and undergraduate students interested in fulfilling a potential career in the genetics field. The hands-on bird experience and phenotypic selection program is one of the last available programs at a college or University. Students working on the selection programs have the knowledge of how selection works and can hypothesize outcomes of various studies when the selected lines are exposed to different environmental stressors. Additionally, this program has provided knowledge on single trait selection programs that is useful to the industry as most primary breeder companies do not have the ability to run single trait selection. How have the results been disseminated to communities of interest?Several meetings have been held with industry professionals to discuss the results of the various selection programs. Presentations have been made (oral presentations and posters) at several meetings throughout the year to provide information to fellow reserachers. At the poultry science association annual meeting, a student presenter presented on the ascites lines and the marker-assisted-selection program. At the Gut Health Symposium, another student presented on the effect of heat stress on markers associated with leaky gut in broiler lines. Papers that have utilized the lines have been submitted to the Poultry Science journal (3 papers submitted) and are currently undergoing the review process. What do you plan to do during the next reporting period to accomplish the goals?During the next reporting period, all lines will undergo another 1-2 generations of selection for their specified traits. All lines will be evaluated after each selection period for their continues improve in the phenotype of the trait as well as the overall breeding value of the flock. The divergent water selection program will continue to move forward and evaluate new technologies that may be useful in helping to determine intake in both pens of birds and individual birds. This novel selection program will utilize both family and individual selection as well as direct selection allowing for a quicker understanding of the heritability of the trait. Additionaly, further studies evaluating the effect of environment on the various selection programs can be aevaluated based on barn/time/labor constraints. Opportunities for collaborations with other researchers are also available as the lines will be in production for 6 months of the year. It is also in progress to help further disseminate this information to industry professionals and fellow researchers through publications, presentations at meetings and published fact sheets on each of the selection programs available at the University.

    Impacts
    What was accomplished under these goals? Objective 1. During 2019, selection programs were continued to further evaluate genetics change as a result of each selection program. The selection programs previously discussed have been selected for another generation and breeders from all lines are available for collaborative research efforts. The heavy random bred quail population underwent 2 generations of selections resulting in a total of 37 total generations of selection for body weight.This line will continue to be maintained and selected at a rate of two generations per year. The lines divergently selected for Ascites susceptibility and resistance were utilized in a Marker Assisted Selection program in which a SNP associated with Ascites resistance is currently being evaluated on a production level. The muscle color lines representing PSA and DFD-like muscle myopathies were further tested for generation 15 and breeding values evaluated throughout all 15 generations. The lines selected for 4-day percentage breast yield reached their final stage of selection before the lines were terminated. At the termination of this selective breeding program, breast samples were taken throughout the embryonic and post-hatch growth period to evaluate the histology and gene expression levels of the selection program after 8 generations of selection. A new selection program was also implemented on divergent selection for water efficiency in modern broilers. As water becomes scarce and issues associated with wet litter arise, novel methods to improve water use in broilers is imperative to the future of the broiler industry. Previously, water efficiency selection has not been evalauted in either a research or commercial setting and this selection program will be the first of its kind. These divergent lines are in the first generation of selection. Objective 2 and 3. To evaluate the effect of the genotype by environment interaction on the mechanisms involved in phenotypic expression, several studies were conducted utilizing the research lines preciously described in objective 1. The ascites susceptible and resistant lines were evaluated at local altitude for their ascites susceptibility as well as growth performance. Another sutdy was conducting evaluating three random bred broiler lines and the Jungle Fowl under both Thermal Neutral and Heat Stress conditions. The goal of this study was to evaluate these lines for the presence or absence of leaky gut in both environmental conditions and to determine the effect on growth performance, feed and water efficiency and gene expression of tight junction proteins in all sections of the gut which ties into objective 3. The results of this study are still being evaluated due to to the large number of samples collected and the time consuming task of identifying gene and protein expression.

    Publications