Source: MICHIGAN STATE UNIV submitted to NRP
INTEGRATING LANDSCAPE, BIOTIC, AND ANTHROPOGENIC DATA SOURCES TO ASSESS FISH BIODIVERSITY AND FISHERIES MANAGEMENT AT MACROSCALES.
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1016288
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Aug 1, 2018
Project End Date
Jul 31, 2023
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
MICHIGAN STATE UNIV
(N/A)
EAST LANSING,MI 48824
Performing Department
Fisheries & Wildlife
Non Technical Summary
The science of ecology has long sought to explain why particular species are located in particular places on Earth, and why some regions contain many more species than other regions. As humans have altered the planet, ecologists have placed more and more emphasis on investigating the services that biodiversity (Earth's living species) provides to humans. Although the importance of biodiversity to human well-being is becoming very clearly established, management decisions that are relevant to biodiversity are often constrained by (1) lack of detailed information, across broad geographic regions, regarding the distribution of species, (2) incomplete understanding of the natural and human-determined features that most strongly affect biodiversity, and (3) incomplete assessment of the success of conservation efforts at safeguarding biodiversity. The 3 goals of this research project are designed to reduce these 3 constraints.This collaborative research integrates geographic context (GIS-based data), lake biological monitoring data, and spatial patterns both of anthropogenic stressors and conservation/management efforts to quantify the complex relationships and interactions, ranging multiple spatial scales, among them. In short, we are addressing the fundamental question: What drivers and interactions, at multiple spatial scales, contribute to spatial variability of lake fish community diversity? Our analyses will document critically important patterns of biodiversity, identify factors and spatial scales most highly associated with biodiversity, and evaluate the effectiveness of conservation and management programs to safeguard biodiversity.
Animal Health Component
50%
Research Effort Categories
Basic
30%
Applied
50%
Developmental
20%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
1350210107035%
1310320107015%
1340210107015%
1360399107035%
Goals / Objectives
The goals of this study are to:1) Integrate multiple spatially-explicit data sources (including lake ecological setting, lake water chemistry and biological monitoring, and fisheries conservation and management actions) to address Goals 2 and 3 and facilitate lake research,2) Determine how spatial variation in ecological setting affects diversity within and among lake fish communities, and3) Evaluate effects of conservation (i.e., restoring hydrologic connectivity) and management (i.e., sportfish stocking) on fish communities and fish population demographics.
Project Methods
Goal 1: Integrate multiple spatially-explicit data sources (including lake ecological context, lake water chemistry and biological monitoring, and fisheries conservation and management actions) to address Goals 2 and 3 and facilitate lake researchThis research builds on previous accomplishments of my collaborators and I in terms of integrating ecological context (hydrogeomorphic) data, lake water chemistry data, and surface water connectivity data (Soranno et al. 2015). In this next phase of research, we are adding biological and conservation/management data to the existing lake database (LaGOS). Specifically, we will compile a macroscale lake fish database (FINS; Fish from INland lakeS) at multiple levels of biological organization and spanning multiple US states. Although macroscale studies of lake fishes are relatively rare, fish data are more widely collected than are data for other lake biota, both in terms of number of systems sampled and data at various levels of biological organization. A transboundary fish database is desperately needed by ecologists and conservationists across the US to facilitate new macroscale research in freshwaters (Bonar 2009). The creation of FINS will fill these needs. Although other fish-related databases exist (e.g., VertNet; http://vertnet.org/, FishBase; http://www.fishbase.org/home.htm), they do not contain the detailed individual-level data required to make inferences about the effects of global change on multiple levels of biological organization, nor are they linked to ecological context data. By creating FINS, we will capitalize on the vital ecological-context information available in existing databases (e.g., LAGOS-US, an NSF-funded project; Patricia Soranno, pers. comm.), while extending such databases into the biotic realm. Collectively, my collaborators and I already have fish data in-hand for several thousand lakes located in multiple states (e.g., Pennsylvania, Minnesota, Wisconsin, and Michigan).Because lake fishes are influenced by fisheries conservation/management activities such as habitat rehabilitation and stocking, we must consider these factors when integrating lake fish data into applications of macro-ecological understanding. State-specific records of fisheries management practices exist in the form of stocking records, and past and current fishing regulations, and site-specific habitat rehabilitation projects. However, these vital information sources also have not been compiled for lakes across broad geographic scales. Therefore, we will work to incorporate these data, as available from state agencies, into FINS. For example, we will compile the number, size, and species of fish stocked through time in individual lakes.Goal 2: Determine how spatial variation in ecological setting affects diversity within and among lake fish communitiesUnderstanding the multi-scaled relationship between lake ecological setting and fish community diversity requires quantifying spatial patterns of diversity's component parts (i.e., ?- and β-diversity) across a large spatial extent, and quantifying the relationships between those diversity components and drivers acting at multiple scales. There have been many debates in the ecology literature about the best way to estimate β-diversity (e.g., Chao et al. 2012; Socolar et al. 2016). We will use the pairwise β-diversity approach (Marion et al. 2017), because this approach produces unbiased indices of β-diversity when sample size differs among regions. We will calculate pairwise dissimilarity indices between all pairs of sampled lakes within a region after assembling a species presence-absence matrix. ?-diversity will be quantified as species richness for each lake. Recently my lab established a statistical protocol using rarefaction techniques that evaluates if fish survey sampling effort was sufficient to reliably characterize species richness. We will continue to apply these analyses to fish survey data that we receive from fisheries agencies as we build FINS.To quantify the multi-scaled ecological drivers and their interactions that explain variation in fish diversity, we will conduct CART analyses (De'ath and Fabricius 2000) to quantify filter architecture and identify important drivers and interactions (e.g., Figure 1). For ?-diversity, CARTs will include isolation- (e.g., surface water connectivity metrics, stocking) and extinction-based (e.g., lake morphometry and climate metrics) drivers, as well as region membership, allowing us to identify differences in the relative importance of particular isolation- and extinction-drivers among regions or across scales (CSIs). For β-diversity (the average pairwise dissimilarity value per region), CARTs will include regional-scale ecological drivers (e.g., topographic relief throughout the region, climate, prevalence of dams) to understand why some regions contain lakes with very similar fish assemblages, whereas other regions contain lakes that vary substantially in their fish assemblages.Goal 3: Evaluate effects of conservation (i.e., restoring hydrologic connectivity) and management (i.e., sportfish stocking) on fish communities and fish population demographics.This objective represents the newest component of my research program. We will gain insights into this objective through the CART analysis conducted for Goal 2. For example, we will learn if regions with restored hydrological connectivity differ from other regions in terms of lake species richness and diversity. We will also learn if prevalence of past sportfish stocking explains significant amounts of variation in fish species richness among lakes. Based on the findings from Goal 2, we will initiate analyses that address Goal 3 more specifically. To do so, we will foster discussions and collaborations with individuals with statistical modeling expertise. Additionally, we will work with state management agencies, to better identify their questions and goals related to their conservation and management efforts. We will then finetune our analytical plans to better align with the manager's questions and goals.

Progress 10/01/19 to 09/30/20

Outputs
Target Audience:Our target audiences have included ecologists, conservationists, fisheries scientists, natural resource management agencies, individual stakeholders (especially those living near lakes), students, and NGOs. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project has included one graduate student and two undergraduate students, who have learned novel analysis techniques, and gained experience in public speaking, data analysis, and lake management decisions. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?We will publish the manuscripts described above and move on conducting additional analysis and preparing a manuscript that quantifies spatial patterns of alpha and beta fish diversity in Michigan lakes.

Impacts
What was accomplished under these goals? We have conducted analyses and made progress on manuscripts relevant to these goals. Most notably, we have written a first draft of a manuscript, to be submitted in December 2020, that makes multi-lake survey data available for Michigan lakes and streams. We have also submitted a manuscript for publication that integrates lake and stream data to quantify spatial patterns of fish communities in novel ways. The manuscript received favorable review and a revised version was submitted in September, 2020.

Publications


    Progress 10/01/18 to 09/30/19

    Outputs
    Target Audience:Our target audiences include ecologists, conservationists, natural resource management agencies, individual stakehoklderes (especially those living near lakes), students, and NGOs. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Two undergraduate students and a graduate student have contributed to this research project. The undergraduates co-presented a talk at MSU's Undergraduate Research and Arts Forum in Spring 2019 and each undergraduate earned Independent Study academic credit. The graduate student conducted additional analyses and presented findings at a recent international fisheries conference. How have the results been disseminated to communities of interest?Results of the rarefaction curve analysis were presented at MSU, at a regional lakes conference, and at an international fisheries conference. We also have communicated our findings to the Fisheries Division of the Michigan DNR. What do you plan to do during the next reporting period to accomplish the goals?During the next year, we will analyze our data to calculate spatial patterns of alpha (within lake) and beta (between lake) fish species diversity. We will also begin to explore the natural and anthropogenic landscape features, as well as lake-specific features that explain variation in these diverstiy metrics. In particular, we will explore the effects of connectivity among water bodies on fish diversity metrics. We also will continue to work on our evaluation of the Michigan DNR Fisheries Divsiion Status and Trends program, and we will complete our manuscript that makes the fish assemblage data publicly available. Bremigan will also recruit a graduate student to the project. We will continue our discussions with Fisheries Division to acquire their shoreline habitat monitoring data, and we will integrate historic fish stocking records, as available, into the database.

    Impacts
    What was accomplished under these goals? We have made significant progress, especially towards Goal 1, in this year of the project. We have acquired all of the lake fish species composition data from the Michigan DNR and merged it with a wealth of publicly available data on natural and anthropogenic features of the landscape (and lake ecosystems themselves) and lake water chemistry. In the first year of the project we developed methods, using rarefaction curves, to assess if sampling was adequate to provide reliable estimates of species composition in the Michigan DNR lake fish assemblage data. In this past year we have applied those analytical techniques to all of the Michigan lake data. We summarized our findings in 3 oral presentations. We also have outlined and begun to write a manuscript, in collaboration with Michigan DNR collaborators, that will make the fish assemblage data publicly available. In addition, we have made progress towards providing an evaluation of the overall Status and Trends Program of the Michigan DNR Fisheries Division. Based on this evaluation, we have begun to plan a mansucript that will demonstrate our approach to determining if monitoring programs, such as the MDNR program, are allocating sampling effort in an effective manner.

    Publications


      Progress 08/01/18 to 09/30/18

      Outputs
      Target Audience:Our target audiences include ecologists, conservationists, natural resource management agencies, individual stakehoklderes (especially bthose living near lakes), students, and NGOs. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Two undergraduate students and a graduate student have contributed to this research project. The undergraduates presented a poster at MSU's Undergraduate Research and Arts Forum in Spring 2018 and eacj undergraduate earned Independent Study academic credit. The graduate student conducted preliminary analysis, using our 'practice data' while enrolled in a course on Bayesian statistical analyses and mixed models. How have the results been disseminated to communities of interest?Results of the rarefaction curve analysis were presented in a student poster at MSU. We also have communicated our plans to the Fisheries Division of the Michigan DNR. What do you plan to do during the next reporting period to accomplish the goals?During the next year, we will integrate the complete fish catch data from the Status and Trends database with the lake water chemistry and ecological setting data. We also will continue our discussions with Fisheries Division to acquire their shoreline habitat monitoring data, and we will integrate historic fish stocking records, as available, into the database. We will complete our analysis of rarefaction curves in order to identify (and remove from analysis) the relatively few lake survey efforts that did not adequately sample the fish assemblage (resulting in species richness and composition estimates that are not reliable). We will calculate Beta diversity for our statewide data, and produce maps documeting spatial patterns of alpha, beta, and gamma diversity. We will draft a publication summarizing these efforts, which will leave us well poised to explore the drivers of the spatial patterns of diversity, at the local and regional scales, that we document.

      Impacts
      What was accomplished under these goals? We have made good progress, especially towards Goal 1, in the first year of the project. During this past year, we focused on (a) developing our methods, using a realtively small but representative dataset, and (b) acquiring the data we will be integrating for our analysis that associated with Goal 2 (and contributing, ultimately, to Goal 3). We have developed methods for generating rarefaction curves for each lake-gear type combination within the Michigan Department of Natural Resoruces, Fisheries Division, Lake Status and Trends Data Base. These rarefaction curves, by randomly subsampling from the data for each lake and gear type combination, capture the relationship between number of fish captured and number of species detected. Using this relationship, the asymptotic species richness for that lake-gear type is calculated. using our 'practice dataset' we compared the number of species observed (again, for each unique lake-gear type combination) to the aymptotic species richness. The very strong positive relationship between observed and predicted species richness indicates that in the majority of cases, the monitoring program collected sufficient fish to produce reliable estimates of species richness. We also dewveloped our approach to calculating Beta diversity, which captures the differences in species composition among communities (lakes in our case) within a region. With regards to acquiring the data, we have recently acquired the complete (2002 - present) data from Fisheries Division with regards to the number and species composition of fish captured for each unique lake-gear type combination. We already have access to the landscape data, and so we are on track to integrate the multiple spatially-ecplicit data sources required to complete Goals 2 and 3. Finally, we completed preliminary analysis related to Goal 2, which has helped us to further refine our hypotheses and planned analyses.

      Publications

      • Type: Journal Articles Status: Published Year Published: 2018 Citation: Williamson, T.J., M.J. Vanni, M.J. Gonzalez, W.H. Renwick, M.T. Bremigan, and J.D. Conroy. 2018. The importance of nutrient supply by fish excretion and watershed streams to a eutrophic lake varies with temporal scale over 19 years. Biogeochemistry 140:233-253.