Source: University of Maryland Eastern Shore submitted to
PREVALENCE AND ANTIMICROBIAL RESISTANCE OF SALMONELLA IN ORGANIC AND NON-ORGANIC CHICKENS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1016035
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
May 22, 2018
Project End Date
Apr 30, 2022
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Project Director
Parveen, SA.
Recipient Organization
University of Maryland Eastern Shore
11868 College Backborne Road
Princess Anne,MD 21853
Performing Department
Agriculture
Non Technical Summary
With over one million cases each year in the United States (U.S), salmonellosis is the number one foodborne illness that results in hospitalization and/or death, and causes approximately $365 million in annual direct medical costs. Salmonella is common in poultry and is spread to humans by contaminated meat. The continual recovery of antibiotic resistant (AR) bacteria is a global epidemic and non-typhoidal AR Salmonella is said to be responsible for 100,000 illness and approximately 40 deaths in the U.S. A few studies were conducted on the prevalence and antimicrobial resistance of Salmonella in retail chicken. However, adequate information is not available about the prevalence and antimicrobial resistance of Salmonella in organic and non-organic chickens at retail stores on Delmarva. The overall goal of this study is to address this data gap through following five specific objectives: 1) to determine the prevalence of Salmonella in organic and non-organic chickens; 2) to serotype Salmonella isolates recovered from organic and non-organic chickens; 3) to investigate antimicrobial resistance profiles for these isolates; 4) to explore the virulence properties of isolated Salmonella; and 5) to develop outreach and extension programs for control of Salmonella in organic and non-organic chickens. The findings of this study will also define the antibiotic resistant profiles and virulence properties of Salmonella recovered from two groups of chickens on Delmarva. This multidisciplinary initiative will also enhance the research capacity of the University of Maryland Eastern Shore in food and agricultural sciences through training of faculty, staff, undergraduate and graduate students, and active collaboration with the poultry industry.
Animal Health Component
88%
Research Effort Categories
Basic
10%
Applied
88%
Developmental
2%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
7123299110075%
7234010104025%
Goals / Objectives
The overall goal of this study is to investigate the prevalence and antimicrobial resistance of Salmonella in organic and non-organic chickens at retail stores on Delmarva.The specific goals are as follows:To determine the prevalence of Salmonella in organic and non-organic chickens.To serotype Salmonella isolates recovered from organic and non-organic chickensTo investigate antimicrobial resistance profiles for these isolates.To explore the virulence properties of Salmonella isolated from organic and non-organic chickens.To develop outreach and extension programs for control of Salmonella in organic and non-organic chickens.
Project Methods
Whole broiler carcass/chicken part samples (organic and non-organic) will be collected from three retail stores in the Delmarva region at monthly intervals for a period of two years. On each sampling day, 20 organic and 20 non-organic chicken samples will be collected. Every attempt will be made to collect samples from the same three stores. If samples are not available in three stores, other stores will be included for collection of samples. All samples will be placed in coolers with ice and transported to the laboratory within 2 h of collection and will be processed immediately.Following aseptic techniques each carcass will be placed in a 3,500-ml sterile plastic stomacher bag (Thermo Fisher Scientific, Hampton, NH). Five hundred milliliters of sterile buffered peptone water (BPW; Thermo Fisher) will be added to the interior and exterior surfaces of each carcass, and the carcass in the bag will be shaken vigorously for 1 min. The bag containing the whole carcass and rinse solution will be incubated at 37ºC for 24 h. After incubation, the samples will be screened for Salmonella using the BAX system, a commercial PCR-based system (DuPont Qualicon Inc., Wilmington, Del.). Samples positive for Salmonella with the BAX system will be added to 0.1 ml into Rappaport Vassiliadis (Becton Dickinson [BD], Sparks, MD) broth tube, and tube will be incubated at 42ºC for 24 h. Enrichment broth will be streaked onto xylose lysine Xylose lysine agar supplemented with Tergitol 4 (XLT4) (BD) and incubated for 24 to 48 h at 37°C. Finally, presumptive colonies will be serologically confirmed with polyvalent serum A-V for Salmonella.All Salmonella isolates will be serotyped by standard methods using reagents prepared in accordance with World Health Organization guidelines at the USDA National Veterinary Services Laboratories (NVSL) (Ames, IA). The Minimal Inhibitory Concentration (MICs) will be determined using the Sensititre® micro-broth dilution method according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI). The criteria will be used for interpretation of the results in accordance with testing standards and interpretive criteria provided by CLSI. The following MIC ranges will be tested for 15 antimicrobials of veterinary and human health importance: amikacin (0.5 to 32 µg/ml), amoxicillin-clavulanic acid (0.5/1 to 16/32 µg/ml), ampicillin (1 to 32 µg/ml), cefoxitin (0.5 to 32 µg/ml), ceftiofur (0.12 to 8 µg /ml), ceftriaxone (0.5 to 64 µg/ml), chloramphenicol (2 to 32 µg /ml), ciprofloxacin (0.015 to 4 µg/ml), gentamicin (0.25 to 16 µg/ml), kanamycin (8 to 64 µg/ml), nalidixic acid (0.5 to 32 µg/ml), streptomycin (32 to 64 µg/ml), sulfisoxazole (16 to 512 µg/ml), tetracycline (4 to 32 µg/ml), and trimethoprim-sulfamethoxazole (0.12/2.38 to 4/76 µg/ml). Escherichia coli ATCC 25922, E. coli ATCC 35218, Enterococcus faecalis ATCC 51299, and Pseudomonas aeruginosa ATCC 27853 will be used as controls. The MICs will be determined as the lowest concentration of an antimicrobial that completely inhibited the growth of bacteria. Multidrug resistance will be defined as presence of resistance to two or more antibiotics.All isolates will be analyzed for virulence genes invA, spvC, and pagC as these genes play important roles in the establishment of infection in humans by PCR using the methods previously described. Amplifications will be carried out in a 50 µl reaction mixture containing deoxynucleotide triphosphates (dATP, dGTP, dCTP, dTTP) at a concentration of 0.25mM each, 2.5 mM MgCl2, 50 pmol of each primer, 1 U of Gold Taq DNA polymerase (Promega, Madison, WI), 2 µl of DNA template and distilled water. Following parameters will be uses for amplification: denaturation at 94?C for 7 min (5 min for spvC) then 30 cycles of 94?C for one minute, various annealing temperatures ) for 1.5 min, and 72?C for one minute, and a final extension at 72?C for 5 min (7 min for pagC and spvC). For all reactions, S. Typhimurium strain Lt-2 x3324 containing a recombinant plasmid with invA, E. coli DH5-a containing a recombinant plasmid with spvC, and S. Typhimurium SR 11 x3337 containing a recombinant plasmid with pagC (23, 26, 27) will be used as positive controls and Escherichia coli DH5-a (Invitrogen, Carlsbad, CA) will be used as negative control. The PCR products will be separated by electrophoresis in a 1% agarose gel. After electrophoresis, the amplified products will be stained with ethidium bromide solution (40 mg/mL) for 20 min and viewed with UV light.To determine the differences in the prevalence of Salmonella isolated from organic and non-organic carcasses an analysis of variance (ANOVA, P ≤ 0.05) will be used. The same method also will be used to determine the significance of differences among antimicrobial resistance phenotypes observed in Salmonella isolates recovered from two groups of carcasses. All computations will be performed with the STATISTIX 8.0 software program.The results of this study and how they may be of value to the poultry industry and regulatory agencies will be communicated to the regional, national and international poultry industry. Project results will be shared via classroom discussion, presentations at professional and industry meetings, and regulatory conferences. One or more PowerPoint presentations will be made available for trainer and students, and will be posted online for download. Peer-reviewed journal articles, magazines or newsletters will be used as appropriate for the information to be shared and the target audience.An evaluation committee as well as advisory committee comprised of investigators, and external evaluators will be established during the initial project planning meeting. They will meet at least three times annually to evaluate the progress of the projects and determine if modifications are needed. In addition, PDs will regularly conduct meetings with the involved students and technicians. Their needed skills and knowledge for the projects will be tested on a regular basis in order to maintain a consistent and competent level of research expertise. Samples will be promptly processed and data will be tightly scrutinized so that timely adjustments can be made to procedures, if needed.

Progress 10/01/19 to 09/30/20

Outputs
Target Audience:Target audiences are the poultry industry, regulatory agencies, risk assessors, risk managers, and the scientific community. The efforts to reach the target audiences include presentations of the research findings at professional meetings, state and regulatory agencies, publications in peer-reviewed journals, and personal communication with industry, state and regulatory agencies. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? One technician and two undergraduate and one graduate student received training in microbiology, molecular biology, and poultry safety. The graduate student also received training on bioinformatics to analyze the metagenomic data. One graduate student attended and presented research findings at a national professional meeting. PDs and students attended a couple of professional meetings to update the knowledge in this area. How have the results been disseminated to communities of interest?Findings of this project were shared with the students of advanced food microbiology, food microbiology laboratory, and seminar in food science and technology courses at the University of Maryland Eastern Shore; the poultry industry; and regulatory agencies through classroom discussion, personal communication, outreach and extension activities. Furthermore, one presentation was made at a national meeting and one manuscript was submitted to a peer reviewed journal. What do you plan to do during the next reporting period to accomplish the goals?Continue the sample collection and determination of the prevalence of Salmonella in organic and non-organic chickens; serotype Salmonella isolates recovered from organic and non-organic chickens; investigate antimicrobial resistance profiles for these isolates; explore the virulence properties of Salmonella isolated from organic and non-organic chickens; analysis of metagenomic data; develop outreach and extension programs for control of Salmonella in organic and non-organic chickens.

Impacts
What was accomplished under these goals? Our initial plan was to collect samples monthly from 10/01/2019- 02/28/2021 to achieve the objective 1. Due to pandemic, laboratory lock down and non-availability of chickens in the retail store, we collected whole broiler carcasses (organic and non-organic) monthly from a retail store in the Delmarva region from 10/01/2019 to 03/01/2020. During each sampling, 20 organic and 20 non-organic carcasses were collected. All samples were placed in coolers with ice and transported to the laboratory within 2 h of collection and were processed immediately. In brief, each carcass was placed in a 4 L sterile plastic stomacher bag (Thermo Fisher Scientific, Hampton, NH). Then sterile buffered peptone water (500 mL) (BPW; Thermo Fisher Scientific, Hampton, NH) was added to the interior and exterior surfaces of each carcass, and the carcass in the bag was shaken vigorously for 1 min. The bag containing the whole carcass and rinse solution was incubated at 37 degree C for 24 h. After incubation, the sample was screened for Salmonella using the BAX system, a commercial PCR-based system (DuPont Qualicon Inc., Wilmington, Del.). The BAX testing was carried out according to manufacturer's guidelines. Samples positive for Salmonella were added (0.1 mL) into 10 mL of Rappaport Vassiliadis (Becton Dickinson [BD], Sparks, MD) broth tubes, and tubes were incubated at 42 degree C for 24 h. Enriched samples were streaked onto Xylose Lysine agar supplemented with Tergitol 4 (XLT4) (BD) and incubated at 37 degree C for 24 h. After incubation, isolated presumptive Salmonella (black colonies) were randomly selected and inoculated into Tryptic Soy Broth (TSB) and incubated at 37 degree C for 24 h in order to freeze them for further analysis. The incubated samples were centrifuged at 5000 rpm for 5 min and supernatant was discarded. The remaining pellet was resuspended in TSB with 25% glycerol and stored at -80 degree C for further analysis. In the period of 10/01/2019- 03/01/2020, 200 whole broiler carcasses (organic, n=100; nonorganic, n=100) were collected. Sixteen percent of organic and 62% of non-organic chickens were positive for Salmonella. These results suggest that there was a significance difference in the prevalence of Salmonella between organic and non-organic chickens. However, we did not observe any effect of month on the prevalence of Salmonella in chicken. A manuscript entitled " Efficacy and Quality Attributes of Antimicrobial Agents Application via a Commercial Electrostatic Spray Cabinet to Inactivate Salmonella on chicken thigh meat" has been prepared and submitted to the Journal "Food Microbiology". This study was basically designed to investigate the effects of antimicrobial agents (Lauric arginate, Peracetic acid) on the prevalence of Salmonella in chicken. The results indicate that the antimicrobial agents were effective to control Salmonella in chicken meat. The method of application and the order of the application of antimicrobial agents played a significant role in the reduction of Salmonella in chicken. The color, water holding capacity, and texture did not differ significantly, but resulted in a significantly strong aroma and flavor. An experiment was completed to evaluate sodium ferrate as a green processing technology to control Salmonella and Campylobacter in chicken. The results of this study indicate that the application of sodium ferrate as an antimicrobial agent can significantly reduce Salmonella and Campylobacter in chicken. The collaborative project with a biotech company to determine the effects of microbial community on the prevalence of Salmonella in organic and non-organic chickens has been completed. Currently, data analysis is underway. In addition, protocols for antibiotic susceptibility testing have been developed and standardized. PDs and students shared research outcomes and challenges once a month through conference calls or in person meetings. The PD also met with students and the technician every week to discuss the progress of the project. The findings of this study will provide valuable information about the prevalence of Salmonella in organic and non-organic chicken in the Delmarva region. The results of this study will also shed light on the use of antimicrobial agents to control Salmonella in chicken. In addition, this study will define the antibiotic resistant profiles and virulence properties of Salmonella recovered from two groups of chickens on Delmarva. The investigators anticipate that the project will motivate minority graduate and undergraduate students to pursue higher education in molecular biology, food microbiology, and food safety as well as careers in these disciplines in academia, industry, and federal and state agencies.

Publications

  • Type: Conference Papers and Presentations Status: Accepted Year Published: 2020 Citation: Barnas, M., Jeewantha, A, McNaughton, J., Auman, S., Parveen, S., Schwarz, J., Roberts, M. 2020. An Evaluation of Sodium Ferrate as a Green Processing Chemistry. 2020 International Poultry Scientific Forum. Jan. 27-28, Atlanta, Georgia.
  • Type: Journal Articles Status: Submitted Year Published: 2020 Citation: Punchihewage-Don, A. J, Parveen, S., Schwarz, J., Hamill, L., Nindo, C., Hall, P., and Vimini, B. 2020. Efficacy and Quality Attributes of Antimicrobial Agents Application via a Commercial Electrostatic Spray Cabinet to Inactivate Salmonella on Skinless Chicken Thigh Meat. Food microbiology (Submitted).


Progress 10/01/18 to 09/30/19

Outputs
Target Audience:Target audiences are the poultry industry, regulatory agencies, risk assessors, risk managers, and the scientific community. The efforts to reach the target audiences include presentation of the research findings at professional meetings, state and regulatory agencies and personal communication with industry, state and regulatory agencies. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?One technician, one undergraduate student and one graduate student received training in microbiology, molecular biology, and poultry safety. The graduate student also received training on statistical software to analyze the data. The graduate student presented the data on a preliminary experiment in a meeting that was hosted by Perdue Inc. in 9th of May 2019. PD also presented the findings at an international conference as an invited speaker in Brazil. Moreover, PDs and students attended a couple of professional meetings to update the knowledge in this area. How have the results been disseminated to communities of interest?Findings of this project were shared with the students of advanced food microbiology, food microbiology laboratory, and seminar in food science and technology courses at the University of Maryland Eastern Shore; the poultry industry; and regulatory agencies through classroom discussion, personal communication, outreach and extension activities. Furthermore, two presentations were made at a regional and an international meeting. What do you plan to do during the next reporting period to accomplish the goals?Continue the sample collection and determination of the prevalence of Salmonella in organic and non-organic chickens; serotype Salmonella isolates recovered from organic and non-organic chickens; investigate antimicrobial resistance profiles for these isolates; explore the virulence properties of Salmonella isolated from organic and non-organic chickens; complete the metagenomic experiments; develop outreach and extension programs for control of Salmonella in organic and non-organic chickens.

Impacts
What was accomplished under these goals? To achieve the objectives of this project, project directors (PDs), one graduate student, one undergraduate student and a technician conducted several experiments to standardize the methods for the detection of Salmonella in chicken and revised the protocol based on the results of preliminary experiments. Moreover, PDs and students shared research outcomes and challenges once a month through conference calls or in person meetings. The PD also met with students and the technician every week to discuss the progress of the project. To fulfill objective one, whole broiler carcasses (organic and non-organic) were obtained monthly from a retail store in the Delmarva region from 03/01/2019- 9/30/2019. During each sampling, 20 organic and 20 non-organic carcasses were collected. All samples were placed in coolers with ice and transported to the laboratory within 2 h of collection and were processed immediately. In brief, each carcass was placed in a 4 L sterile plastic stomacher bag (Thermo Fisher Scientific, Hampton, NH). Then sterile buffered peptone water (500 mL) (BPW; Thermo Fisher Scientific) was added to the interior and exterior surfaces of each carcass, and the carcass in the bag was shaken vigorously for 1 min. The bag containing the whole carcass and rinse solution was incubated at 37 degrees C for 24 h. After incubation, the sample was screened for Salmonella using the BAX system, a commercial PCR-based system (DuPont Qualicon Inc., Wilmington, Del.). The BAX testing was carried out according to manufacturer's guidelines. Samples positive for Salmonella were added (0.1 mL) into 10 mL of Rappaport Vassiliadis (Becton Dickinson [BD], Sparks, MD) broth tubes, and tubes were incubated at 42 degrees C for 24 h. Enriched samples were streaked onto Xylose Lysine agar supplemented with Tergitol 4 (XLT4) (BD) and incubated at 37degrees C for 24 h. After incubation, isolated presumptive Salmonella (black colonies) were randomly selected and inoculated into Tryptic Soy Broth (TSB) and incubated at 37 degrees C for 24 h. The incubated samples were centrifuged at 5000 rpm for 5 min and supernatant was discarded. The remaining pellet was resuspended in TSB with 25% glycerol and stored at -80 degrees C for further analysis. Overall, 52% of organic and 61% of non-organic samples were positive for Salmonella. Less than a 60% of both organic and non-organic chickens were positive for Salmonella in the period from June to September and none of the organic chicken was reported as Salmonella positive in July 2019. These results suggest that there was no significance differences in the prevalence of Salmonella between organic and non-organic chickens. In addition, the month has no effect on the prevalence of this bacterium in chicken. Two new collaborations were established with a poultry industry (Perdue Inc.) and a biotech company (AH Pharma) to investigate the effects of antimicrobial agents (Lauric arginate, Peracetic acid and Ferrate (VI)) on the prevalence of Salmonella in chicken. The results indicate that the antimicrobial agents were effective to control Salmonella in chicken thigh meat. The order of the application of these agents plays significant role in the control of Salmonella. Another collaboration was established with a biotech company (Cosmos ID) to determine the effects of the microbial community on the prevalence of Salmonella in organic and non-organic chickens. The findings of this study will provide valuable information about the prevalence of Salmonella in organic and non-organic chicken in the Delmarva region. The results of this study will also shed light on the use of antimicrobial agents to control Salmonella in chicken. In addition, this study will define the antibiotic resistant profiles and virulence properties of Salmonella recovered from two groups of chickens on Delmarva. The investigators anticipate that the project will motivate minority graduate and undergraduate students to pursue higher education in molecular biology, food microbiology, and food safety as well as careers in these disciplines in academia, industry, and federal and state agencies.

Publications

  • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Punchihewage Don, A., J. 2019. Antimicrobials application using commercial electrostatic spray cabinet to reduce Salmonella in chicken thigh meat-updates. May 9. 2019. Perdue Inc. Salisbury. Maryland.
  • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Parveen, S. 2019. Foodborne pathogens in food chain: focus on seafood and poultry. The XXI national meeting of food analysts and VII Latin American congress of food analysts. May 26-30. 2019. Florianopolis, SC. Brazil.


Progress 05/22/18 to 09/30/18

Outputs
Target Audience:Target audiences are the poultry industry, regulatory agencies, risk assessors, risk managers, and the scientific community. The efforts to reach the target audiences will include presentation of the research findings at professional meetings, state and regulatory agencies, publications in peer-reviewed journals, and personal communication with industry, state and regulatory agencies. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The technician and students received traning in microbiology, molecular biology and poultry safety. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?Determine the prevalence of Salmonella in organic and non-organic chickens; serotype Salmonella isolates recovered from organic and non-organic chickens; investigate antimicrobial resistance profiles for these isolates; explore the virulence properties of Salmonella isolated from organic and non-organic chickens; develop outreach and extension programs for control of Salmonella in organic and non-organic chickens.

Impacts
What was accomplished under these goals? To accomplish this objective, we hired and trained a doctoral student in microbiology and molecular biology to conduct research in partial fulfillment of the requirements for his degree program. In addition, an undergraduate student and a technician trained in microbiology, molecular biology and poultry safety to conduct research for this project. Investigators, a technician, graduate and undergraduate students met a couple of times to discuss the project plan and to design experiments for this study. A protocol has been developed for analysis of samples and start- up supplies have been ordered. Moreover, investigators and students contacted several local suppliers to determine who can provide organic and non-organic chicken at the best price. The project is in its initial stage and results are inadequate to assess impact. So far, one technician, one graduate and one undergraduate student received training in microbiology and molecular biology through direct involvement in this project. The investigators anticipate that the project will motivate minority graduate and undergraduate students to pursue higher education in molecular biology, food microbiology, and food safety as well as careers in these disciplines in academia, industry, and federal and state agencies.The findings of this study will also define the, prevalence, antibiotic resistant profiles and virulence properties of Salmonella recovered from two groups of chickens on Delmarva.

Publications