Source: BENSON HILL BIOSYSTEMS, INC. submitted to NRP
NOVEL METHODS FOR PLASTID TRANSFORMATION
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1015817
Grant No.
2018-33610-28248
Cumulative Award Amt.
$99,867.00
Proposal No.
2018-00346
Multistate No.
(N/A)
Project Start Date
Jul 15, 2018
Project End Date
Mar 14, 2020
Grant Year
2018
Program Code
[8.2]- Plant Production and Protection-Biology
Recipient Organization
BENSON HILL BIOSYSTEMS, INC.
440 WEYCROFT GRANT DR
CARY,NC 275190849
Performing Department
(N/A)
Non Technical Summary
Higher plant plastids contain active homologous recombination (HR) machinery that has been harnessed for plastid transformation in a limited number of plant species. Stable plastid transformation requires homoplasmic plants in which all plastid genome (plastome) copies are transformed to avoid segregation of the plastid-encoded trait. In plant species where plastid transformation has been demonstrated to date, homoplasmy is achieved through a stochastic process by which plastome copies segregate randomly, occasionally enriching for the transformed plastome. It is unknown why this process can result in homoplasmy in dicots but not monocots, but current plastid transformation and selection mechanisms cannot generate homoplasmic monocot plastid transformants. The present project describes a novel plastid selection mechanism that will harness the native plastid HR machinery to drive plastid transformants to homoplasmy. Double-stranded break (DSB) induction actively recruits DNA repair machinery to the DSB site. This project will actively create DSBs in wild-type copies of the plastome. These DSBs will drive the plastid transformant toward homoplasmy by two complementary mechanisms:DSB induction will stimulate HR at the site of the DSBs, resulting in recombination between the transformed and the wild-type plastome that will actively incorporate the transgene(s) into all copies of the plastome.DSBs in untransformed plastome copies will remove necessary plastid genes. This will actively select against the untransformed plastome and slow its replication relative to the intact transformed plastome.Successful demonstration of the proposed plastid transformation and selection scheme will allow for the practical application of plastid transformation to all crop plants. Given the benefits of plastid relative to nuclear transformation, this represents a significant market opportunity for Benson Hill Biosystems.
Animal Health Component
70%
Research Effort Categories
Basic
30%
Applied
70%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2011530104033%
2011999104033%
2012499104034%
Goals / Objectives
The major goal of the project is to develop a novel plastid transformation technology. This technology will utilize a novel selection mechanism for selecting for transformed plastids. The technology will first be tested in tobacco, a plant species for which effective plastid transformation technologies have previously been developed. Upon demonstration of the technology in tobacco, the technology will be tested in rice, a plant species for which plastid transformation has been demonstrated, but regeneration of homoplasmic plants that reliably transmit the plastid genome-encoded traits to their progeny without the traits' segreation has not been demonstrated.
Project Methods
The project will use biolistic delivery of the reagents to tobacco and rice tissue, and will use plant tissue culture techniques to regenerate shoots and plants from transformed cells. Molecular methods including but not limited to PCR, Southern blotting, RT-PCR, Northern blotting, and restriction analyses will be used to analyze putative tobacco and rice plastid transformants. Plants will be grown in a greenhouse and cultivated using standard plant care methods and techniques.

Progress 07/15/19 to 03/14/20

Outputs
Target Audience: Nothing Reported Changes/Problems:The major problem in approach was an inability to regenerate rice shoots from the bombarded explants. This obviously hindered our ability to determine whether the proposed novel approaches to drive plastid transformants toward homoplasmy would in fact be successful. What opportunities for training and professional development has the project provided?The project provided experience for scientists and technicians to develop tissue culture protocols and to learn about plastid transformation technology, and provided an opportunity for the scientists to present their work to the internal Benson Hill R&D team. How have the results been disseminated to communities of interest?Results and ongoing experimental work were presented to the Benson Hill R&D group. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? Multiple vectors were designed, constructed, and used for bombardment of rice immature embryos and other explants. The resulting rice tissue was monitored for the presence of GFP-derived fluorescence based on the presence of a GFP-aadA fusion gene in the transformation vectors. While multiple callus pieces exhibited what appeared to be GFP-derived fluorescence, none of these calli were able to generate shoots that could be screened for plastid transformation and ultimately for homoplasmy. Multiple different tissue culture approaches were taken to try to regenerate shoots but unfortunately no shoots were produced from the rice tissue.

Publications


    Progress 07/15/18 to 03/14/20

    Outputs
    Target Audience: Nothing Reported Changes/Problems:The major problem encountered was an inability despite multiple attempts at tissue culture protocol modifications to regenerate plastid-transformed rice plants, which precluded further molecular characterization of any rice plastid transformants. What opportunities for training and professional development has the project provided?The project offered opportunities for professional development for molecular cloning of, and transformation with, plastid transformation vectors, and discussion among molecular and plant transformation technicala personnel regarding plastid transformation technologies. How have the results been disseminated to communities of interest?The results were presented to internal Benson Hill R&D groups. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

    Impacts
    What was accomplished under these goals? The envisioned plastid transformation constructs were designed and used for tobacco and rice transformation. Tobacco transformation experiments were abandoned when it was realized that the envisioned GFP visual selection strategy would not be efficient enough to provide meaningful data. The research work was therefore focused on rice where it was anticipated that greater value would be developed if the project was successful. Biolistic transformation of various rice explants was attempted and various tissue culture modifications were attempted to try to regenerate a rice plastid transformant shoot. While multiple rice callus pieces were observed with GFP fluorescence presumed to come from the plastid transformation vector, likely indicating a successful transformation event, none of these callus pieces was able to successfully regenerate a shoot for further molecular characterization.

    Publications


      Progress 07/15/18 to 07/14/19

      Outputs
      Target Audience: Nothing Reported Changes/Problems:Tobacco plastid transformation has been deprioritized in favor of a focus on rice transformaiton because it was determined that the tobacco transformation experiments added minimal value to the overall project goals. Multiple site-specific nucleases are being tested in parallel in rice transformation vectors in an attempt to maximize the likelihood of identifying one or more approaches to produce homoplasmic rice plastid transformants. What opportunities for training and professional development has the project provided?The project has resulted in the development of transformation protocols for rice plastids in-house and professional development through the various project planning discussions among Benson Hill team members. Internal presentations by the scientists performing those experiments have also provided professional development opportunities. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?Molecular characterization of the rice shoots developed to date will be a high priority. Additionally, further explants will be bombarded while molecular assessment is performed in an attempt to generate further putative rice plastid transformants.

      Impacts
      What was accomplished under these goals? Multiple transformation vectors for plastid transformation of tobacco and rice have been designed and synthesized. One insertion site in tobacco was targeted, while two different insertion sites were targeted in rice. Initial tobacco transformations were attempted, and several putative transformants were identified using aadA and spectinomycin selection. Because of difficulties in identifying GFP expressors in the absence of antibiotic selection, it was determined that assessing the novel technologies under development in tobacco would be very difficult and as a result, rice transformation has been prioritized while deprioritizing tobacco transformation. Various rice explants have been bombarded with a total of six different plastid transformation vectors. A number of shoots have been identified that are growing on streptomycin-containing medium, some of which show visible fluorescence under a microscope, indicating likely insertion of the plastid transgenes. Molecular characterization of these shoots will be performed in the near future to assess whether the transformation constructs have been inserted at the intended sites and if so, whether these plants are heteroplasmic or homoplasmic.

      Publications