Progress 03/15/18 to 03/14/20
Outputs Target Audience:Our target audience is other scientific researchers. We have disseminated our research progress with the scientific community through a peer-reviewed primary research article. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?I have been able to work with and train one postdoctoral fellow, one graduate student, and two undergraduates on this project. Further, it has allowed me to collaborate with colleagues and increase my understanding of biochemical tools such as mass spectrometry and some of the various applications and techniques that can be applied to understanding protein identity and function. How have the results been disseminated to communities of interest?We have disseminated our research progress with the scientific community through an open-accesspeer-reviewed primary research article. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
We have made significant progress in characterizing the insecticidal proteins released by Steinernema carpocapsae. Thesecretome of S. carpocapsae, which includes all of the excreted/secreted proteins (ESPs) that are released upon activation ofthe infective juvenile stage was published in 2017, and reported to contain more than 470 protein (Lu et al., 2017).From that starting point, we have performed fractionation of this crude collection of ESPs using fast protein liquidchromatography (FPLC), using a strong anion exchange column. We collected fractions and tested them for activity byinjection into Drosophila melanogaster adults. We have demonstrated that only a small number of fractions collected in thisway maintain high toxicity to adult fruit flies. By performing mass spectrometry, we have identified 84 proteins in the toxicfraction, thus narrowing down from 472 nematode-derived proteins with possible insect activity down to 84 proteins. Wedetermined that 83 of these proteins are indeed nematode-derived, but that there was one protein in this active fraction thatwas bacterial in nature, coming from the bacterial symbiont Xenorhabdus nematophila, known to be associated with S.carpocapsae. We identified the contaminating protein as XaxB (D3VB23), a 39 kDa protein present at very low levels in theactive fraction. To rule out the possibility that the toxicity we were seeing was a result of bacterial contamination, we producedrecombinant XaxB protein using E. coli and have injected it at a dose of 200 ng/fly, resulting in zero toxicity. The crude ESPsare toxic at a dose of 20 ng/fly and the active fraction containing 84 proteins is toxic at a dose of 10 ng/fly, confirming that theXaxB protein is not the source of the toxicity and that the insecticidal activity we observe is a result of nematode-derivedprotein(s). This is an exciting result as it represents the first experimental finding of genuine insecticidal activity resulting from nematode-derived proteins and confirms the core hypothesis that is foundational to this grant.We are continuing to pursue further fractionation to reduce the number of candidate toxins from 83 proteins, but we have alsobegun producing and testing candidate proteins based on their abundance in the active fraction. Thus far we have cloned, produced, and purified a chymomtrypsin-like protein, a glycosyl hydrolase, and several sPLA2 proteins. We have started to produce a sapposin-like protein and an shTk-domain-containing protein. We began to test these proteins for toxicity by injecting quantified amounts of these proteins into adult fruit flies. So far we have not identified any proteins that by themselves are toxic to the flies when injects. However, we have found that nematode-derives sPLA2 enyzmes do modulate the immune system of adult flies such that they have increased susceptibility to bacterial infection. In addition to our progress investigating and characterizing the insecticidal proteins released by S. carpocapsae, we applied our strategy to another, distantly related entomopathogenic nematode, S. feltiae. This nematode is also ageneralist insect parasite but with a narrower host range than S. carpocapsae. We have activated S. feltiae IJs, collected theirESPs, identified their ESPs using mass spectrometry, and tested the crude ESPs for insecticidal activity in adult fruit flies. Wehave shown that, similar to S. carpocapsae, S. feltiae releases a variety of proteins, and this collection of proteins is alsohighly toxic to fruit flies and other insects. We identified 266 proteins that are released by S. feltiae, and this collection of 266proteins is highly toxic to insects. In comparing the ESPs of S. feltiae to those of S. carpocapsae, we found a subset of 52proteins that are present in the ESPs of both species. This may narrow down for us the candidate toxin proteins in S.carpocapsae, if we hypothesize that the mechanism for insecticidal activity is conserved between these two species. It is anexciting finding that insecticidal toxins are present in the ESPs of both species of nematodes, as it suggests that there may beseveral potential toxins that could be discovered and evaluated for their potential use in agriculture. The results of our work onS. feltiae have recently been accepted for publication in PLoS Pathogens. While we have not yet identified any proteins that are individually toxic, we have identified many candidates and continue to work towards testing these candidates.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Chang DZ, Serra L, Lu D, Mortazavi A, Dillman AR (2019) A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema. PLoS Pathog 15(5): e1007626. https://doi.org/10.1371/journal.ppat.1007626
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Progress 03/15/18 to 02/20/20
Outputs Target Audience:Our target audience is other scientific researchers. We have disseminated our research progress with the scientific community through a peer-reviewed primary research article. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?I have been able to work with and train one postdoctoral fellow, one graduate student, and two undergraduates on this project. Further, it has allowed me to collaborate with colleagues and increase my understanding of biochemical tools such as mass spectrometry and some of the various applications and techniques that can be applied to understanding protein identity and function. How have the results been disseminated to communities of interest?We have disseminated our research progress with the scientific community through an open-accesspeer-reviewed primary research article. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
We have made significant progress in characterizing the insecticidal proteins released by Steinernema carpocapsae. Thesecretome of S. carpocapsae, which includes all of the excreted/secreted proteins (ESPs) that are released upon activation ofthe infective juvenile stage was published in 2017, and reported to contain more than 470 protein (Lu et al., 2017).From that starting point, we have performed fractionation of this crude collection of ESPs using fast protein liquidchromatography (FPLC), using a strong anion exchange column. We collected fractions and tested them for activity byinjection into Drosophila melanogaster adults. We have demonstrated that only a small number of fractions collected in thisway maintain high toxicity to adult fruit flies. By performing mass spectrometry, we have identified 84 proteins in the toxicfraction, thus narrowing down from 472 nematode-derived proteins with possible insect activity down to 84 proteins. Wedetermined that 83 of these proteins are indeed nematode-derived, but that there was one protein in this active fraction thatwas bacterial in nature, coming from the bacterial symbiont Xenorhabdus nematophila, known to be associated with S.carpocapsae. We identified the contaminating protein as XaxB (D3VB23), a 39 kDa protein present at very low levels in theactive fraction. To rule out the possibility that the toxicity we were seeing was a result of bacterial contamination, we producedrecombinant XaxB protein using E. coli and have injected it at a dose of 200 ng/fly, resulting in zero toxicity. The crude ESPsare toxic at a dose of 20 ng/fly and the active fraction containing 84 proteins is toxic at a dose of 10 ng/fly, confirming that theXaxB protein is not the source of the toxicity and that the insecticidal activity we observe is a result of nematode-derivedprotein(s). This is an exciting result as it represents the first experimental finding of genuine insecticidal activity resulting from nematode-derived proteins and confirms the core hypothesis that is foundational to this grant.We are continuing to pursue further fractionation to reduce the number of candidate toxins from 83 proteins, but we have alsobegun producing and testing candidate proteins based on their abundance in the active fraction. Thus far we have cloned, produced, and purified a chymomtrypsin-like protein, a glycosyl hydrolase, and several sPLA2 proteins. We have started to produce a sapposin-like protein and an shTk-domain-containing protein. We began to test these proteins for toxicity by injecting quantified amounts of these proteins into adult fruit flies. So far we have not identified any proteins that by themselves are toxic to the flies when injects. However, we have found that nematode-derives sPLA2 enyzmes do modulate the immune system of adult flies such that they have increased susceptibility to bacterial infection. In addition to our progress investigating and characterizing the insecticidal proteins released by S. carpocapsae, we applied our strategy to another, distantly related entomopathogenic nematode, S. feltiae. This nematode is also ageneralist insect parasite but with a narrower host range than S. carpocapsae. We have activated S. feltiae IJs, collected theirESPs, identified their ESPs using mass spectrometry, and tested the crude ESPs for insecticidal activity in adult fruit flies. Wehave shown that, similar to S. carpocapsae, S. feltiae releases a variety of proteins, and this collection of proteins is alsohighly toxic to fruit flies and other insects. We identified 266 proteins that are released by S. feltiae, and this collection of 266proteins is highly toxic to insects. In comparing the ESPs of S. feltiae to those of S. carpocapsae, we found a subset of 52proteins that are present in the ESPs of both species. This may narrow down for us the candidate toxin proteins in S.carpocapsae, if we hypothesize that the mechanism for insecticidal activity is conserved between these two species. It is anexciting finding that insecticidal toxins are present in the ESPs of both species of nematodes, as it suggests that there may beseveral potential toxins that could be discovered and evaluated for their potential use in agriculture. The results of our work onS. feltiae have recently been accepted for publication in PLoS Pathogens. While we have not yet identified any proteins that are individually toxic, we have identified many candidates and continue to work towards testing these candidates.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Chang DZ, Serra L, Lu D, Mortazavi A, Dillman AR (2019) A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema. PLoS Pathog 15(5): e1007626. https://doi.org/10.1371/journal.ppat.1007626
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Progress 03/15/18 to 03/14/19
Outputs Target Audience:We have disseminated our research progress with the scientific community through a peer-reviewed primary research article. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?I have been able to work with and train one postdoctoral fellow, one graduate student, and two undergraduates so far in working on this project. Further, it has allowed me to collaborate with colleagues and increase my understanding of biochemical tools such as mass spectrometry and some of the various applications and techniques that can be applied to understanding protein identity and function. How have the results been disseminated to communities of interest?We have disseminated our research progress with the scientific community through a peer-reviewed primary research article and plan to attend scientific conferences this coming year. What do you plan to do during the next reporting period to accomplish the goals?During this next reporting period we will continue our efforts in fractionation to narrow down the list of candidate toxin proteins. We will do this using FPLC, and combine two different types of fractionation such as anion exchange and size, using two different columns. This should increase the separation that we get and reduce our list of 83 candidate S. carpocapsae toxins. In addition to this fractionation, we will continue to choose rational candidates, express them transgenically, and test individual proteins from our list of candidates. We are currently in the process of testing 3 recombinant proteins and will test more during this next reporting period. We will also begin feeding assays using adult fruit flies and larval Manduca sexta. We will do these feeding assays with the active fractions to confirm that there is oral toxicity in the candidate toxins. We hope to be able to test individual candidate proteins in this feeding assay, but we will wait for confirmation of toxicity of the individual proteins in our injection assay before testing them in an oral assay.
Impacts What was accomplished under these goals?
We have made significant progress in characterizing the insecticidal proteins released by Steinernema carpocapsae. The secretome of S. carpocapsae, which includes all of the excreted/secreted proteins (ESPs) that are released upon activation of the infective juvenile stage was published in 2017, and reported to contain more than 470 protein (Lu et al., 2017). From that starting point, we have performed fractionation of this crude collection of ESPs using fast protein liquid chromatography (FPLC), using a strong anion exchange column. We collected fractions and tested them for activity by injection into Drosophila melanogaster adults. We have demonstrated that only a small number of fractions collected in this way maintain high toxicity to adult fruit flies. By performing mass spectrometry, we have identified 84 proteins in the toxic fraction, thus narrowing down from 472 nematode-derived proteins with possible insect activity down to 84 proteins. We determined that 83 of these proteins are indeed nematode-derived, but that there was one protein in this active fraction that was bacterial in nature, coming from the bacterial symbiont Xenorhabdus nematophila, known to be associated with S. carpocapsae. We identified the contaminating protein as XaxB (D3VB23), a 39 kDa protein present at very low levels in the active fraction. To rule out the possibility that the toxicity we were seeing was a result of bacterial contamination, we produced recombinant XaxB protein using E. coli and have injected it at a dose of 200 ng/fly, resulting in zero toxicity. The crude ESPs are toxic at a dose of 20 ng/fly and the active fraction containing 84 proteins is toxic at a dose of 10 ng/fly, confirming that the XaxB protein is not the source of the toxicity and that the insecticidal activity we observe is a result of nematode-derived protein(s). This is an exciting result as it represents the first experimental finding of genuine insecticidal activity resulting from nematode-derived proteins and confirms the core hypothesis that is foundational to this grant. We are continuing to pursue further fractionation to reduce the number of candidate toxins from 83 proteins, but we have also begun producing and testing candidate proteins based on their abundance in the active fraction. Thus far we have started to produce a sapposin-like protein, a chymomtrypsin-like protein, and an shTk-domain-containing protein. We are in the process of testing these individual candidate proteins for toxicity, all of which are highly abundant in the active ESP fraction. In addition to our progress investigating and characterizing the insecticidal proteins released by S. carpocapsae, we have begun to apply our strategy to another, distantly related entomopathogenic nematode, S. feltiae. This nematode is also a generalist insect parasite but with a narrower host range than S. carpocapsae. We have activated S. feltiae IJs, collected their ESPs, identified their ESPs using mass spectrometry, and tested the crude ESPs for insecticidal activity in adult fruit flies. We have shown that, similar to S. carpocapsae, S. feltiae releases a variety of proteins, and this collection of proteins is also highly toxic to fruit flies and other insects. We identified 266 proteins that are released by S. feltiae, and this collection of 266 proteins is highly toxic to insects. In comparing the ESPs of S. feltiae to those of S. carpocapsae, we found a subset of 52 proteins that are present in the ESPs of both species. This may narrow down for us the candidate toxin proteins in S. carpocapsae, if we hypothesize that the mechanism for insecticidal activity is conserved between these two species. It is an exciting finding that insecticidal toxins are present in the ESPs of both species of nematodes, as it suggests that there may be several potential toxins that could be discovered and evaluated for their potential use in agriculture. The results of our work on S. feltiae have recently been accepted for publication in PLoS Pathogens.
Publications
- Type:
Journal Articles
Status:
Awaiting Publication
Year Published:
2019
Citation:
Chang D, Serra L, Lu D, Mortazavi A, Dillman AR (2019). A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema. PLoS Pathogens.
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