Progress 06/01/17 to 05/31/22
Outputs Target Audience:scientists, breeding and biotechnology companies, state and federal agencies Changes/Problems:James North (white male) did not complete the program. However, he used this fellowship successfully as a springboard to enter the Auburn University Veterinary Medicine program, thus, is only partially trained in genetics but is still involved and contributing to our national needs in Animal Production and Biosecurity. Kaleigh Kozak (white female) replaced Mr. North and was making great progress towards her degree when a series of severe illnesses caused her to leave the program and return home to have greater family support. Follow-up has not been successful yet to determine her current professional status. Upon Ms. Kozak's departure, there was not sufficient time for a third student to complete a doctoral program. What opportunities for training and professional development has the project provided?Thestudents received academic training, conducted research, interacted with numerous mentors, built professional relationships, gave seminars, published in journals and attended and presented at scientific meetings as outlined in the proposal. How have the results been disseminated to communities of interest?Yes, the students are widely published and have attended and published at several scientific conferences. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
Three and eventually four good candidates were located and enrolled in the program.These students received academic training, conducted research, interacted with numerous mentors, built professional relationships, gave seminars, published in journals and attended and presented at scientific meetings as outlined in the proposal. Two of the three doctoral slots were completed or are very near to completion. Michael Coogan (white male) completed his Doctoral Program supported by the USDA-NIFA Higher Education National Needs Fellowships Program. Mr. Coogan won 3 student awards, including the 2021 Auburn University Graduate School Distinguished Dissertation Award inHumanities/Fine Arts and Biological/Life Sciences and 1st place presentation, School of Fisheries,Aquaculture, and Aquatic Sciences Student Research Symposium. He has 10published papers, twoof which arefirst authored, several with the mentoring team set up for this fellowship program, 2 first authored paper under review and numerous abstracts and presentations. Mr. Coogan is now a post-doctoral fellow at the University of New Hampshire working on Aquaculture and Aquaculture Genetics. He also formed his own consulting business in Aquaculture Genetic Enhancement and Biotechnology (Blue Evolution Aquaculture LLC). While at Auburn University, he exhibited leadership skills and took major leadership within our laboratory and in student organizations. Veronica Alston (African American female) is on schedule to receive her Doctoral Degree in August 2022. She has also been slowed by some medical problems but is overcoming these. Ms. Alston has co-authored 7journal articles but no first authored papers yet. These papers also involve the mentoring team formed for this project. This summer and fall, we anticipate that she will be submitting 3-4 first author papers that are in preparation. Ms. Alston has initiated seeking post-doctoral employment. During this program, Ms. Alston has become very adept at laboratory skills and is a good teacher. She demonstrates a different set of leadership skills than those described above that may increase her contribution to US aquaculture research in the future. She is very social and is also especially adept at tracking down different sets of expertise across campus to develop multidisciplinary teams. She is highly skilled at networking. Other outputs include improvement of the two graduate level Fish Genetics courses taught by Rex Dunham.
Publications
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Ma, X., M. Shang, M. Bangs, V. Alston, W. Wang, S. Li, D. Xing, R. M. Simora, B. Su, X. Wang, A. Moss, Y. Duong and Rex Dunham.2020. Comparative transcriptome analysis during the seven development stages of channel catfish (Ictalurus punctatus) and tra catfish (Pangasianodon hypophthalmus) reveals novel insights for the terrestrial adaption. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2020AbstractBook.pdf. p406
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Simora, R.M., S. Li, M. Coogan, N. El Husseini, W. Wang, J. Terhune, M. Liles and R. Dunham. 2020.Cathelicidin antimicrobial peptide enhances protection of channel and channel-blue hybrid catfish against Aeromonas hydrophila and Edwardsiella ictaluri infections. Book of Abstracts. Aquaculture America 2020. Honolulu, Hawaii Feb. 9-12, 2020. World Aquaculture Society.https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2020AbstractBook.pdf. p620
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Xing, D., M. Bangs, R. M. Simora, W. Wang, N. El Husseini, X. Ma, B. Su, S. Li, M. Coogan, C. W. Chen, Y. Wang, Z. Qin and R. Dunham. 2020. Generation of knock-in transgenic channel catfish Ictalurus punctatus carrying elongase gene from masu salmon Oncorhynchus masou and desaturase genes from rabbitfish Siganus canaliculatus using CRISPR/Cas9, TOL2 transposon system and double electroporation approaches. Book of Abstracts. Aquaculture America 2020. Honolulu, Hawaii Feb. 9-12, 2020. World Aquaculture Society.https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2020AbstractBook.pdf. p706
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
Coogan, M., B. Su, K. Khalil, A. Elaswad, M. Golam, Q. Khan and R. Dunham. 2019. Growth and survival of myostatin gene-edited channel catfish (Ictalurus punctatus). New Orleans, LA. World Aquaculture Society Abstract Book. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AQ2019AbstractBook.pdf
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Hettiarachchi, D., Alston, V., Gurbatow, J., Vo, K. M., Zadmajid, V., Coogan, M. P., Xing, D., El Husseini, N., Johnson, A., Wang, J., Li, S., Dunham, R. A., & Butts, I. A. E. 2020. Donor body size and sex steroid hormones impact germ cell production for creation of xenogenic catfish. AFS-USAS Virtual Student symposium 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Hettiarachchi, D., Alston, V., Gurbatow, J., Vo, K. M., Zadmajid, V., Coogan, M. P., Xing, D., El Husseini, N., Johnson, A., Wang, J., Li, S., Dunham, R. A., & Butts, I. A. E. 2020. Effects of seasonality and sex steroid hormones for optimization of stem cell extraction from mature blue catfish (Ictalurus furcatus) to produce alloxenogenic catfish. Poster for Auburn University student research symposium (2020).
- Type:
Theses/Dissertations
Status:
Under Review
Year Published:
2022
Citation:
Alston, V. 2022. Genetic Biotechnology to Improve Reproduction of North American Catfish for Aquaculture, Genetic Enhancement band Genetic Conservation. Doctoral Dissertation. Auburn University, AL.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2022
Citation:
Coogan, M., V. Alston, B. Su, K. Khalil, A. Elaswad, M. Khan, R. M.C. Simora, A. Johnson, D. Xing, S. Li, J. Wang, C. Lu, W. Wang, D. Hettiarachchi, T. Hasin, J. Terhune, I.A.E. Butts and R. A. Dunham. 2022. CRISPR/Cas-9 induced knockout of myostatin gene improves growth and disease resistance in channel catfish (Ictalurus punctatus). Aquaculture. In press.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2022
Citation:
Xing, D., B. Su, S. Li, M. Bangs, Z. Qin, D. Creamer, M. Coogan, J. Wang, R. Simora, X. Ma, D. Hettiarachchi, V. Alston, W. Wang, A. Johnson, C. Lu, T. Hasin, Y. Wang and R. Dunham. 2022. CRISPR/Cas9-mediated transgenesis of the masu salmon (Oncorhynchus masou) elovl2 gene improves n-3 fatty acid content in channel catfish (Ictalurus punctatus). Marine Biotechnology. 10.1007/s10126-022-10110-6
- Type:
Journal Articles
Status:
Published
Year Published:
2021
Citation:
Abualreesh, M., J. N. Myers, J. Gurbatow, A. Johnson, D. Xing, J. Wang, S. Li, M. Coogan, K. Vo, N. El Husseini, D. Creamer, R. A. Dunham, I. A.E. Butts. 2021. Development of an effective cryopreservation protocol for blue catfish, Ictalurus furcatus oogonia Journal: North American Journal of Aquaculture. DOI: 10.1002/naaq.10203
- Type:
Journal Articles
Status:
Accepted
Year Published:
2022
Citation:
1. Hettiarachchi, D. U., V. N. Alston, M. Shang, J. Wang, D. Xing, S. Li, L. Bern, B. Su, M. Coogan, A. Johnson, T. Hasin, W. Wang, C. Lu, R. A. Dunham and I.A.E. Butts. 2022. Producing xenogenic channel catfish, Ictalurus punctatus with cryopreserved testes and ovarian tissues of blue catfish, I. furcatus. Aquaculture. in press
- Type:
Journal Articles
Status:
Accepted
Year Published:
2022
Citation:
3. Abass, N.Y., R. M. C. Simora, J. Wang, S. Li, D. Xing, M. Coogan, A. Johnson, D. Creamer, X. Wang and R. A. Dunham. 2022. Response of cecropin transgenesis to challenge with Edwardsiella ictaluri in channel catfish Ictalurus punctatus. Fish and Shellfish Immunology. 10.1016/j.fsi.2022.05.050
- Type:
Journal Articles
Status:
Accepted
Year Published:
2022
Citation:
6. Coogan, M., V. Alston, B. Su, K. Khalil, A. Elaswad, M. Khan, A. Johnson, D. Xing, S. Li, J. Wang, C. Lu, P. Page-McCaw, W. Chen, M. Michel, W. Wang, D. Hettiarachchi, T. Hasin, I. A.E. Butts, R. D. Cone and R. A. Dunham. 2022. Improved growth and high inheritance of melanocortin-4 receptor (mc4r) mutation in CRISPR/Cas-9 gene edited channel catfish, Ictalurus punctatus. Marine Biotechnology. In Press
- Type:
Journal Articles
Status:
Published
Year Published:
2021
Citation:
Simora, R.M. C., W. Wang, M. Coogan, N. El Husseini, J. S. Terhune and R. A. Dunham. 2021. Effectiveness of cathelicidin antimicrobial peptide against ictalurid catfish bacterial pathogens. Journal Aquatic Animal Health. 33:178-189. https://doi.org/10.1002/aah.10131
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Simora, R. M. C., D. Xing, M. R. Bangs , W. Wang, X. Ma, B. Su, M. G. Q. Khan, Z. Qin, C. Lu, V. Alston, D. Hettiarachchi, A. Johnson, S. Li, M. Coogan, J. Gurbatow, J. S. Terhune, X. Wang and R. A. Dunham. 2020. CRISPR/Cas9-mediated knock-in of alligator cathelicidin gene in a non-coding region of channel catfish genome. Nature Scientific Reports. (2020) 10:22271 | https://doi.org/10.1038/s41598-020-79409-5.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2020
Citation:
Ma, X., B. Su, M. Bangs, V. Alston, N. J.C. Backenstose, R. M. Simora, W. Wang, D. Xing, S. Li, Z. Ye, A. G. Moss, T.-Y. Duong, X. Wang and R. A. Dunham. 2020. Comparative genomic and transcriptomic analyses revealed twenty-six candidate genes involved in the air-breathing development and function of the bighead catfish Clarias macrocephalus. Marine Biotechnology. doi: 10.1007/s10126-020-10005-4
- Type:
Journal Articles
Status:
Published
Year Published:
2021
Citation:
Ma, X., M. Shang, B. Su, A. Wiley, M. Bangs, V. Alston, R. M. Simora, T. M. Nguyen, N. J. C. Backenstose, A. G. Moss, T.-Y. Duong, X. Wang, R. A. Dunham. 2021. Comparative transcriptome analysis during the seven developmental stages of channel catfish (Ictalurus punctatus) and tra catfish (Pangasianodon hypophthalmus) provides novel insights for the terrestrial adaptation. Frontiers in Genetics 11:608325.doi: 10.3389/fgene.2020.608325
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Abualreesh, M., J. Myers, J. Gurbatow, A. Johnson, D. Xing, J. Wang, S. Li, M. Coogan, K. Vo, N. El Husseini, R. Dunham and I. A.E. Butts. 2020. Development of a spermatogonia cryopreservation protocol for blue catfish, Ictalurus furcatus. Cryobilogy, https://doi.org/10.1016/j.cryobiol.2020.10.010
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Abualreesh, M., J. N. Myers, J. Gurbatow, A. Johnson, D. Xing, J. Wang, S. Li, M. Coogan, K. Vo, N. El Husseini, R. A. Dunham, and I. A.E. Butts. 2020. Effects of antioxidants and antifreeze proteins on cryopreservation of blue catfish (Ictalurus furcatus) spermatogonia. Aquaculture. 531: 735966. doi.org/10.1016/j.aquaculture.2020.735966
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2021
Citation:
Coogan, M. 2021. Genetic technologies for growth enhancement in catfish. 2021 Auburn University School of Fisheries Aquaculture and Aquatic Sciences Student Research Symposium. 1st Place presentation.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2021
Citation:
Dunham, R., M. Coogan, V. Alston, L. Bern and B. Su. 2021. Direct and pleiotropic effects of gene editing myostatin and mc4r genes in channel catfish, Ictalurus punctatus. Book of Abstracts. Aquaculture America 2021. San Antonio, Texas Aug. 11-14, 2021. World Aquaculture Society. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2021AbstractBook. pdf. p98
- Type:
Conference Papers and Presentations
Status:
Accepted
Year Published:
2021
Citation:
Dunham, R., D. Hettiarachchi, V. Alston, L. Bern, S. Mei, B. Su and I. A. E. Butts. 2021. Progress in catfish xenogenesis. Book of Abstracts. Aquaculture America 2021. San Antonio, Texas Aug. 11-14, 2021. World Aquaculture Society. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2021AbstractBook. pdf. p96
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2021
Citation:
Hettiarachchi, D. U., V. Alston., J. Gurbatow, V. Zadmajid., A. Johnson, J. Wang., M. P. Coogan., D. Xing, S. Li., I. A.E. Butts and R. A. Dunham. 2021. Effect of seasonality for optimization of stem cell extraction from mature blue catfish (Ictalurus furcatus) to produce alloxenogenic catfish. Book of Abstracts. Aquaculture America 2021. San Antonio, Texas Aug. 11-14, 2021. World Aquaculture Society. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2021AbstractBook. pdf. p134
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
Abualreesh M. H., J. Gurbatow, D. Hettiarachchi, V. Alston, V. S. Hallas, M. P. Coogan, N. El Husseini, Rex A. Dunham, and I. A.E. Butts. 2020. Effects of cryoprotectants and freezing rates for preserving spermatogonial stem cells of blue catfish. Book of Abstracts. Aquaculture America 2020. Honolulu, Hawaii Feb. 9-12, 2020. World Aquaculture Society.https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AA2020AbstractBook.pdf.p9
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Progress 06/01/19 to 05/31/20
Outputs Target Audience:graduate students Changes/Problems:Our third doctoral student has dropped out of school due to health issues. We are hoping to find a replacement, but will need to primarily support that student through other funding sources. What opportunities for training and professional development has the project provided?The participating students have attended conferences, presented findings and have been taking challenging course work. Research training has been intense. How have the results been disseminated to communities of interest?
Nothing Reported
What do you plan to do during the next reporting period to accomplish the goals?We plan to continue on the current successful pathway
Impacts What was accomplished under these goals?
Two doctoral students have been trained. Both are improving greatly. Both are nearing the end of their program.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
6. Hettiarachchi, D.U., V. Alston, J. Gurbatow, K. Vo, V. Zadmajid., M. P Coogan., D. Xing, N. El Husseini, A. Johnson, J. Wang., S. Li., R. A. Dunham and I. A.E. Butts. 2020. Donor body size and sex steroid hormones impact germ cell production for creation of xenogenic catfish. Aquaculture.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
10. Myers, J.N., Z. Nichols, M. H. Abualreesh, N. Husseini, Z.G. Taylor, M. Coogan, J. Gurbatow, K Vo, V. Zadmajid, N. G. Chatakondi, R.A. Dunham and I. A. E. Butts. 2020. Impact of sperm density on hatching success for channel catfish (Ictalurus ?punctatus) ? � blue catfish (Ictalurus furcatus) ? hybrid production. Aquaculture. https://doi.org/10.1016/j.aquaculture.2020.735024
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
2. Xing, D., M. Bangs, R. M. Simora, W. Wang, N. El Husseini, X. Ma, B. Su, S. Li, M. Coogan, C.C. W. Chen, Y. Wang, Z. Qin and R. Dunham. 2020. Generation of knock-in transgenic channel catfish Ictalurus punctatus.New Orleans, LA. World Aquaculture Society Abstract Book.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
9. Simora, R. M. C., M. Bangs, T. Qin, C. Lu, V. Alston, Y. Huang, Z. Taylor, M. Coogan, J. North and R. Dunham. 2019. Generation of knock-in transgenic channel catfish Ictalurus punctatus carrying cathelicidin gene by CRISPR/CAS 9 system. Aquaculture America 2019. New Orleans, LA. World Aquaculture Society Abstract Book. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AQ2019AbstractBook.pdf p. 1015.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
11. Dunham, R. A., Z. Taylor, D. Robinson, M. Coogan, J. North, J. Gurbatow, N. El Husseini, A. Salah, R. Odin, D. Olesen, N. Chatakondi, B. Bosworth and P. Allen. 2019. Repeatability of incidence and time of ovulation, fecundity and fertility in channel catfish females induced to ovulate for production of hybrid catfish fry. Aquaculture America 2019. New Orleans, LA. World Aquaculture Society Abstract Book.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
6. Gurbatow, J., M. Abualreesh, V. Alston, D. Hettiarachchi, K. Vo, M. Bangs, C. C. W. Chen, R. A. Dunham and I. A. E. Butts. 2019. Xenogenic and stem cell transplantation success in channel catfish
Ictalurus punctatus. Aquaculture America 2019. New Orleans, LA. World Aquaculture Society Abstract Book. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AQ2019AbstractBook.pdf p. 434
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
10. Dunham, R. A., V. Alston, D. Hettiarachchi, K. Vo, M. Abualreesh, J. Gurbatow, M. Bangs, C. C. W. Chen and I. A.E. Butts. 2019. Effects of donor-recipient developmental stage and stem cell preparation on transplantation and xenogenesis success in catfish. Aquaculture America 2019. New Orleans, LA. World Aquaculture Society Abstract Book. https://wasblobstorage.blob.core.windows.net/meeting-abstracts/AQ2019AbstractBook.pdf
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