Progress 12/01/16 to 10/26/17
Outputs Target Audience:The goal of this project was to develop a broader understanding of yeast fermentation biology and to design more judicious fermentation management strategies. The target audiences for this work are the food, beverage, fuel and biotechnology fermentation industries. Much of this work has focused on the wine industry given the greater fiscal impact of premature fermentation arrest and the challenges in restarting arrested fermentations destined for human consumption. This work has been presented at national wine industry meetings, at local (California and west coast) technical meetings, and has been published in both scientific and trade journals and reported on websites of industry funding agencies and picked up by the popular technical press. In addition numerous phone calls and emails on this topic have been received and answered, on the order of 100 or more per year. Finally, I developed an issues extension program to cover these and other related fermentation management practices which includes a website that contains a diagnostic guide for problematic fermentations. I also lead the development of a new journal for the American Society of Enology and Viticulture called "Catalyst: Discovery Into Practice" specifically to provide an outlet for publication of extension of fundamental research to industry practice. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Although not a direct component of this program, the Pl has conducted workshops on fermentation management on campus and elsewhere and in multiple states. Several graduate students, PhD (2), MS (3), and visiting PhD scholars (2) have received training in this laboratory over the last fifteen month period. All 4 PhD scholars have completed their degrees within the last four months. One of the MS students has completed and the remaining 2 have drafts of their theses submitted to their committee members and should file their dissertations by the end of 2017. In addition three undergraduate students have conducted research in the lab associated with this project during the fifteen months. All of these individuals made poster or platform presentations of their research at local and/or national meetings. All students participated in writing articles for peer-reviewed journals in reviewing drafts and writing materials and methods sections. How have the results been disseminated to communities of interest?This research program is central to understanding and avoiding arrested or sluggish fermentations. This work has been presented at industry and regional meetings and on campus programs specifically targeted at extension of information (the Wine Flavor 101 program that I launched as a vehicle for dissemination of research). A fermentation management guide has been posted to our departmental website. Users of the site can find a guide to prevention of arrested wine fermentations and a diagnostic key that serves to translate the findings of this program into usable outputs for professionals and amateurs in the wine and grape industries. This website is used not only by wineries but also by those engaged in wine education, distribution and sales. It is also used by members of the baking, brewing and biofuels industries. I am currently writing a book "Wine Microbiology and Fermentation Management" that will summarize my over 30 years of research in this field. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
Saccharomyces cerevisiae is a budding yeast central to many food production processes. This organism is responsible for beverage fermentations yielding beer and wine, and for bread production and is also used in the synthesis of biofuels. In addition, it is used directly, or following fractionation, as an adjuvant in numerous foods. In this capacity it serves as a flavoring agent or to boost the nutritional value of the food itself. All of these processes are batch processes, and involve growing the yeast on a sugar substrate. A common problem in these production processes is the arrest of sugar utilization by the yeast population. Problems with substrate utilization result in a lower biomass yield and a less efficient process, and are costly to correct. Arrest of sugar utilization is generally caused by abiotic or biotic stress to the yeast and is manifest by the degradation of sugar transporters. The focus of my research program is to understand transporter regulation, the impact of stress on transporter activity and turnover, and to define more accurate methods of detection of stresses impacting overall fermentation performance. Recently we have discovered that bacteria in the yeast ecosystem can induce a heritable prion state that modifies yeast sugar metabolism. The role of this prion in yeast survival and the mechanisms of prion induction are being investigated. Studies in my laboratory and elsewhere have underscored the importance of yeast stress as a cause of arrest of fermentation in wine production. A clear picture has emerged of the factors most likely to cause stress: nitrogen limitation, micronutrient limitation, temperature shock, ethanol intolerance, presence of inhibitors, microbial competition. Some of these factors are interacting. For example, strains are more tolerant of high ethanol concentrations at moderate temperatures, but as temperature becomes elevated ethanol tolerance is decreased. The imposition of stress often leads also to the formation of off-characters or negatively perceived food or beverage attributes in addition to the arrest of sugar utilization. Some of these problems can be addressed by the appropriate selection of strains and employment of sound fermentation management practices. Our early work lead to the discovery of the family of hexose transporters in yeast and of the mechanisms by which these genes are regulated. This information has provided the foundation for understanding why and how fermentations arrest. Since arrest of fermentation is an adaptive response to the presence of stress in the environment, it is difficult to reverse once it has occurred short of restoring the yeast to fully permissive growth conditions. More recently our work has focused on the "difficult to ferment juices". These are vineyard lots that chronically display difficulties in the fermentation regardless of the yeast strain used or supplemental nutrition. We have shown that these fermentations fall into two categories those with severe nutrient depletion of the vine and those with the persistence of bacteria. As noted above, we have been exploring the impact of bacteria on modification of yeast metabolic behavior via the induction of a prion state or states. Our ultimate goal is the identification of native strains or genetic modifications of existing commercial strains with enhanced stress tolerance and little to no off-character production that will then be able to be used in high risk production situations. The specific objectives for the current terminating grant period were: 1. Determination of the role of the [GAR+] prion in arrest of commercial wine fermentations 2. Analysis of the spectrum of microorganisms capable of induction the [GAR+] prion 3. Identification of the inducer molecules 4. Elucidating the role of [GAR+] prion establishment in yeast biology and environmental survival This grant is being terminated early due to my retirement and loss of laboratory space. However in the 15 months of this current grant objectives 1-3 have been completed and significant progress made on objective 4. We have confirmed the role of the prion in fermentation arrest in actual fermentations in several ways, First by identifying microbes from arrested commercial fermentations that could induce the prion and , second, simultaneously demonstrating that yeast isolated from these fermentations were in the prion state. Third, we reconstructed these arrested fermentations by placing the bacteria in juice in the presence of non-prion induced yeast and were able to both arrest the fermentation and show that the yeast had induced the prion. This confirms the role of the prion in slow and arrested commercial fermentations. We have expanded the list of inducing organisms focusing on L. kunkeei, a bee probiotic. We have shown that many but not all native bee isolates of this organism can induce the prion and arrest fermentation and have shown the accidental crushing of honey bees during grape processing can be a source of this microbe. We have also shown that this microbe alone cannot arrest fermentation due to sulfur dioxide sensitivity and the removal of this compound by grape acetic acid bacteria enables arrest of yeast metabolism. Finally, we have confirmed that an inducer of the prion is acetic acid. Further we have shown that the proton stress due to medium acidity is likely the inducer of the restructuring of yeast metabolism to prevent acidification of the cytoplasm. The fact that this restructuring is inherited by the progeny cells and not recreated de novo each generation defines a new paradigm in yeast physiology.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Walker, G. A., Hjelmeland, A, Bokulich, N. A., Mills D. A., Ebeler, S. E. and Bisson, L. F. 2016. Impact of the [GAR+] prion on fermentation and bacterial community composition with Saccharomyces cerevisiae UCD932. Am. J. Enol. Vitic. 67:296-307
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Bisson, L. F. 2016. Yeast hybrids in winemaking. Catalyst Disc. Pract. doi: 10.5344/catalyst.2016.16001.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Bisson, L. F. Walker, G., Ramakrishnan, V., Luo, Y., Fan, Q., Wiemer, E., Luong, P., Ogawa, M. and Joseph L. 2016. The two faces of Lactobacillus kunkeei: wine spoilage agent and bee probiotic. Catalyst Disc. Pract., doi: 10.5344/catalyst.2016.16002.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Ramakrishnan, V., Walker, G. A., Fan, Q., Ogawa. M., Luo, Y., Luong, P., Joseph, C. M. L. and Bisson, L. F. 2016. Inter-Kingdom Modification of Metabolic Behavior: [GAR+] Prion induction in Saccharomyces cerevisiae mediated by wine ecosystem bacteria. Front. Ecol. Evol. doi: 10.3389/fevo.2016.00137.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Joseph, C. M. L., Albino, E. and Bisson, L. F. 2016. Creation and use of a Brettanomyces aroma wheel.Catalyst Disc. Pract. doi: 10.5344/catalyst.2016.16003.
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Sun, Y., Qin, Y., Pei, Y. , Wang, G. Joseph, C. M. K., Linda F. Bisson, L.F. and Liu, Y. 2017. Evaluation of Chinese Saccharomyces cerevisiae wine strains from different geographical origins. Am. J. Enol. Vitic. 68:73-80
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Domizio, P., House, J. F., Jospeh, C. M. L., Bisson, L. and Bamforth, C. W. 2016. Lachancea thermotolerans as an alternative yeast for the production of beer. J. Inst. Brew. DOI 10.1002/jib.362
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
P. Domizio, P., Liu, Y., Bisson, L.F. and. Barile, D. 2017. Cell wall polysaccharides released during the alcoholic fermentation by Schizosaccharomyces pombe and S. japonicus: quantification and characterization. Food Microbiol. 61:136-149.
- Type:
Book Chapters
Status:
Published
Year Published:
2016
Citation:
Bisson, L. F., Fan,,Q., and Walker, G. A. 2016. Sugar and glycerol transport in Saccharomyces cerevisiae. Chapter 6 In, Yeast Membrane Transport, Ramos, J., Sychrov�, H and Kschischo, M. (eds). Adv Exper Med Biol 892 doi: 10.1007/978-3-319-25304-6_6.
- Type:
Book Chapters
Status:
Published
Year Published:
2017
Citation:
Bisson, L. F., Joseph, C. M. L. and Domizio, P. 2017. Part 1: Diversity of Microbes. Yeasts Chapter 3, in H, Konig, G. Unden, J. Frohlich (eds) Biology of Microorganisms on Grapes, in Must and in Wine, 2nd Edition, Springer, Cham, Switzerland
- Type:
Journal Articles
Status:
Submitted
Year Published:
2017
Citation:
Walker, G. A., Henderson, C. M., Domizio P., Luong, P., Block, D. E., and Bisson, L. F. 2017. Downshifting yeast dominance: Cell physiology and phospholipid composition are fundamentally altered with establishment of the [GAR+] prion in Saccharomyces cerevisiae, submitted
- Type:
Journal Articles
Status:
Submitted
Year Published:
2017
Citation:
Moreno-Garc�a, J., Garc�a-Martinez, T., Moreno, J., Mauricio, J. C., Ogawa, M., Luong, P. and Bisson, L. F. 2017. Impact of yeast flocculation and biofilm formation on yeast-fungus co-adhesion in a novel immobilization system, submitted
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