Source: UTAH STATE UNIVERSITY submitted to NRP
UNDERSTANDING CONTROLS ON SOIL MICROBIAL NITROGEN USE EFFICIENCY IN AGROECOSYSTEMS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1010928
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Sep 12, 2016
Project End Date
Jun 30, 2021
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
UTAH STATE UNIVERSITY
(N/A)
LOGAN,UT 84322
Performing Department
Biology
Non Technical Summary
Promoting ecosystem nitrogen (N) retention is important for land managers and farmers, as nitrogen losses (via denitrification or leaching) contaminate surrounding natural systems, and represent an expensive waste of fertilizer. Plant and microbial nitrogen use efficiencies (NUE) play a major role in determining agroecosystem N retention. Although plant NUE has been well studied, very little is known about the NUE of soil microorganisms. The proposed study will be the first to quantify soil microbial NUE in relation to agricultural land use (e.g. fertilizer type and quantity). The results of these experiments will provide basic information about ecological controls on soil N cycling, and directly inform management decisions made by land owners.
Animal Health Component
(N/A)
Research Effort Categories
Basic
100%
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
10201101070100%
Knowledge Area
102 - Soil, Plant, Water, Nutrient Relationships;

Subject Of Investigation
0110 - Soil;

Field Of Science
1070 - Ecology;
Goals / Objectives
Soil fertility and agricultural productivity are strongly influenced by microbial metabolism. The balance between nitrogen immobilization and mineralization by decomposer microorganisms regulates N availability to plants. Therefore, nitrogen use efficiency (NUE), or the fraction of metabolized N that is retained in the microbial biomass vs. mineralized, is an important control on rates of plant N uptake and growth. Moreover, because the soil microbial biomass has such a high turnover rate in comparison with plants, microbial NUE may be a major determinant of N cycling rates at the ecosystem scale. To date, there have been very few empirical measurements of NUE, and therefore ecosystem models assume that microbial nutrient use efficienies are inflexible. However, emerging evidence suggests that microbial communities can regulate NUE in relation to varied resource availability.Due to high rates of fertilizer application, agroecosystems are often characterized by open or 'leaky' nitrogen cycles, with multiple deleterious consequences for the agricultural systems themselves and surrounding unmanaged ecosystems. N saturation causes soil acidification, fertilizer runoff and subsequent river and lake eutrophication, and generation of acid rain via NOx emissions. To enhance the ecological sustainability of agricultural and managed ecosystems, it is desirable to reduce ecosystem N losses and promote more closed, conservative N cycles. However, it is not known how common management practices, such as tilling and fertilization, affect microbial NUE and ecosystem N retention. Therefore, this proposal will address the effects of management practices on microbial community carbon and nitrogen use efficiencies. The proposed experiments will be framed to target two major research objectives:Objective 1: Determine whether microbial biomass C:N, CUE, and NUE vary among soils with different management regimes (e.g. fertilization, tilling).Objective 2: Investigate whether prior management regime influences soil responses to subsequent N addition.Two complimentary experiments will be leveraged to target the research objectives. In Experiment 1, soils will be sampled from experimental farm plots with similar soil and plant community characteristics, but different histories of land management. Isotopic techniques will be used to quantify microbial CUE and NUE in relation to biomass stoichiometry and C and N mineralization rates. In Experiment 2, soils of varying C:N ratios will be amended with N to create a gradient of substrate stoichiometry, and microbial biomass C:N and nutrient mineralization rates will be determined. The results of these two experiments (anticipated by summer 2018) will help inform the design of a larger field-based experiment aimed at quantifying controls on NUE across a broad range of agroecosystems.
Project Methods
This project will leverage new biogeochemical methods (e.g. isotope labelling methods for determination of gross amino acid consumption and gross N mineralization) in combination with standard protocols for the quantification of microbial biomass and soil carbon and nitrogen pools. A biogeochemical equilibrium model will also be developed to help interpret and extend the findings of the field experiments.

Progress 09/12/16 to 06/30/21

Outputs
Target Audience: Nothing Reported Changes/Problems:Bonnie Waring is not at Utah State University as of May 31, 2020. Bonnie did not complete the FINAL report for this project. See prior reports for accomplishments. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? Bonnie Waring is not at Utah State University as of May 31, 2020. Bonnie did not complete the FINAL report for this project. See prior reports for accomplishments.

Publications


    Progress 10/01/19 to 09/30/20

    Outputs
    Target Audience: Nothing Reported Changes/Problems:Bonnie Waring is not at USU as of May 31, 2020. Bonnie did not complete the annual report for this project. See prior reports for accomplishments. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

    Impacts
    What was accomplished under these goals? Bonnie Waring is not at USU as of May 31, 2020. Bonnie did not complete the annual report for this project. See prior reports for accomplishments.

    Publications


      Progress 10/01/18 to 09/30/19

      Outputs
      Target Audience:Biogeochemists, microbial ecologists, ecosystem ecologists Changes/Problems:To capture sufficiently broad gradients of the soil properties that are expected to impact responses to fertilization (organic matter content, mineralogy, initial pH), we will be sampling soils from some unmanaged ecosystems (including forest and tundra). However, our experiments will still provide fundamental information about carbon-nitrogen interactions in soil that have direct applicability to the management of fertilization regimes in agroecosystems. What opportunities for training and professional development has the project provided?I hired a PhD student, Savannah Adkins, who will be carrying out field and laboratory experiments associated with the NSF grant and UTA-1300. She will be assisted by undergraduate researchers Preston Christensen and Zach Anthony, who have previously worked on this project. How have the results been disseminated to communities of interest?It is anticipated that this work will result in several peer-reviewed manuscripts and conference presentations. What do you plan to do during the next reporting period to accomplish the goals?We will quantify three important organic matter pools (microbial biomass, particulate organic matter, mineral-associated organic matter) and their responses to N fertilization and soil acidification in two contexts: - long term N fertilization experiments - short-term laboratory incubations with soil microcosms Comparing responses in situ vs. in the lab will shed light on how plant responses over the longer term (e.g. changes in tissue nutrient content or productivity) mediate microbial responses to N. As part of this work we will measure NUE, CUE, and microbial extracellular enzyme activity in all treatments.

      Impacts
      What was accomplished under these goals? This project formed the basis for a grant funded by the NSF Macrosystems Biology program to examine N effects on microbial physiology and soil C cycling. The grant begins 1/1/20. The objectives are to examine how N fertilization (and associated soil acidification) affect movement of carbon through three organic matter pools with different residence times: microbial biomass, particulate organic matter, and mineral-associated organic matter.

      Publications


        Progress 10/01/17 to 09/30/18

        Outputs
        Target Audience:The experiments described here address basic unresolved questions about controls on the soil nitrogen cycle, and the data will be of great interest to ecosystem ecologists, soil microbiologists, and biogeochemists. However, these data can also directly inform land management policy and practice, and will be useful to farmers and other land managers in the state of Utah and throughout the continental U.S. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Two undergraduate students (Zach Anthony and Lizzy Lasley) and a postdoctoral research associate (Kenny Smith) conducted research related to this project. How have the results been disseminated to communities of interest?Zach and Lizzy presented their work at the USU Biology Undergraduate Research Symposium What do you plan to do during the next reporting period to accomplish the goals?Our goal for the coming year is to perfect the isotopic methods necessary to quantify microbial growth efficiency. Since the compost/legume cover crop treatments did not establish an N gradient sufficient to induce changes in microbial community composition, we will also identify steeper gradients of soil N availability in agrosystems that might be leveraged to conduct our planned incubation experiment.

        Impacts
        What was accomplished under these goals? The goal of this research is to address the effects of agricultural management practices on microbial community carbon and nitrogen use efficiencies, thereby gaining a better understanding of ecosystem nitrogen losses. To do so, we will determine whether microbial biomass, community composition, and nutrient use efficiencies vary among different management regimes (e.g. fertilization, cover crops). This year, we focused on two research goals critical to the implementation of the project: 1) We continued to develop isotopic methods for quantifying microbial carbon use efficiency and nitrogen use efficiency. Our prior measurements of gross N immobilization were not sufficiently accurate to quantify NUE. Therefore we are testing an alternative approach: measuring overall microbial growth efficiency by quantifying incorporation of a labeled substrate (glucose) into the microbial biomass over a short period of time. 2) We took advantage of an established UAES project at Blue Creek to explore how variation in soil N inputs affects fungal biomass and community composition. This is highly relevant to the work described here because shifts in microbial community composition are expected be a primary mechanism by which past N input history shapes microbial processing and retention of N. Unexpectedly, however, additions of compost and planting of leguminous cover crops (i.e. enhanced organic and inorganic N inputs) did not affect the identity or relative abundance of the microbial species present in soil. This finding will influence the design of our planned laboratory microcosm experiments (see below).

        Publications


          Progress 10/01/16 to 09/30/17

          Outputs
          Target Audience:The experiments described here address basic unresolved questions about controls on the soil nitrogen cycle, and the data will be of great interest to ecosystem ecologists, soil microbiologists, and biogeochemists. However, these data can also directly inform land management policy and practice, and will be useful to farmers and other land managers in the state of Utah and throughout the continental U.S. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?USU undergraduate Preston Christensen received training in field and laboratory techniques to participate in this project. How have the results been disseminated to communities of interest?These preliminary results were presented by USU undergraduate Preston Christensen at the USU Biology Undergraduate Research Symposium. What do you plan to do during the next reporting period to accomplish the goals?As part of a separate UAES project, the Waring lab established replicated plots of similar agricultural management treatments (legume cover crops, non-legume cover crops, and compost addition) at Blue Creek Experimental Farm in April 2017. With our preliminary data and optimized protocols in-hand, we will sample these plots in April 2018 to provide a definitive test of our hypothesis: that decreasing microbial nitrogen use efficiency is associated with greater ecosystem N loss.

          Impacts
          What was accomplished under these goals? The goal of this research is to address the effects of agricultural management practices on microbial community carbon and nitrogen use efficiencies, thereby gaining a better understanding of ecosystem nitrogen losses. To do so, we will determine whether microbial biomass, community composition, and nutrient use efficiencies vary among different management regimes (e.g. fertilization, cover crops). Over the past year, a team of undergraduates analyzed nitrogen cycling across three agricultural treatments (N-fixing [legume] cover crops, non-legume cover crops, and compost amendments) that were expected to generate a gradient of N availability. This preliminary work was conducted at the USU's Greenville Experimental Farm. As expected, the dominant chemical form of N and the fungal:bacterial ratio (an important metric of microbial community structure) varied according to management practice. Interestingly, the legume (N-fixing) cover crop treatment exhibited highest rates of gross N mineralization but the lowest levels of plant-available N, suggesting strong microbial competition for this resource. These preliminary data also provided us the opportunity to test and optimize isotopic methods for measuring microbial nitrogen use efficiency. Milestones: 1) Tested protocols and obtained promising preliminary data 2) Trained undergraduates in field, laboratory, and presentation techniques 3) Identified/established field sites that will support the next phase of the experiment

          Publications


            Progress 09/12/16 to 09/30/16

            Outputs
            Target Audience:Target Audience The experiments described here address basic unresolved questions about controls on the soil nitrogen cycle, and the data will be of great interest to ecosystem ecologists, soil microbiologists, and biogeochemists. However, these data can also directly inform land management policy and practice, and will be useful to farmers and other land managers in the state of Utah and throughout the continental U.S. Changes/Problems:Changes/Problems I did not receive access to a usable lab space until November 9, 2016. What opportunities for training and professional development has the project provided?Opportunities I am in the process of hiring a post-doctoral researcher and have recruited four undergraduates to work in my lab. These individuals will start methods validation and sampling in the spring 2017 semester. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?Plan of Work Because I did not have a usable lab space until yesterday (see below), I have not been able to start testing biogeochemical methods for this project as planned. However, I have ordered all major lab equipment and will begin methods validation as soon as possible. This will keep me on track for my stated benchmark of beginning the incubation experiments in early fall 2017.

            Impacts
            What was accomplished under these goals? Accomplishments After an extensive review of candidate sites, I have identified an appropriate sampling site at Blue Creek Experimental Farm. Earl Creech and Jennifer Reeve of the Plant Soils Climate department have been maintaining a fertilizer trial there involving both organic compost and inorganic N amendments. This is an ideal system to test the hypotheses described in the proposal. I anticipate sampling will begin in early Spring 2017.

            Publications