Source: UNIV OF WISCONSIN submitted to
MANAGING PLANT MICROBE INTERACTIONS IN SOIL TO PROMOTE SUSTAINABLE AGRICULTURE
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
1009543
Grant No.
(N/A)
Project No.
WIS01929
Proposal No.
(N/A)
Multistate No.
W-3147
Program Code
(N/A)
Project Start Date
Jul 1, 2016
Project End Date
Sep 30, 2018
Grant Year
(N/A)
Project Director
Hickey, W.
Recipient Organization
UNIV OF WISCONSIN
21 N PARK ST STE 6401
MADISON,WI 53715-1218
Performing Department
Soil Science
Non Technical Summary
Bacteria of the genus Acidovorax are pathogens of plants important in food production and bioenergy development, as well as in the ornamental and turf industries. While Acidovorax-related diseases have a broad impact, relatively little is known about the biology of phytopathogenic Acidovorax, and mechanisms underlying virulence are unestablished. Recently, the Principle Investigator identified a previously unrecognized characteristic common to phytopathogenic Acidovorax species, namely that all possess a unique surface layer protein. This is significant, as the surface layer (S-layer) would be the predominant exterior thus be important in virulence-related extracellular interactions. Furthermore, the S-layer enables development of novel structures discovered by the Principle Investigator, called nanopods, which are S-layer extensions that contain outer membrane vesicles. Outer membrane vesicles (OMV) have been studied extensively in bacterial human pathogens and play a key role in disease development by transmitting virulence determinants. For phytopathogens such as Pseudomonas syringae and Xanthomonas campestris, OMV are also now gaining recognition as having similarly important roles in disease. For phytopathogenic Acidovorax, the role of OMV in virulence has not been assessed. This project will examine the role of these newly discovered structures (the S-layer and nanopods) in the biology and virulence of Acidovorax. The findings could provide new insights to mechansims important in the Acidovorax-plant interactions, which might facilitate development of strategies to mitigate crop damage caused by this important group of pathogens.Molecular genetics approaches will be used in laboratory studies to manipulate the capacity of Acidovorax to produce specific proteins. The effect that these manipulations have upon the ability of mutant Acidovorax to cause disease will then be tested in the laboratory by injecting bacterial cells into watermelon fruit. Results will be compared to watermelon injected with natural Acidovorax, which causes severe decomposition of the fruit in a peroid of about three weeks. If the mutations affect virulence, disease symptoms should be either absent or significantly reduced compared to those observed with natural Acidovorax. Findings from the studies will be communicated in research journals, conferences and through social media. The ultimate goal is to determine if the S-layer and/or OMV play roles in the virulence of Acidovorax. If results from these experiments confirm such functions, it will have the immediate effect of opening a new dimension to the research field about bacterial plant pathogens. A longer term impact could be the develpment of new strategies to prevent or remediate outbreakes of plant diseases associated with Acidovorax or related bacteria.
Animal Health Component
0%
Research Effort Categories
Basic
100%
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
1020199104034%
2120199104033%
2150199104033%
Goals / Objectives
To identify and characterize new biological agents, microbial community structure and function, naturally suppressive soils, cultural practices, and organic amendments that provide management of diseases caused by soilborne plant pathogens. To understand how microbial populations and microbial gene expression are regulated by the biological (plants and microbes) and physical environment and how they influence disease. Provide outreach, education, extension and technology transfer to our clients and stakeholders- growers, biocontrol industry, graduate and undergraduate students, K-12 students and other scientists.
Project Methods
The project's objectives are:1) Develop mutants of phytopathogenic Acidovorax species lacking the S-layer and assess their virulence.2) Examine A. avenuae subsp. citrulli for nanopod production in plant tissue.3) Create mutants of A. avenuae subsp. citrulli lacking selected OMV-associated proteins and assess their virulence.4) Determine expression and location in plant issues of OMV-associated proteins produced by A. avenuae subsp. citrulli.The proposed studies will test two hypotheses:1) Nanopods and S-layer mediate intercellular associations that are key to Acidovorax virulence (addressed in Objectives 1 and 2).2) OMV Deployed within Acidovorax nanopods harbor protein virulence factors that are translocated to plant cells (addressed in Objectives 3 and 4).We will use molecular genetics techniques to develop mutants of phytopathogenic Acidovorax species lacking key genes and assess their ability to cause disease with watermelons. Virulence will be tested by inoculating fruit of watermelon plants (Citrullus lanatus) with mutant and non-mutants cells. When the disease is observed, microscopy will be used to visualize interactions of bacterial cells with those of the host plant. Results will be evaluated across scales ranging from whole plants to biomolecules. At the whole plant level, disease is assessed by decomposition of tissues. At the cellular level, bacteria-plant interactions will be evaluated by using light microscopy and electron microscopy. At the molecular scale, results are assessed by measuring changes in production of targeted proteins. By using controlled experiments, the results can be interpreted collectively. Thus, particular proteins can be linked to physical associations between plant cells and bacteria, which ultimately result in plant disease.The efforts to cause a change of knowledge will largely follow the outputs, namely publications in research journals, presentations at scientific conferences, presentations at annual meetings of the Regional Multistate, and information dissemination via websites and social media. Research papers will be evaluted for impact on academic audiences by metrics available on journal websites (citations, views, downloads). Impacts of oral presentations will be evaluated by interactions with audiences during and after the presentations.

Progress 07/01/16 to 09/30/18

Outputs
Target Audience: Nothing Reported Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?A graduate student was trained on this project. The student has become proficient in the application of sophisticated molecular techniques for analyses of bacterial metabolic processes, and can now apply these independently. How have the results been disseminated to communities of interest?Our results were disseminated in a journal-Frontiers in Microbiology. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? For goal 1. Identified and characterized new biological agents, microbial community structure and function, naturally suppressive soils, cultural practices, and organic amendments that provide management of diseases caused by soilborne plant pathogens. The project focuses on Acidovorax citrulli, a bacterium that causes blotch disease of melons and other cucurbits. We examined the potential role of surface layer protein (SLP) as a virulence determinant, which is a cellular characteristic that enables the organism to cause the disease. SLP are a layer of protein that cover the entire exterior of a bacterial cell. These molecules thus present the primary interface between a bacterium and its environment. The initial interaction between a pathogen and its host are important in the subsequent development of disease, which SLP would mediate. The role of SLP as virulence factors is well-established for human pathogens like Clostridium difficile, but little is known about SLP as virulence factors in plant pathogens. Goal 2. To understand how microbial populations and microbial gene expression are regulated by the biological (plants and microbes) and physical environment and how they influence disease. A. citrulli differs from other non-pathogenic bacteria that produce NpdA in that its genome contains a second gene encoding a slightly different version of npdA (termed npdA2), but production of this protein by cultures grown in lab culture has not been detected. We are examining the possibility that the two versions of NpdA are produced under different conditions. Our hypothesis is that A. citrulli produces the npdA2 when it is actually living in the melon and, if so, NpdA2 would be the molecule potentially important in mediating contact with the host, not NpdA. A similar situation has beendocumented for the human pathogen Clostridium difficile, which produces a different version of SLP in the human gut, then it dies when grown in a lab culture. To address this question, we began developing an RT-PCR assay to examine variation in mRNA abundance of npdA and npdA2 in cells grown in lab cultures and in those recovered from inoculated watermelons. This successfully validated an RTPCR protocol that is consistent with MIQE guidelines, and is now analyzing gene expression of A. citrulli from infected melon tissue.

Publications

  • Type: Journal Articles Status: Published Year Published: 2018 Citation: Obi Chioma C., Vayla Shivangi, de Gannes Vidya, Berres Mark E., Walker Jason, Pavelec Derek, Hyman Joshua, Hickey William J. 2018. The Integrative Conjugative Element clc (ICEclc) of Pseudomonas aeruginosa JB2. Frontiers in Microbiology 9:1532.


Progress 10/01/16 to 09/30/17

Outputs
Target Audience:The target audiences are producers. The scientific community interested in diseases of horticultural crops, particularly melons and cucurbits. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project has supported a graduate student who is working on an M.S. degree in Microbiology. She is being trained by the PI, and is gaining the benefits of his more than 30 years of experience in reseach. The student has become proficient in the application of sophisticated molecular techniques for analyses of bacterial metabolic processes, and can now apply these independently. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?We will apply the techniques to analysis of bacteria that are living within the plant tissues. Data from these experiments will provide insight into the biology of the organism that is relevant to the disease process. These findings will be communicated to the scientific community at conferences. For outreach to people who grow crops potentially affected by the pathogen, we will present out work at extension events held throughout the state. We will also present our work at campus events that target K-12 students.

Impacts
What was accomplished under these goals? The initial phase of this project has been directed to Goals 1& 2 of Multistate Project W3147. The project activities are summarized below by the goal that was addressed. Goal 1. To identify and characterize new biological agents, microbial community structure and function, naturally suppressive soils, cultural practices, and organic amendments that provide management of diseases caused by soilborne plant pathogens. The project focuses on Acidovorax citrulli, a bacterium that causes blotch disease of melons and other cucurbits. In the initial phase of this project, we are examining the potential role of surface layer protein (SLP) as a virulence determinant, which is a cellular characteristic that enables the organism to cause the disease. SLP are a layer of protein that cover the entire exterior of a bacterial cell. These molecules thus present the primary interface between a bacterium and its environment. The initial interaction between a pathogen and its host are important in the subsequent development of disease, which SLP would mediate. The role of SLP as virulence factors is well-established for human pathogens like Clostridium difficile, but little is known about SLP as virulence factors in plant pathogens. Prior work in the PI's lab demonstrated A. citrulli produced an SLP (termed NpdA) that the PI has studied in other Betaproteobacteria (bacteria related toA. citrulli). In our initial work, one of the goals was to determine how the presence or absence of NpdA in A. citrulli affects the occurrence or severity of the blotch disease. To do so, was deleted the gene encoding NpdA from A. citrulli. The desired mutant is now being tested with watermelon plants and watermelon fruit to assess impacts on virulence. Goal 2. To understand how microbial populations and microbial gene expression are regulated by the biological (plants and microbes) and physical environment and how they influence disease. A. citrulli differs from other non-pathogenic bacteria that produce NpdA in that its genome contains a second gene encoding a slightly different version of npdA (termed npdA2), but production of this protein by cultures grown in lab culture has not been detected. We are examining the possibility that the two versions of NpdA are produced under different conditions. Our hypothesis is that A. citrulli produces the npdA2 when it is actually living in the melon and, if so, NpdA2 would be the molecule potentially important in mediating contact with the host, not NpdA. A similar situation has beendocumented for the human pathogen Clostridium difficile, which produces a different version of SLP in the human gut, than it dies when grown in a lab culture. To address this question, we began developing an RT-PCR assay to examine variation in mRNA abundance of npdA and npdA2 in cells grown in lab cultures and in those recovered from inoculated watermelons. This successfully validated an RT-PCR protocol that is consistent with MIQE guidelines, and is now analyzing gene expression of A. citrulli from infected melon tissue.

Publications