Source: UNIVERSITY OF ARKANSAS submitted to NRP
UNDERSTANDING NATURAL RESOURCE PATTERNS AND HUMAN-ENVIRONMENTAL HEALTH IN A SPATIAL CONTEXT
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1009317
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Apr 13, 2016
Project End Date
Mar 31, 2021
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
UNIVERSITY OF ARKANSAS
(N/A)
FAYETTEVILLE,AR 72703
Performing Department
Forestry And Natural Resources
Non Technical Summary
The natural resources in the state of Arkansas is facing critical challenges resulted from warming climate and intensified human activities. It is important for us to document such changes, such as how many lands have been converted from wetlands to croplands, and from forests to human settlements. Earth observation techniques offer us this opportunity to determine the amount and distribution of natural resources at high accuracy and fine resolution, not only for the contemporary time, but also for the old decades. The main purpose of this project is to quantify the long-term records of natural resource dynamics, as well as the healthy conditions of forest ecosystems disturbed by beetles via an integration of geospatial techniques, ecological niche modeling and landscape ecology analysis. This type of information can be used by decision makers to evaluate the effectiveness of their programs, such as the Conservation Reserve Program, and can be applied in other scientific domains, such as the estimation of total carbon emissions caused by the loss of forests, and biodiversity decline due to the degradation of wetlands. In the meantime, we realize that changes in natural resources could bring catastrophic consequences to human health, which can get intensified with the climate change. But questions like how will the changes happen, to which degree will the changes affects the human health system, will adverse and beneficial effects co-exist, and which effect will play a dominant role, remain uncertain. Thus, another goal of this project is to elucidate the relationship between climate change, natural environment and human health, which will be beneficial to plan adaptation and mitigation strategies ahead.
Animal Health Component
70%
Research Effort Categories
Basic
20%
Applied
70%
Developmental
10%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
1223110206030%
6050120206040%
7230430206030%
Goals / Objectives
Arkansas is an area rich in natural resources, but is also a vulnerable region under the intensified pressure from human activities and climate change. For instance, forest resources, which occupy a large portion of this natural configuration, experiencing dramatic changes over the past decades. During the 1980s, 5.2 million acres of timberlands in the Lower Mississippi Alluvia Valley were lost to agriculture and development due to large-scale land clearing and farming. Since the 1980s, conservation incentive programs, such as the Conservation Reserve Program, have been offered to farmers to convert or revert environmentally sensitive land from agricultural production to forests, and forest area has been observed gradual and noticeable increases. Besides human impacts, insect disturbances is another factor that is significantly altering forest ecosystem's composition, structure and function. For example, the southern pine beetle (SPB) is the most destructive insect pest of pine forests in the South, which had killed $493 million total value of trees from 1991 to 1996. The effects of insect infestation range from altered surface fuel and wildfire hazards, changed vegetative composition, converted live carbon sinks to dead and slowly decaying carbon sources, impacted nutrient cycling and water quality, modified local surface energy balance and changes in the regional climate. By infesting and killing stressed trees, insects could result in complex dynamic patterns of dead trees, and the subsequent recovery will also be highly spatially and temporally variable.Changes in geographic ranges and conditions of natural resources are of critical importance to biodiversity conservation, environment protection, bioenergy development, water and food security, and carbon sequestration. Thus, accurate, timely and spatially explicit retrospective review on the landscape patterns, and understanding the biophysical and anthropogenic drivers of the changes are critically important to natural resource managers, decision makers and stakeholders. However, given its importance, there is a substantial lack of information with regard to natural resource distribution and condition changes in Arkansas. The value of geospatial techniques in the studies of natural resources has long been recognized, and it is a powerful tool to produce long-term, fine-resolution, and frequently updated data that can depict the landscape dynamics over time.Changes in natural resources and environment, such as deforestation and biodiversity loss, will not only bring catastrophic consequences to the material and energy cycle of ecosystems, but will also cause detrimental health impacts on humans. For instance, the decreasing tree cover and biomass could convert many forest ecosystems from a carbon sink to a carbon source, and in turn cause heavier pollution, toxins and more weather extremes. The accompanied urbanization and agricultural intensification with deforestation could reduce the suitable habitat for forest wildlife, expel them into human crowed zones, raise the chances of disease transmission from wild pathogen hosts to humans, and cause genetic mutation. Meanwhile, climate change is accelerating the process of environment deterioration, and pose huge threats to human health. For instance, the rising number of large forest fires as witnessed over the past decades, are indicated to be affected by the variation in climate factors. Emissions from wildfires, such as particulate matter and carbon monoxide, could have significant impacts on local air quality, and consequently affect human's respiratory system. Thus, a better understanding towards the relationships among natural environment, climate change, and human health is necessary to protect public and environmental health, such as the design of pro-active mitigation and reliable projection of vulnerability, yet it remains unsolved due to the complexity in the multiple component and system interaction in this socioenvironmental issue.The overall goal of this project is to develop theoretical models and novel datasets in GIScience, to monitor the geographic distribution and condition dynamics of natural resources, and to solve the natural resource related health issues. Three specific objectives are listed as following:Long term monitoring and spatial-temporal simulation of forest insect disturbance dynamics.Monitoring landscape dynamics and conditions of natural resources in the Mississippi Alluvial Valley of Arkansas.Evaluate relationships among climate change, natural environment and human health.
Project Methods
To achieve the first objective of this project, I plan to use a forest-growth trend analysis methodology that integrates temporal trajectories in remotely sensed images and decision tree techniques to generate annual forest disturbance maps for mountain pine beetle, southern pine beetle, and red oak borer over a period of one decade. The classification accuracy will be evaluated by field survey, FIA plots, and visual interpreted samples from high-resolution images. Future infestation scenarios will be simulated using a cellular automata (CA) model. The CA model will be developed upon the time-series Landsat imagery derived forest disturbance map. To test whether the CA model is not confined to specific sites and can be widely applicable, three similar-sized study sites will be chosen across the three different forest regions. Training samples for CA modeling will be extracted through a stratified random sampling scheme, and be used to train the key parameters in CA model including transition rules, neighborhood, constraints, and stochastic perturbation. A stepwise comparison will be employed to conduct the sensitivity analysis of the operational components in the proposed Insect-CA model. To assess the performance of the CA models, I will compare the simulation results with the observed maps via two ways: pixel-based accuracy, and pattern-based spatial metrics. Overall accuracy will be used as an indicator for pixel-based assessment.The second objective of this project will be completed via a multi-stage classification workflow. First, 1-m resolution NAIP images will be conducted with object-based classification. In the segmentation algorithm, three parameters are required: threshold, shape and compactness. Multiple combinations of parameters and certain quantitative measurements will be utilized to select the optimal combination. The purpose of segmentation is to partition the landscape into a group of objects, with each object representing a homogeneous patch of cropland field. Shape metrics, such as perimeter-area ratio, fractal dimension index, will be calculated with FRAGSTATS. At the second stage, Landsat time-series stack will be employed to extract vegetation phenology information, such as the beginning of green-up or dormancy. Those phenological variables can be treated as proxies for the seasonal progress of crops. Since various crop types should possess different growing patterns, a set of optimally selected and calibrated phenological metrics is thus capable of classifying them into distinct categories. Finally, all shape metrics and phonological variables will be used as inputs in the Random Forest classifier to generate multi-year cropland classifications. Random Forest is a machine-learning technique that combines the results of thousands of weak classifiers, such as classification and regression trees, and is often praised for its good overall performance, as well as robustness to noise.The major classification and accuracy assessment tasks will be conducted in the data mining software WEKA. The maps will be evaluated by comparing the results with FIA forest resources assessment reports in 1986 and 2013 at both the county and state level.The third objective of this project will be conducted through an integrated meta-studies analysis and geospatial technique. I will conduct the original research literature search in the mainstream bibliographic databases. Basic literature information and abstract information will be retained for the next step of literature filtering. Firstly, duplicated papers from different bibliographic databases will be removed. Secondly, the literatures will be ranked based on their quality. Peer-reviewed papers with specific findings or conclusions supported by data collection and solid experimental or computational design will be ranked as the highest quality, while literatures in other forms such as review, editorial, commentary, will be ranked lower. Finally, only articles with the focus on human related health issues can be retained. The climate change-natural environment-human health relationship will first be understood using exploratory spatial data analysis. I will further use regression to quantitatively describe the relationship between three terms of interest. In order to show connections among various thematic terms, such as disease types, climate variables, environmental factors, methodology, and spatial-temporal scales, a "climate-environment-disease-method-scale" thematic network that is made up with a set of nodes and edges will be designed. In this web-like illustration network, each node is one thematic term with its size representing how well a node is connected, and the edge thickness indicates the frequency of occurrence of a specific relationship. Based on this network, the connectivity degree between various thematic terms can be visualized and quantified.

Progress 04/13/16 to 03/31/21

Outputs
Target Audience:Natural resource managers, geospatial scientists, and forest health scientists. Changes/Problems:The primary investigator accepted a position at another institution. A search continuesto refill the postion, but was significanly delayed by the COVID-19 situation. What opportunities for training and professional development has the project provided?Multiple undergraduate and graduate students have been involved with this project and have received hands-on training related to remote data colection and image analysis. How have the results been disseminated to communities of interest?Results from this project have been disseminated through professional journal articles, presentations at professional conferences,presentations and discussions at the Arkansas GIS Users Forum, and participation in ArkansasView,a consortium of universities, K-12 schools, and state agenciesthat provides remote sensing educational activities. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The focus of the first two objectivesof this project waslong-term monitoring of landscape dynamics and forest insect disturbance. A workflow that integrated the use of object-based image analysis and machine learning when interpreting very high-resolution satellite imagerywas developed to derive and identify individual tree crowns. Fine-resolution distribution maps ofash that were located in mixed bottomland hardwood forests in Arkansasweregenerated to aid in the evaluation and simulation of emerald ash borer invasions in the state. The methodology provided a solution forparameterizing contemporary forest landscape changes via cost-effective remotely sensed indicators. Additionally, Unmanned Aerial Systems (drones) were used to obtain imagery on three sites for comparing structural complexity of managed lands enrolled in the Wetlands Reserve Program (WRP) with habitat indicators from ground surveys. Techniques were developed for integration of data collected from multispectral-sensors, which recorded both RGB and infrared spectrums, withOBIA (object based image analysis) methods to allow for future analyses and projections of effectiveness of WRP practices.

Publications


    Progress 10/01/18 to 09/30/19

    Outputs
    Target Audience:Natural resource managers, geospatial scientists, and forest health scientists. Changes/Problems:The primary investigator, Dr. Lu Liang, accepted a position at another institution. A search is currently being conducted to refill the position. What opportunities for training and professional development has the project provided?UAS flight training and data collection have provided opportunities for graduate student training and have exposed several undergraduate students to this technology. How have the results been disseminated to communities of interest?A presentation on the methodology being used in the project was delivered at the annual Arkansas GIS Users Forum to 50 geospatial professionals and natural resource managers. What do you plan to do during the next reporting period to accomplish the goals?Once imagery processing is complete using ArcPro and OBIA, models will be developed to assess current, and predict future, conditions of WRP forests to aid land managers.

    Impacts
    What was accomplished under these goals? Unmanned Aerial Systems (drones) were used to obtain imagery on three sites for comparing structural complexity of managed lands enrolled in the Wetlands Reserve Program with habitat indicators from ground surveys. Flights were performed with a fixed wing eBee UAS with multispectral-sensors recording RGB and infrared spectrums. Flight planning software was eMotion, and Pix4D was the software used to mosaic and process the imagery. ArcPro is currently being used to further process the imagery with OBIA (object based image analysis) methods.

    Publications


      Progress 10/01/17 to 09/30/18

      Outputs
      Target Audience:Natural resource managers, geospatial scientists, and forest health scientists. Changes/Problems:The primary investigator, Dr. Lu Liang, accepted a position at another institution. A search is currently being conducted to refill the position. What opportunities for training and professional development has the project provided?UAS flight planning and data collection have provided opportunities for graduate student training and have exposed several undergraduate students to this relatively new technology. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?UAS flights will be performed to collect imagery for data analyses.

      Impacts
      What was accomplished under these goals? Imagery obtain through the use of Unmanned Aerial Systems (drones) is being used to compare structural complexity of managed lands enrolled in the Wetlands Resrve Program with habitat indicators from ground surveys, and to ultimately create map layers to facilitate assessment of WRP sites. Current efforts are being directed towards performing flights and software training and development. Flight maintenance is being performed on botha fixed wing eBee and Albris UASs as well on the payload-sensors. Software training and development is currently being focused on regular usage of the eMotion and Pix4D software for future integration with the OBIA (object based image analysis) methods that will be utilized. Along with equipment maintenance, regular flight planning parameters, protocols, and test flights are being developed in preparation for data collection which is expected to begin later in the spring.

      Publications


        Progress 10/01/16 to 09/30/17

        Outputs
        Target Audience: The primary target audiences included resource managers, geospatial scientists, forest health scientists. Changes/Problems:For Project 1 "long term monitoring and spatial-temporal simulation of forest insect disturbance dynamics", my original study subjects were red oak borer, mountain pine beetle, and southern pine beetle. My priority will need to be shifted to emerald ash borer, as it is the major concern in Arkansas and presents a series threat to Arkansas' ash resources and forest sector. Since the first Arkansas detection in 2014, the emerald ash borer (EAB) is expanding fast and has been confirmed in 17 counties. Its distribution information and early detection technique are undoubtedly more urgently needed. What opportunities for training and professional development has the project provided?I have coordinated two sessions in the "Girls in STEM Leadership Conference" organized by School of Education, UAM in April and November. Approximately 40 girls at 7-8 grades from targeted schools such as Dumas, Hamburg, Monticello, Star City, Dewitt, and Crossett joined my drone session to get excited about geospatial technology. I offered two undergraduate students from "Women of Natural Resources" to work on my station projects and trained them with geospatial techniques. How have the results been disseminated to communities of interest?My research was published in Journal of Sustainable Forestry, Ecological Modeling, Environment International, Remote Sensing, Agricultural & Environmental Letters, Lancet, International Journal of Geographical Information Science through peer-reviewed process. I also made presentations at professional conferences. Through those papers and presentations, my results were disseminated to readers covering a broad spectrum of disciplines including remote sensing, Geographic Information System, forestry, agriculture, and public health. What do you plan to do during the next reporting period to accomplish the goals?The research goal next year is to submit two publications for accomplishing Project 1 and 2. One will be focused on the ash tree remote sensing mapping and the other one will be centered on the development of deep learning capacity in landscape pattern recognition. I will also develop the flying and data processing skills of unmanned aircraft system, to provide more flexible and affordable solutions to remotely sensed data acquisition. I will also submit several external grant proposals to continue my research projects.

        Impacts
        What was accomplished under these goals? For my McIntire-Stennis station Project 1 "long term monitoring and spatial-temporal simulation of forest insect disturbance dynamics", my accomplishment this year can be mainly concluded into two aspects: 1) I have designed a practical and repeatable workflow to derive the Individual tree crowns based on very high-resolution satellite image through the integrated use of object-based image analysis and machine learning techniques. Ash tree distribution map was generated in a mixed bottomland hardwood forest of Arkansas. The outcome includes a fine resolution map showing the distribution of ash resources in a mixed bottomland hardwood forest of Arkansas and the methodology offers the solution of parameterizing contemporary forest landscape changes via cost-effective remotely sensed indicators. The derived mapping results will be served as the basis to be integrated into cellular automata models to simulate future landscape pattern under climate change and forest management scenarios, which is one of the project objectives. For my McIntire-Stennis station project 2 "monitoring landscape dynamics and conditions of natural resources in the Mississippi Alluvial Valley of Arkansas", I have been collaborating with scientists at UAF to explore the opportunity of deep learning and cloud-computing platform in large geospatial data processing and large-scale landscape mapping. Two major efforts were made, with one focused on the algorithm and one on the database. I have developed a new algorithm to identify long-term change trajectories from time series RS data by combining trajectory-based classification with object-based image analysis, which delineates the landscapes into a mosaic of ecologically meaningful spatial entities and depicts the dynamics within each entity as a trajectory in a state variable, to minimize salt and pepper effects in mapping over space and time. I also built a human-annotated image library that is designed specifically for RS image pattern recognition using deep learning technology. For my McIntire-Stennis station project 3 "Evaluate relationships among climate change, natural environment, and human health". I completed the construction of a literature database by compiling all relevant articles from the mainstream bibliographic libraries, which lays the basis in assessing the current progress and identifying research gaps in the three interrelated research fields over various spatio-temporal scales

        Publications

        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Li XC, Lu H, Zhou YY, Hu TY, Liang L. Liu XP, Hu GH, Yu L. (2017) Exploring the performance of spatio-temporal assimilation in an urban cellular automata model. International Journal of Geographical Information Science. Doi:10.1080/13658816.2017.1357821
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Sapkota B, Liang L. A multi-step approach to classify full canopy and leafless trees in bottomland hardwoods using very high resolution image. Journal of Sustainable Forestry. DOI: 10. 1080/10549811.2017.1409637
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Liang L, Li XC, Huang YB, Qin YC, Huang HB. (2017) Integrating remote sensing, GIS and dynamic models for landscape-level simulation of forest insect disturbance. Ecological Modeling. 354:1-10.
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Liang L, Gong P. (2017) Climate change and human infectious diseases: a synthesis of research findings from global and spatio-temporal perspective. Environment International. 103: 99-108.
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Reynolds R, Liang L, Li XC, Dennis J. (2017) Monitoring annual urban changes in a rapidly growing portion of Northwest Arkansas with a 20-year Landsat record. Remote Sensing. 9(1):71.
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Runkle BR, Rigby JR, Reba ML, Anapalli SS, Bhattacharjee J, Krauss KW, Liang L, Locke MA, Novick KA, Sui R, Suvo?arev K. (2017) Delta-Flux: An eddy covariance network for a climate-smart lower Mississippi basin. Agricultural & Environmental Letters. 2(1).
        • Type: Journal Articles Status: Published Year Published: 2017 Citation: Watts N, Ayeb-Kalsson S, Belesova K, &, Liang L, et al., The Lancet Countdown on health and climate change: from 25 years of inaction to a global transformation for public health. Lancet. Accepted.


        Progress 04/13/16 to 09/30/16

        Outputs
        Target Audience:During this reporting year, I have served several groups ofaudiences: 1) I have incorporated one part of my research projects to a undergraduate's practicum project. He also presented his work in a professional conference. 2) I am serving on two graduate students' thesis committee. Both of their thesis are highly relevant to my station project. 3) My research and results have been presented to a wide range of audience, including geospatial professionals, forest ecologists and managers, carbon scientists, farmers, extensionists, high school teachers and government staffs. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?This year, I have two undergraduate students working on my projects and trained them with remote sensing and GIS techniques. This March, I advocated geospatial science with a group of high school students in the Environmental and Spatial Technology (EAST) conference held in Hot Springs, Arkansas. This November, I helped with the EAST initiative to host a 2-day high school student technical training and teacher professional development in SFNR. How have the results been disseminated to communities of interest?This year, I served as a Co-PI to ArkansasView, which is a consortium of universities, K-12 schools, and state agencies within the state of Arkansas. This October, I represented ArkansaView to talk about remote sensing research and educational activities in Arkansas in the Fall Technical Meeting of AmericaView. This is a good opportunity to broadcast our program to the nationwide audience. One first author and one co-authored journal papers have been published. Three first author and one co-authored manuscripts have been submitted and are currently under review. Through those papers, my results can be disseminated to readers covering a broad spectrum of disciplinesincluding remote sensing, forest ecology and management, climate change and health. What do you plan to do during the next reporting period to accomplish the goals?Next year, a major research effort will be made to publish manuscripts that are under review or in submission in peer-reviewed journals. Meanwhile, I will continue to seek out new funding opportunities for projects, such as the Emerald Ash Borer early detection and insect dispersal simulation. The inclusion of some preliminary results will increase the likelihood of successful grant application.

        Impacts
        What was accomplished under these goals? I am actively participating in interdisciplinary and collaborative research to achieve my goals of the station project. My research efforts this year can be mainly concluded into the following fields: 1) landscape-level forest insect dispersal simulation; 2) forest insect disturbance early detection through ground and satellite measurements; 3) assessment of changes in water availability for an improved understanding towards the bird winter movement ecology and natural resource distribution; 4) water regime shifts in bottomland hardwood reservoir. For project 1, I have designed and implemented a grid-based insect-cellular automata model, which is ready to be applied in other types of insect disturbances. For project 2, our algorithm has been tested to be effective in delineate the boundary of individual tree crown. For project 3, study workflows have been designed and pilot studies were conducted in Lonoke, Arkansas. The surface water availability during winter time (Nov-Jan) varies annually and an overall increasing trend has been observed in this region from middle 80th to the present year. For project 4, a pilot study that maps out the distribution changes of rice paddy fields has been conducted in Lonoke, AR over the past five years. The rice paddy acres have decreased from 85,984 acres in year 2010 to 74,966 acres in year 2015. A significant shifting pattern of irrigation practices from contour leveed to zero grade fields has also been observed on a series of aerial images.

        Publications

        • Type: Journal Articles Status: Published Year Published: 2016 Citation: Liang L, Hawbaker T, Zhu ZL, Li XC, Gong P. (2016) Forest Disturbance Interactions and Successional Pathways in the Southern Rocky Mountains. Forest Ecology and Management. 375: 35-45.
        • Type: Journal Articles Status: Published Year Published: 2016 Citation: Gong P, Yu L, Li CC, Wang J, Liang L, Li XC, et al. (2016) A new research paradigm for global land cover mapping. Annals of GIS. DOI:10.1080/19475683.2016.1164247
        • Type: Journal Articles Status: Published Year Published: 2016 Citation: Watts N, Adger N, Ayeb-Karlsson, & Liang L, et al. (2016) The Lancet Countdown: tracking progress on health and climate change. Lancet. DOI: http://dx.doi.org/10.1016/S0140-6736(16)32124-9
        • Type: Journal Articles Status: Under Review Year Published: 2016 Citation: Liang L, Gong P. Global Perspective on Climate Change and Human Infectious Diseases: A Synthesis of Research Findings From Spatio-temporal Perspective. Submitted to Lancet Infectious Disease.
        • Type: Journal Articles Status: Under Review Year Published: 2016 Citation: Liang L, Li XC, Gong P. Integrating Remote Sensing, GIS and Dynamic Models for Landscape-Level Simulation of Forest Insect Disturbance. Ecology Modeling. Under review.
        • Type: Journal Articles Status: Under Review Year Published: 2016 Citation: Reynolds R, Liang L, Li XC, Dennis J. Monitoring annual Urban Growth in Northwest Arkansas with a 20-year Landsat Record. Remote Sensing. Under review