Progress 10/28/15 to 09/30/18
Outputs Target Audience:The audience for the research on Porcine reproductive and respiratory syndrome (PRSS) was targeted through journal articles, publications, conference presentations, workshops, the lay press and individual conversations. The target audience included academic researchers -- particularly agricultural and livestock economists and veterinary epidemiologists, large swine producers, pork processors, pharmaceutical firms and policy makers, especially those concerned with the prevention and control of swine disease. The target audience for our research on the control of disease and parasites in the Chilean salmon industry was salmon producers, suppliers of inputs to the salmon industry, and government officials in Chile who monitor and regulate the salmon industry. Changes/Problems:The project focused almost exclusively on Porcine reproductive and respiratory syndrome (PRRS). PRSS is the most important swine disease in the US in terms of economic impact. A collaboration with veterinarians at the University of Minnesota and a graduate student at UC Davis, Pablo Valdes-Donoso, utilized a unique data set to understand the effect of a voluntary effort by producers through a Regional Control Project (RCP) to share data on PRSS outbreaks. Analysis of these data led us to analyze the relationships between airborne virus and animal movements, and to develop a model estimating the diffusion of a PRSS outbreak within the RCP region. Success in this effort allowed us to estimate the economic impact of sow vaccination and the use of biofilters in swine production facilities. This work was very fruitful and I decided to dedicate all of my time and effort to this project. That decision was also affected by problems that occurred in the other two components of the original proposal, i.e., the research on foot and mouth disease and on the diffusion and impact of rbST. Those projects were also inhibited by data problems and illness. The data bank used for research on FMD essentially disappeared as the graduate student who had prepared the data left the US, accepted and then left his academic appointment in his home country, and declared no interest in continuing the work. Efforts to obtain the data failed. Research on rbST ended with illness of a key collaborator. What opportunities for training and professional development has the project provided?One graduate student, Pablo Valdes-Donoso, received his PhD in Veterinary Medicine (Epidemiology) and his MS degree in Agricultural and Resource Economics. He then continued working as a Postdoc in the Agricultural Issues Center. How have the results been disseminated to communities of interest?I and my co-authors published numerous scientific articles in professional journals that focused on the prevention and control of Porcine reproductive and respiratory syndrome (PRSS). These articles reached academic researchers, particularly agricultural and livestock economists and veterinary epidemiologists. We also presented at numerous conferences and workshops, reaching swine producers, pork processors, producers of pharmaceutical products, e.g., vaccinations, and policy makers, especially those concerned with swine disease. We published an article in an industry journal discussing the control of disease and parasites in the Chilean salmon industry, which sought to reach salmon producers, suppliers of inputs to the salmon industry, and government officials in Chile who monitor and regulate the salmon industry. We received great interest in our work, both methodological advances and specific results, from participants in conferences and workshops. Each of the papers published have been cited. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
Porcine reproductive respiratory syndrome (PRRS) appeared in the US about 1986. Endemic in most of the world, it is one of the most economically damaging diseases in the United States. Because PRSS does not affect humans and has no impact on international trade, individual outbreaks are not non-reportable and individual producers have sole responsibility for its control. Producers have adopted measures such as sow vaccination, biofilters and improved biosecurity practices and have begun to share information on PRSS outbreaks. A particularly interesting case is an effort by a group of producers that formed a Regional Control Program (RCP, N212) in 2004. Despite the significant exchange of information regarding disease outbreaks and individual farmer efforts to control them, little was known about the effects of farmer investments or the potential benefits from collaborative actions. We use data from RCP-N212, supplemented from other sources, to develop several models whose results that provide new information about 1) what types of producers have participated in RCP-N212, 2) the relationship between swine animal movements on disease outbreaks, 3) the physical and economic effects of PRSS outbreaks on a set of sow farms and, ultimately, an estimate of the physical and economics effects of PRSS on farms in the RCP-N212 area of Minnesota in the absence of any control investments. Our estimates indicate that private investment, e.g., vaccination, is cost effective on most investing farms and has significant external effects by reducing damages on non-investing farms. We first used information collected by the RCP-N212 to quantify the extent to which RCPs contribute to PRRS control. Using repeated analysis of variance and general linear mixed-effects models, we analyzed the spatial and temporal participation by different types of swine farms in the RCP. The demography of premises (e.g., composition of farms with sows = SS and without sows = NSS) was assessed by a repeated analysis of variance. We found sow breeding units are more likely than production units without sows (fattening) to participate, suggesting that producers of sow breeding units were more willing to share information. The model shows that although the number of farms enrolled in RCP-N212 is increasing, certain types of farms show a hesitancy to do so. Methodologically, we developed a systematic approach to quantify participation by swine farms in RCPs. The second study focused on between-farm and farm-processor animal movements, which are believed to be one of the most important factors influencing the spread of infectious diseases in food animals, including in the US swine industry. Understanding the structural network of contacts in a food animal industry is a prerequisite to planning for efficient production strategies and for effective disease control measures. Unfortunately, data regarding between-farm animal movements in the US are not systematically collected. We develop a procedure to replicate the structure of a network, making use of partial data available, and use the model developed to predict animal movements among sites in 34 Minnesota counties. We summarized two networks of swine producing facilities in Minnesota, then we used a machine learning technique referred to as random forest, an ensemble of independent classification trees, to estimate the probability of pig movements between farms and/or markets sites located in two counties in Minnesota. The model was calibrated and tested by comparing predicted data and observed data in those two counties for which data were available. Finally, the model was used to predict animal movements in sites located across 34 Minnesota counties. Variables that were important in predicting pig movements included between-site distance, ownership, and production type of the sending and receiving farms and/or markets. Using a weighted-kernel approach to describe spatial variation in the centrality measures of the predicted network, we showed that the south-central region of the study area exhibited high aggregation of predicted pig movements. Our results show an overlap of movements with the distribution of outbreaks of porcine reproductive and respiratory syndrome, which is believed to be transmitted, at least in part, though animal movements. The methodology developed can be used used to estimate contact networks for other livestock systems when only incomplete information regarding animal movements is available. The third major study analyzed the effects of PRSS on production. PRRS' complex epidemiology and the diverse clinical effects observed in different types of infected farms have hampered efforts to quantify PRRS' temporal impact on production. We analyzed the effects of PRRS on the production of weaned pigs using a log-linear fixed effects model to evaluate longitudinal data collected from 16 sow farms belonging to a specific firm. We measured seven additional indicators of farm performance to gain insight into disease dynamics. We used pre-outbreak longitudinal data to establish a baseline that was then used to estimate the decrease in production. A significant rise of abortions in the week before the outbreak was reported was the strongest signal of PRRSV activity. In addition, production declined slightly one week before the outbreak and then fell markedly until weeks 5 and 6 post-outbreak. Recovery was not monotonic, cycling gently around a rising trend. At the end of the study period (35 weeks post-outbreak), neither the production of weaned pigs nor any of the performance indicators had fully recovered to baseline levels. This result suggests PRSS outbreaks may last longer than has been found in most other studies. We assessed PRRS' effect on farm efficiency as measured by changes in sow production of weaned pigs per year. We translated production losses into revenue losses assuming an average market price of $45.2/weaned pig. We estimate that the average PRSS outbreak reduced production by approximately 7.4%, relative to annual output in the absence of an outbreak. PRRS reduced production by 1.92 weaned pigs per sow when adjusted to an annual basis. This decrease is substantially larger than the 1.44 decrease of weaned pigs per sow/year reported elsewhere. The fourth major study used the information developed previously to develop a combined epidemiological-economic model to simulate the diffusion of a PRRS outbreak within the RCP-N212 area during a 26 week period. Next, we estimate the economic losses due to a PRRS outbreak in the absence of any control investments, and then estimate how these losses are reduced if producers invest in: 1) vaccination of sows against PRRS and/or 2) installation of bio-filters in breeding facilities. We find that adoption of vaccination, the installation of bio-filters, or the implementation of both preventive measures significantly decreases disease-related production losses. Our estimates also indicate that private investment has significant external effects by reducing damages on non-investing farms. The presence of positive external effects suggests that an industry-coordinated strategy, like a vaccine subsidy funded by a levy on slaughtered pigs, might increase vaccination and further reduce disease losses even in the absence of governmental action. The existence of strong external effects also suggests a rationale for making PRSS reportable. Although increased costs should be balanced against possible gains, increased information and/or government intervention might achieve significant net benefits.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2015
Citation:
Valdes-Donoso P. and Jarvis, L.S. 2015. Análisis económico en la gestión de salud de los peces. Salmonexpert. August.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Valdes-Donoso P., Jarvis L.S., Wright D., Alvarez J., Perez A.M. 2016. Measuring Progress on the Control of Porcine Reproductive and Respiratory Syndrome (PRRS) at a Regional Level: The Minnesota N212 Regional Control Project (RCP) as a Working Example. Plos One. February 19, 2016
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Valdes-Donoso, P., VanderWaal, K., Jarvis, L., Wayne, S., and Perez, A. 2017. Using machine learning to predict swine movements within a regional program to improve control of infectious diseases in the US. Frontiers in Veterinary Medicine: Veterinary Epidemiology and Economics. January 19, 2017.
- Type:
Journal Articles
Status:
Published
Year Published:
2018
Citation:
Valdes-Donoso, P., Alvarez, J., Jarvis, L.S., Morrison, R. and Perez, A. 2018. Production losses from an endemic animal disease: Porcine reproductive and respiratory syndrome (PRRS) in selected US sow farms. Frontiers in Veterinary Science, 5, May.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2018
Citation:
Pablo Valdes-Donoso. Economics and Farmed Fish Health Management: The Chilean Salmon Industry as a Case Study, 2018. University of California, Agricultural Issues Center. March 14
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2017
Citation:
Pablo Valdes-Donoso. Swine Seminars, School of Veterinary Medicine, University of Minnesota, St. Paul MN, US. June 2017. Epidemiological investigation of a non-reportable endemic disease: Porcine reproductive and respiratory syndrome (PRRS) in the US.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2016
Citation:
Pablo Valdes-Donoso. 2016 North American PRRS Symposium. Chicago IL, US. December 2016.Using machine learning to predict swine movements within a regional program to improve control of infectious diseases in the US and Production losses associated with porcine reproductive and respiratory syndrome (PRRS) in US sow farms.
- Type:
Other
Status:
Published
Year Published:
2017
Citation:
Pablo Valdes-Donoso and Andres Perez. PRRS has lingering negative impact. National Hog Farmer Magazine (http://www.nationalhogfarmer.com/animal-health/study-shows-prrs-has-lingering-negative-impact Jan 16th, 2017).
- Type:
Other
Status:
Published
Year Published:
2017
Citation:
Pablo Valdes-Donoso and Andres Perez. How much do porcine reproductive and respiratory syndrome (PRRS) cost to US? Dr. Morrison Swine Health Monitoring Project. University of Minnesota (https://www.vetmed.umn.edu/sites/vetmed.umn.edu/files/shmp_2016l17.29_cost_of_prrs_to_the_us_sciencepage.pdf Jan 13th, 2017)
- Type:
Theses/Dissertations
Status:
Accepted
Year Published:
2017
Citation:
Pablo Valdes-Donoso. Collective Strategies to Control PRRS, a Non-Reportable, Endemic Swine Disease
- Type:
Theses/Dissertations
Status:
Accepted
Year Published:
2017
Citation:
Pablo Valdes-Donoso. Epidemiological investigation of an endemic disease in a highly intensive animal production system in the US: The porcine reproductive and respiratory syndrome (PRRS)
- Type:
Journal Articles
Status:
Other
Year Published:
2019
Citation:
Pablo Valdes-Donoso and Lovell Jarvis. Private and Collective Strategies to Reduce Economic Damages from Porcine Reproductive and Respiratory Syndrome (PRRS), an Endemic Swine Disease in the US
- Type:
Other
Status:
Other
Year Published:
2019
Citation:
Pablo Valdes-Donoso, Lovell Jarvis, and Andres Perez. Individual and targeted control strategies for porcine reproductive and respiratory syndrome (PRRS) in the US
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2018
Citation:
Pablo Valdes-Donoso. Regional Strategies to Control Porcine Reproductive and Respiratory Syndrome (PRRS), a Non-Reportable, Endemic Swine Disease in the US. MSD High-Quality Pork Congress EU. Baveno, Italy. October 2018
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2016
Citation:
Pablo Valdes-Donoso. 1. Using machine learning to predict swine movements within a regional program to improve control of infectious diseases in the US and Production losses associated with porcine reproductive and respiratory syndrome (PRRS) in US sow farms. 2016 North American PRRS Symposium. Chicago IL, US. December 2016
- Type:
Journal Articles
Status:
Awaiting Publication
Year Published:
2019
Citation:
Valdes-Donoso, P., Alvarez, J., Jarvis, L. S., Morrison, R. B. & Perez, A. M. Pérdidas de producción asociadas a PRRS en un grupo de granjas de madres de Estados Unidos. Suis magazine, Espana. Forthcoming, February 2019.
- Type:
Other
Status:
Published
Year Published:
2017
Citation:
Pablo Valdes-Donoso and Andres Perez. PRRS has lingering negative impact. National Hog Farmer Magazine (http://www.nationalhogfarmer.com/animal-health/study-shows-prrs-has-lingering-negative-impact Jan 16, 2017).
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Progress 10/01/16 to 09/30/17
Outputs Target Audience:Published articles were read and cited by professional veterinarians and economists, by hog producers in the US and elsewhere in the world, and by policy makers in the US. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Continuing education in research for Pablo Valdes-Donoso, who completed a PhD in June 2017 and an MS degree based on his research on PRRS in December 2017. How have the results been disseminated to communities of interest?Pablo Valdes-Donoso, presented "Epidemiological investigation of a non-reportable endemic disease: Porcine reproductive and respiratory syndrome (PRRS) in the US" in the Swine Production Seminar, School of Veterinary Medicine, University of Minnesota, June 9, 2017. What do you plan to do during the next reporting period to accomplish the goals?Will publish journal article on the "Economic evaluation of individual and collective strategies to control a non-reportable endemic disease: Porcine reproductive and respiratory syndrome (PRRS) in the US".
Impacts What was accomplished under these goals?
Research and outreach on this project focused on the effect of voluntary Regional Cooperative Programs (RCPs) for controlling PRRS in the swine industry. We published one paper using machine learning to predict swine movements within a region of Minnesota, using data from a previous study that could be extrapolated to a larger region. The model predicted animal movements that are congruent with anecdotal evidence and that correlate highly with PRSS outputs in the region and which are believed to be associated with animal movements. We published another paper measuring the impact of PRSS on the production of weaned pigs among a swine production system. The results showed that the impact of PRSS was both larger in terms of physical and financial loss than has been estimated in other studies, even though the sows in this system had all been vaccinated. We also showed that the duration of a PRRS outbreak is significantly longer, i.e., the recovery to the pre-outbreak level of output was slow and also non-monotonic. We are preparing a paper that estimated the effects of two PRRS control instruments: 1) vaccination of sows and 2) investment in biofilters for sow farms. We find that vaccination significantly reduces the effects of a PRRS outbreak and, considering the externalities associated with vaccination of a single facility, that all sow farms should be encouraged to vaccinate. The data are less clear for biofilters, which are very heterogeneous in design, cost and effect.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Valdes-Donoso, P., VanderWaal, K., Jarvis, L., Wayne, S., and Perez, A. 2017. Using machine learning to predict swine movements within a regional program to improve control of infectious diseases in the US. Frontiers in Veterinary Science: Veterinary Epidemiology and Economics, 19 January 2017.
- Type:
Journal Articles
Status:
Submitted
Year Published:
2018
Citation:
Valdes-Donoso, P., Alvarez, J., Jarvis, L.S., Morrison, R. and Perez, A. Submitted. Production losses from an endemic animal disease: Porcine reproductive and respiratory syndrome (PRRS) in US sow farms. Frontiers in Veterinary Science.
- Type:
Theses/Dissertations
Status:
Published
Year Published:
2017
Citation:
Epidemiological investigation of an endemic disease in a highly intensive animal production system in the US: The porcine reproductive and respiratory syndrome (PRRS), PhD Dissertation, School of Veterinary Medicine, University of California, Davis, 2017.
- Type:
Theses/Dissertations
Status:
Accepted
Year Published:
2017
Citation:
Economic evaluation of individual and collective strategies to control a non-reportable endemic disease: Porcine reproductive and respiratory syndrome (PRRS) in the US, MS Thesis, Department of Agricultural and Resource Economics, University of California, Davis, 2017.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Valdes-Donoso P., Jarvis L.S., Wright D., Alvarez J., Perez A.M. 2016. Measuring Progress on the Control of
Porcine Reproductive and Respiratory Syndrome (PRRS) at a Regional Level: The Minnesota N212 Regional Control
Project (RCP) as a Working Example. Plos One. February 19, 2016
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Progress 10/28/15 to 09/30/16
Outputs Target Audience:Academic researchers, hog producers in the US, government researchers, and policy makers working on food policy as related to animal disease prevention and control, particularly as regards foot and mouth disease. Changes/Problems:Work has focused on the losses caused by PRRS in Minnesota, but I will return to research on rbST adoption. What opportunities for training and professional development has the project provided?Continuing education in research for Pablo Valdes-Donoso, who is completing a PhD and an MS degree based on his research on PRRS. How have the results been disseminated to communities of interest? Lovell Jarvis presented faculty research lecture to School of Veterinary Medicine, University of Minnesota, on "A review of the use of economics by economists and veterinarians to analyze animal health management." December 9, 2015. Pablo Valdes-Donoso presented a paper at the 4thInternational Society of Veterinary Epidemiology andEconomics (ISVEE14). November 2015, on "Measuring progress onporcinereproductive and respiratory syndrome (PRRS) control ata regional level: theMinnesota N212 regional control project(RCP) as a working example." Also, Pablo Valdes-Donoso presented papers to the Leman Conference, for hog producers, economists and veterinary researchers in Chicago, 2015 and 2016. Pablo Valdes-Donoso also presented a paper to a meeting of producers in the Minnesota N212 Regional Control Project in 2016. What do you plan to do during the next reporting period to accomplish the goals? Continuing education in research for Pablo Valdes-Donoso, who presented a paper at the 4thInternational Society of Veterinary Epidemiology andEconomics (ISVEE14). November 2015. Measuring progress onporcinereproductive and respiratory syndrome (PRRS) control ata regional level: theMinnesota N212 regional control project(RCP) as a working example. Expect to complete response to editor for paper "Measuring production losses from endemic animal disease: Porcine reproductive and respiratory syndrome," and work with Valdes-Donoso to complete his MS thesis in Agricultural and Resource Economics. Also hope to return to research on the adoption of rbST in California.
Impacts What was accomplished under these goals?
My co-author on these papers is Pablo Valdes-Donoso, a Chilean graduate student that I have mentored since he began his MS in Veterinary Medicine at UC Davis. He is now completing his PhD in Veterinary Medicine (epidemiology) and and a second MS in Agricultural and Resource Economics. In the last reporting period, we have published 1) a paper on the use of economics in the management of animal health issues in the Chilean salmon industry, 2) a paper on the use of a Regional Control Program to measure and control PRSS, a swine disease, 3) a paper using machine learning to predict swine movements within a regional program to thereby improve control of infection diseases that may be caused by animal movements, and 4) a paper measuring production losses from endemic Porcine Reproductive and Respiratory Syndrome (PRRS).
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2015
Citation:
Valdes-Donoso P.�and Jarvis, L.S. 2015.��An�lisis econ�mico en la gesti�n de salud de�los peces. Salmonexpert. August.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Valdes-Donoso P., Jarvis L.S., Wright D., Alvarez J., Perez A.M.�2016. Measuring Progress on the Control of Porcine�Reproductive and�Respiratory Syndrome (PRRS) at a Regional�Level: The Minnesota N212 Regional�Control Project (RCP) as�a Working Example. Plos One.��February 19, 2016
- Type:
Journal Articles
Status:
Awaiting Publication
Year Published:
2017
Citation:
Valdes-Donoso, P., VanderWaal, K., Jarvis, L., Wayne, S., and Perez, A. 2017. Using machine learning to predict swine movements within a regional program to improve control of infectious diseases in the US. Frontiers in Veterinary Medicine: Veterinary Epidemiology and Economics. Forthcoming.
- Type:
Journal Articles
Status:
Submitted
Year Published:
2017
Citation:
Pablo Valdes-Donoso,�Julio Alvarez,�Lovell Jarvis, Andres�Perez.�Measuring production losses from endemic�animal�disease: Porcine reproductive and respiratory syndrome�(PRRS) in US�sow farms.�Submitted to Plos One
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