Recipient Organization
CORNELL UNIVERSITY
(N/A)
ITHACA,NY 14853
Performing Department
Crop & Soil Sciences
Non Technical Summary
Corn is grown for grain and silage by cash-grain & dairy farmers in New York on over 1 million acres of land. In debates on how to optimize estimates of corn yields, opinions range among continuing conventional measurements of soil properties, sampling at greater depth in the root zone, soil health testing, focusing on plant status as an integrator of the conditions that affect growth, and using precision-agriculture methods. Precision agriculture (PA), justified by its ability to address within-field spatial heterogeneity, is used increasingly to improve management toward maximizing profits.However, a number of authors have argued that the basic assumptions of current PA methodologies do not adequately account for the relationship between the nutrient status of soils, spectral properties of imagery, and crop growth pattern (e.g., Baveye and Laba, 2015). New approaches need to be explored, possibly using some of the new technologies that have become available in the last 10 years.Among these new technologies, Unmanned Aerial Systems (UASs) still have been used relatively little in agricultural applications (DeGloria et al., 2014). Nevertheless, the ease with which they allow repeated measurements at a generally low elevation with low ground speed and high spatial resolution can be taken advantage of to gain a better understanding of the relationship between plant yields, soil properties and spectral response patterns. The use of UASs for agricultural purposes is projected to become a multi-billion dollar industry in the next ten years. With one of six national UAS testing sites located in New York, farmers and Cornell Cooperative Extension educators have the unique opportunity to be on the cutting edge of evaluating this new technology.In this general context, the proposed research will involve farmers, researchers and extension agents in an initial evaluation of how UASs can be used to sharpen some of the technical assumptions on the basis of which PA is generally predicated. This information can improve and inform future corn management strategies and increase educators' ability to convey the value of UASs to farmers. We shall use a UAS to monitor bare soil before crop emergence and soil-crop cover of corn before harvest. We will also measure soil nutrient status and plant biomass before harvest. This data will be used to determine how UAS spectral measurements are correlated to soil characteristics and crop yield. These observations will determine when to use UASs, how to make use of the information they provide to improve corn management, and how to use this new technology to maximize crop yields.
Animal Health Component
100%
Research Effort Categories
Basic
(N/A)
Applied
100%
Developmental
(N/A)
Goals / Objectives
This project seeks to evaluate the use of an innovative data collection device, UAS, to obtain process and distribute high spatial- and temporal- resolution imagery to relate spectral data with crop growth patterns and soil data to inform management strategies and predict crop yields. Potential benefits of this methodology may include reduction of the cost and time associated with soil and vegetation sample analyses; reduced labor costs of monitoring on large farms; and reduced inputs of fertilizer and pesticides, providing decreased environmental impacts.Specific objectives are to:1. Determine how successfully UAV-collected spectral data on bare soil spectral data predicts soil moisture and organic matter.2. Determine whether UAV-collected spectral data is more highly correlated with organic matter in conventional depth (5-cm depth) soil samples versus organic matter in deeper root zone samples.3. Determine how successfully UAV-collected spectral data on corn vegetative cover predicts crop yield.4. Evaluate conventional soil line and vegetative indices and soil-modified vegetative indices developed from UAV-collected spectral data.
Project Methods
Our primary source of spectral data will be a Lancaster Hawkeye III UAS airborne sensor that collects data in the visible (8mm/pixel) and multispectral (2.7cm/pixel; blue, green and near-infrared) ranges. Its sensing platform is comprised of off-the-shelf cameras in which standard filters have been replaced with other filters of the same optical thickness. To better understand the spectral data being collected, we will use an OceanOptics (owned by the Cornell Dept of Civil & Environment Engineering) to determine sensor specifications (e.g., camera and filter characteristics), including focal length, filter types and behavior, radiometric resolution, field of view, and angle of viewing.We will scan 4 corn fields in western NY that have FAA approval for UAV flights during the 2016/17/18 growing seasons. To correlate the spectral response to soil and plant biomass, imagery will be collected prior to planting (bare soil) and prior to harvest (maximum canopy). All images will be geo-referenced to the Universal Transverse Mercator (UTM) coordinate system, Zone 17, North American Datum of 1983 (NAD83). Four stationary markers will be placed around each cornfield. Images containing these markers will be geo-referenced to the GPS coordinates of the markers. All other images will be mosaicked to those base images using the geo-processing capabilities available within ArcGIS10.3.1.When working with remotely sensed data, the ideal sampling unit is the individual pixel. However, the accuracy of a GPS unit combined with the positional accuracy of the UAS itself could add a potentially high level of uncertainty in locating individual pixels on the ground. Therefore, we will try to use field plots that encompass the rooting zone of the plants being sampled and are, at least, four times the minimum cell size of the UAS imagery (6 cm2 multiplied by 4 ~ 29 cm2). As an added precaution, onscreen digitizing of an ARCVIEW shape file of field plots will be created using Digital Orthophoto Quarter Quads (DOQQ), GPS points, and visual inspection of the plots. The digitizing will be done on site when possible. The shape and size of the sample plot will be estimated and recorded. Minimally, two points will be recorded. Field plots will be overlaid on the image to verify their spatial and compositional accuracy. GPS point data will be collected using a Trimble Geo Explorer XH with sub-foot post correction accuracy.To complement the UAS-acquired data, we will obtain hyperspectral data using a proximal sensor, the ASD FieldSpec Pro (owned by the Cornell Section of Soil & Crop Sciences) at each soil/vegetation sampling point, with the sensor suspended above the center of each sampling location. For each sampling date, ASD data will be collected in a consistent manner. The ASD is a spectroradiometer able to acquire data from 350 nm to 2500 nm, via three sensors (Visible/Near Infrared sensor for 350 - 1050 nm; and two Short-Wave Infrared sensors for 900 - 1850 nm and 1700 - 2500 nm; the controlling software automatically accounts for the overlap in wavelength intervals) (Analytical Spectrum Devices, Inc., 2002). Proximal hyperspectral data has been used for determining soil characteristics in agricultural applications for some years (Mulder et al., 2011; DeGloria et al., 2014). The hyperspectral data responds in a measurable manner to soil moisture and to organic matter. In the visible range, soil moisture and organic matter both darken the image, but it is not possible to differentiate the cause of the darkening without further data. In this application, we will compare the results from the UAS-acquired data with the results of the ASD FieldSpec Pro to investigate the ability to sense soil moisture and organic matter content with the UAS-acquired data.The plant composition, soil properties and landscape features at each sampling location will be characterized and recorded. Twenty stratified random bare soil samples at a 5cm depth will be obtained in each of the four fields. Two sets of soil samples, at the same locations that were sampled for bare soil, will be gathered prior to harvest. After a 5cm depth sample has been acquired, soil samples at different depths in the root zone of individual plants, which are closest to the original sampling locations, as defined by the permanent marker, will be gathered in each field. Root zone samples will be composited to obtain a statistical average of the soil composition in the root zone, which may be very different than the same parameter right at the soil surface as viewed by remote sensing equipment.Standard soil analyses for N,P,K content, pH, organic matter and humidity level will be performed on all soil samples. Above-ground biomass measurements will be made on the plants associated with the 20 plant-samples (Caldwell et al., 2014; Liu et al., 2010) and belowground biomass, corn roots will be sampled (Mazilli et al., 2015). For the same plants, and in parallel of the sampling of the soil in depth, we shall also determine the spatial pattern of propagation of roots.Imagery will be compared to soil sample test results, field yield and individual plant/root biomass measurements to determine if there is a correlation between spectral signatures and plant biomass, soil nutrient status or yield. A regression analysis between spectral values within different regions of the UAS-acquired data (predictor variable) and soil properties and plant/root biomass measurements (response variables) will be performed using the linear model function in R (R Core Team, 2014). Combinations of predictor variables (spectral responses in different areas of the spectrum) that produce the best models will be selected from the larger pool of spectral information through a stepwise regression. Once the best models are identified, a final "best" model that has an adequate fit while using the fewest parameters will be selected by implementing the Akaike Information Criterion.Soil line analysis and vegetation indices will be calculated to determine the validity of these tools when applied to UAV-collected data (Yoshioka et al., 2010). Vegetation indices (generally a ratio of red and near-infrared (NIR) spectral regions) have been used with satellite remotely-sensed data, and have undergone efforts to minimize factors such as atmospheric variations and soil brightness (Ustin et. al., 1999; Gitelson et al, 2002; Prabhakara et al., 2015). Other ratios will be tested for use with this platform, which does not collect in the red. UAV-acquired data will be examined for advantages due to low altitude (potentially avoiding atmospheric variations) and the ability to observe vegetative cover and soil exposure (Geipel and Claupein, 2014). We will examine the ability of these techniques to provide information about the vegetation and soil in the low altitude, high spatial-resolution imagery.The Lancaster Hawkeye system does not include spectral data processing software. We will explore the use of open-source data (such as VisualSM or MS Photosynth) to process the raw imagery, allowing creation of custom mosaics, stereo images, and ability to make spectral measurements with the UAV-acquired data. Open-source data and processing procedures will be readily available to users who wish to have more control of the processing or make more innovative use of the data.Evaluation: Indicators of success will be completion of a study that allows us to state clearly the capacity and limitations of the use of UAV-acquired data for crop and soil management; to provide guidance on both acquisition and use of these data; and to provide methods for interpreting data acquired from the Lancaster Hawkeye III UAS sensor.Milestones:Characterization of the sensor.Successful georeferencing methods.Acquisition of imagery and biomass/ soil samples each season.Interpretation of data each year.Final interpretation of data.Results summarized and submitted for publication.