Progress 10/01/15 to 09/30/19
Outputs
Target Audience:Bean Farmers, Bean Elevator Managers in Michigan; National Food Industry and Food Processors and Consumers; Bean Researchers Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?
Nothing Reported
How have the results been disseminated to communities of interest?Published in referred scientific journals What do you plan to do during the next reporting period to accomplish the goals?Continue breeding and genetic studies on quality and performance traits in 12 dry bean market classes
Impacts
What was accomplished under these goals?
The MSU dry bean breeding and genetics program conducted 17 yield trials in 2019 in ten market classes and participated in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. The USDA-ARS Dry Bean Genetics Program has breeding trials within the cranberry, kidney, yellow, and black market classes and organic beans. A yellow bean diversity panel of ~300 lines was planted in replicated trials in Michigan, Colorado, and Nebraska, and a study was conducted on the development and nutritional evaluation of pastas made from dry bean flour. Whole dry beans were milled into flour and used to make gluten free fresh pastas. Six bean cultivars each from a different market class (white kidney-Snowdon, navy-Alpena, otebo-Samurai, cranberry-Etna, dark red kidney-Red hawk and black- Zenith) were made into pasta. All cultivars were developed by Michigan State University except Etna which was developed by Seminis. The sensory appeal of each of the bean pastas was evaluated by 100 consumer panelists. While consumers preferred the flavor, texture and appearance of the wheat pasta to the dry bean pasta, 36% of participants said they would definitely or probably purchase the dry bean pastas from the light colored beans. Nutritional value of the bean pastas were also determined and compared to cooked whole beans of the cultivar and to fresh wheat pasta. Although, dry bean and wheat pastas have similar caloric (402-409 kcal) and fat (2.2-2.6%) contents, bean pastas were nutritionally superior to wheat pastas in regard to protein (16 vs 19-22%) and mineral (0.6-0.9 vs 2.5-2.7%) contents. Varietal differences existed among the selected dry bean pastas in terms of protein (19-22%), total starch (43-47%) and resistant starch (3.2-3.6%) concentrations. There was some loss of nutritional value of bean pasta vs. whole boiled beans but this can mostly be attributed to the bean pasta being 90% bean. These results suggest that single variety fresh dry bean pastas have commercial potential in the U.S. as healthy gluten free pasta options. A study to map genomic regions that contribute to color retention following canning of black beans was concluded. Two recombinant inbred populations developed from parents contrasting for this trait were grown, canned and color retention measurements were compared from a trained panel, spectrophotometer, and digital images and mapped as separate traits during QTL (quantitative trait loci) analysis. QTL for post-processing color retention were consistently detected across phenotyping methods, populations, and years on three chromosomes, Pv03, Pv08, and Pv11. The QTL on Pv11 explained the most phenotypic variation (R2 ≈ 20%) and mapped to a small region near 52.5 Mb and coincided with previous study on black bean color traits. The QTL on Pv08 had the highest LOD score (~16) and colocalized with the color [CRPrp] genes. The QTL identified in this study can be useful for breeders looking to meet consumer demands by improving the color of canned black beans.
Publications
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
1. Cappa, C., J. D. Kelly, and P.K.W. Ng. 2019. Baking performance of 25 edible dry bean powders: correlation between cookie quality and rapid test indices, Food Chemistry, doi: https://doi.org/10.1016/j.foodchem.2019.125338
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
2. Cichy, K.A., Wiesinger, J.A., Berry, M., Nchimbi-Msolla, S., Fourie, D., Porch, T.G., Ambechew, D., Miklas, P.N. (2019) The role of genotype and production environment in determining the cooking time of dry beans (Phaseolus vulgaris L.) Legume Science, e13
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
3. Dramadri, I.O., S. Nkalubo, and J. D. Kelly. 2019. Identification of QTL associated with drought tolerance in Andean common bean. Crop Sci. 59:114. doi: 10.2135/cropsci2018.10.0604
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
4. Farooq, M., B. A. Padder, N. N. Bhat, M.D. Shah, A. B. Shikari, H. E. Awale, and J. D. Kelly. 2019. Temporal expression of candidate genes at the Co-1 locus and their interaction with other defense related genes in common bean. Physiol. Mol. Plant Path. doi: https://doi.org/10.1016/j.pmpp.2019.101424
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
5. Hooper, S.D., Glahn, R.P., and Cichy, K.A. (2019) Single Varietal Dry Bean (Phaseolus vulgaris L.) Pastas: Nutritional Profile and Consumer Acceptability. Plant Foods for Human Nutrition, 1-8.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
6. Jacobs, J.L., J. D. Kelly, E. M. Wright, G. Varner, and M. I. Chilvers. 2019. Determining the soilborne pathogens associated with root rot disease complex of dry bean in Michigan. Plant Health Progress 20:122-127. doi.org/10.1094/PHP-11-18-0076-S
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
7. Kamfwa, K., Cichy, K.A., Kelly, J.D. (2019) Identification of quantitative trait loci for symbiotic nitrogen fixation in common bean. Theoretical and Applied Genetics. Available: https://doi.org/10.1007/s00122-019-03284-6
- Type:
Journal Articles
Status:
Accepted
Year Published:
20199
Citation:
8. Long, Y., Bassett, A., Cichy, K., Thompson, A., & Morris, D. (2019). Bean Split Ratio for Dry Bean Canning Quality and Variety Analysis. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops (pp. 0- 0).
- Type:
Journal Articles
Status:
Accepted
Year Published:
2018
Citation:
9. Wiesinger, J., Cichy, K.A, Tako, E., Glahn, R. (2018) The fast cooking and enhanced iron bioavailability properties of the Manteca yellow bean (Phaseolus vulgaris L.). Nutrients. 10:1609
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
10. Wiesinger, J.A., Glahn, R.P., Cichy, K.A., Kolba, N., Hart, J.J. and Tako, E. (2019) An In Vivo (Gallus gallus) Feeding Trial Demonstrating the Enhanced Iron Bioavailability Properties of the Fast Cooking Manteca Yellow Bean (Phaseolus vulgaris L.). Nutrients, 11(8), p.1768
- Type:
Journal Articles
Status:
Accepted
Year Published:
2019
Citation:
11. Winham, D.M., Tisue, M.E., Palmer, S.M., Cichy, K.A., Shelley, M.C. (2019) Dry bean preferences and attitudes among Midwest Hispanic and non-Hispanic white women. Nutrients. 11:178
|
Progress 10/01/17 to 09/30/18
Outputs
Target Audience:Bean Farmers, Bean Elevator Managers in Michigan; National Food Industry and Food Processors and Consumers; Bean Researchers Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Students receiving training toward master and doctoral degrees in plant breeding, genetics, and biotechnology How have the results been disseminated to communities of interest?Refereed publications, bulletins, national meetings, local extension meetings, meetings and outreach with school lunch buyers, small businesses, and community members What do you plan to do during the next reporting period to accomplish the goals?Continue to conduct and participate in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. Continue genetic studies on drought tolerance in Andean beans and canning quality of black beans
Impacts
What was accomplished under these goals?
The MSU dry bean breeding and genetics program conducted 23 yield trials in 2018 in ten market classes and participated in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. The USDA-ARS Dry Bean Genetics Program has breeding trials within the cranberry, kidney, yellow, and black market classes. A yellow bean diversity panel of ~300 lines was planted in a replicated trial at the Montcalm Research Farm in Michigan, Colorado, and Nebraska. An organic kidney bean breeding program was begun this year and selection and evaluation will be conducted on certified organic farms in Michigan. Recombinant inbred line populations Cal96 x MLB49-89A and Stampede x Red Hawk were planted in 2018 to evaluate Fusarium root rot and root system architecture interactions. The physiology of FRR resistance in CAL x MLB high and low performers was evaluated. From the CAL96 xMLB49-89A RIL population screening for Fusarium root rot, the 10 most susceptible and 10 most resistance lines were screened in a growth chamber for various physiological responses. At 7 days, plants were inoculated with either mock or Fusarium brasiliense inoculum. At 14 days, plants were destructively sampled. Many non-root phenotypes, such as photosynthetic rate and stomatal density, were not strongly correlated with disease severity. The severity of disease symptoms on roots did not directly correspond to disease severity on the hypocotyl. Some resistant lines have high hypocotyl DS but very low root DS, however, the susceptible lines tend to have higher root disease severity scores. In fungal treated plants, root disease severity was correlated with taproot length (-0.49), basal root width (0.52), root growth per day (-0.54), and shoot growth per day (-0.66). From these data, we have identified four lines that consistently resistant or susceptible to FRR across field, greenhouse, and growth chamber environments (CM517-res, CM521-res, CM299-sus, and CM222-sus). A study was initiated to determine the genetics of color retention in black beans following processing. Two half-sib recombinant inbred line (RIL) populations segregating for post-processing color retention were developed and evaluated for color retention following canning over two growing seasons. QTL governing color retention and other quality traits were identified and compared to previous studies. QTL for post-processing color retention were detected on six chromosomes, with QTL on Pv03, Pv08, and Pv11 being the most consistent across both subjective and objective phenotyping methods. The QTL on Pv08 had high LOD scores (8) and explained a large amount of phenotypic variation, but mapped to a large physical interval due to low marker coverage. Overall, the region from 1.5-7.25 Mb on Pv08 was found to be a key determinant of post-processing color retention in both populations. The Co-4 locus conditioning resistance to anthracnose (Colletotrichum lindemuthianum) resides within this interval at approximately 2.8 Mb (Oblessuc et al., 2015), and the complex C locus [C R Prp] also maps in this region (McClean et al., 2002). Interestingly, all loci within the complex C locus are involved in pigmentation: C determines seed coat patterning (Prakken, 1974); R determines red seed coat coloration (Prakken, 1974); and Prp determines pod pigmentation (Bassett, 1994). While the complex C locus is an important determinant of pigmentation of dry beans, it is unknown if it also plays a role in seed coat color retention of canned black beans. This region of Pv08 is crucial to dry bean pigmentation and canned color retention, but additional markers are needed to determine the actual physical location of the color QTL identified in this study. Additional QTL for color retention co-localized to a region near 52.5 Mb on Pv11. This relatively tight physical interval explained a large amount of phenotypic variation (R2≈20%) and had a large effect size on post-processing color retention across populations, years, and methods of measurement. QTL for Lab color traits previously identified by Cichy et al. (2014) mapped to the same physical region as the co-localizing QTL for color retention identified in the present study.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2018
Citation:
1. Alladassi, B.M.E., S.T. Nkalubo, C. Mukankusi, H.N. Kayaga, P. Gibson, R. Edema, C.A. Urrea, J.D. Kelly, and P.R. Rubaihayo. 2018. Identification of common bean genotypes with dual leaf and pod resistance to common bacterial blight disease in Uganda. African Crop Science Journal 26:63-77.
2. Cappa, C., J. D. Kelly, and P. K.W. Ng. 2018. Seed characteristics and physicochemical properties of powders of 25 edible dry bean varieties. Food Chemistry 253:305313. doi.org/10.1016/j.foodchem.2018.01.048
3. Izquierdo, P., Astudillo, C., Iqbal, A.M., Blair, M.B., Raatz, B., and Cichy, K.A. (2018) Meta-QTL analysis of seed iron and zinc concentration in common bean (Phaseolus vulgaris L.). Theoretical and Applied Genetics, https://doi.org/10.1007/s00122-018-3104
4. Kamfwa, K., J. S. Beaver, K. A. Cichy, and J. D. Kelly. 2018. QTL mapping of resistance to bean weevil in common bean. Crop Sci. 58: doi: 10.2135/cropsci2018.02.0106
5. Kelly, J.D., G.V. Varner, P. N. Miklas, K. A. Cichy and E.M. Wright. 2018. Registration of Cayenne small red bean. J. Plant Regist. 12:194198. doi:10.3198/jpr2017.05.0033crc
6. Kelly, J.D., G.V. Varner, M.I. Chilvers, K. A. Cichy and E.M. Wright. 2018. Registration of Red Cedar dark red kidney bean. J. Plant Regist. 12:199202. doi:10.3198/jpr2017.05.0034crc
7. Katuuramu, D.N., Hart, J.P., Porch, T.G., Grusak, M.A., Glahn, R.P., and Cichy, K.A. 2018. Genome-wide association analysis of nutritional composition related traits and iron bioavailability in cooked common bean (Phaseolus vulgaris L.) seeds. Molecular Breeding 38: 44. https://doi.org/10.1007/s11032-018-0798-x
8. Mendoza, F.A., K.A. Cichy, C. Sprague, A. Goffnett, R. Lu, and J.D. Kelly. 2018. Prediction of canned black bean texture (Phaseolus vulgaris L.) from intact dry seeds using visible/near-infrared spectroscopy and hyperspectral imaging data. J. Sci. Food Agric. 98: 283290. doi: 10.1002/jsfa.8469
9. Mendoza, F. A., J. A. Wiesinger, R. Lu, S. Nchimbi-Msolla, P. N. Miklas, J.D. Kelly, and K.A. Cichy. 2018. Prediction of cooking time for soaked and unsoaked dry beans (Phaseolus vulgaris L.) using hyperspectral imaging technology. The Plant Phenome Journal. doi:10.2135/tppj2018.01.0001
10. Mukamuhirwa, F., L. Butare, J. Kelly, B. Waweru, T. Niyibigira and G. Mukamurezi. 2018. Evaluation of introduced bean genotypes for adaptability and root rot resistance in Rwanda. International J. Environment, Agriculture and Biotechnology 3:143-159.
11. Traub, J., T. Porch, M. Naeem, Carlos A. Urrea, G. Austic, J. D. Kelly, and W. Loescher. 2018. Screening for heat tolerance in Phaseolus spp. using multiple methods. Crop Sci. 58: doi:10.2135/cropsci2018.04.0275
12. Wang, W., J.L. Jacobs, M.I. Chilvers, C. M. Mukankusi, J.D. Kelly, and K.A. Cichy. 2018. QTL analysis of Fusarium root rot resistance in an Andean x Middle American RIL population. Crop Sci. 58:11661180. doi:10.2135/cropsci2017.10.0608
- Type:
Book Chapters
Status:
Published
Year Published:
2018
Citation:
Kelly, J.D. 2018. Developing improved varieties of common bean, 2:3-17. In: Achieving sustainable cultivation of grain legumes. Vol. 2: Improving cultivation of particular grain legumes (eds. Sivasankar S., Bergvinson D., Gaur P., Agrawal S.K., Beebe S., Tam� M.) Burleigh Dodds Science Publishing, Cambridge UK, pp. 376.
Kelly, J.D., and N. Bornowski. 2018. Marker assisted breeding for economic traits in common bean. 211-238. Chp. 10. In: Biotechnologies of Crop Improvement: Volume 3: Genomic Approaches. (eds. S. S. Gosal, S. H. Wani). Springer Pub. Cham, Switzerland, pp 348.
|
Progress 10/01/16 to 09/30/17
Outputs
Target Audience:Bean Farmers, Bean Elevator Managers in Michigan; National Food Industry and Food Processors and Consumers; Bean Researchers Changes/Problems:none What opportunities for training and professional development has the project provided?Five students receiving training toward master and doctoral degrees in plant breeding, genetics, and biotechnology How have the results been disseminated to communities of interest?Refereed publications, bulletins, national meetings, local extension meetings, meetings and outreach with school lunch buyers, small businesses, and community members What do you plan to do during the next reporting period to accomplish the goals?Continue to conduct and participate in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. Continue genetic studies on drought tolerance in Andean beans and canning quality of black beans
Impacts
What was accomplished under these goals?
A study was undertaken to investigate the chemical composition, functional properties, starch digestibility, and cookie-baking performance of bean powders from 25 dry bean varieties grown in Michigan. The varieties represented ten commercial classes and most varieties were released by the dry bean breeding program at MSU. The beans were ground into coarse (particle size ≤ 1.0 mm) or fine (≤ 0.5 mm) powders. Starch and protein contents of the bean powders varied between 34.4 and 44.5% and between 19.1 and 26.6% (dry basis, db), respectively. Thermal properties, pasting properties, and water-holding and oil-binding capacities of the bean powders differed and were affected by particle size. After blending the bean powders with corn starch (bean:starch = 7:3, db), the blends were used for cookie baking following a standard method. Generally, the cookies baked from the fine bean powders had smaller diameters, greater thicknesses, and greater hardness values than those from the coarse counterparts. The baking test could differentiate the cookie-baking performances of the bean powders obtained from the 25 studied varieties. Larger proportions of resistant starch were retained in the bean-based cookies (55-127%) than in the wheat-flour-based cookies (10-20%) after baking. With higher contents of resistant starch and protein, the bean-based cookies had more desirable nutritional profiles than those baked from wheat flour. A project to develop and evaluate single variety fresh dry bean pastas for nutritional profile and consumer acceptability was conducted. Whole dry bean flour was formulated into single variety fresh pastas and compared to boiled beans. Consumer sensory evaluations of six single bean variety pastas (white kidney, navy, otebo, cranberry, dark red kidney and black) along with two wheat controls were also conducted. Dry bean pastas retained the nutritional profile of boiled whole seeds with respect to protein, starch as well as iron concentrations. They are also nutritionally superior to wheat pasta with higher protein, iron and resistant starch concentrations (~22 %, 58 µg, 3.2% vs 16%, 35 µg, 1.2% respectively) and lower starch content (44% vs 68%). Resistant starch (a component of dietary fiber) concentrations were improved in the bean pastas when compared to their boiled whole seed counterparts. Varietal and genotypic differences were observed in the colors and texture of dry bean pastas. No statistically significant differences were observed among the bean pastas for the attributes of appearance, aroma, flavor, texture and overall acceptability when evaluated by 100 consumer panelists. Based on nutritional and consumer evaluations, single variety dry bean pastas have commercial potential in the market place as healthy gluten free pasta options. A project was conducted to develop low phytae black beans and evaluate their end use quality. Dry beans are a rich source of iron and zinc, essential micronutrients lacking in human diets. However, the bioavailability of these micronutrients is low due to the presence of numerous inhibitors in dry bean seeds, especially phytate and tannins. Reducing the levels of inhibitors present in seeds improves bioavailability. Numerous low phytate grain and legume crops have been developed with enhanced nutritional value. The (lpa1) low phytate bean mutant has 90% less phytic acid than wild type levels resulting from a mutation in a single MPR1 gene. The goal of this study was to transfer the lpa1 low phytic acid source into U.S. adapted black bean germplasm and to evaluate the agronomic and end use quality attributes of improved lines. Hybridizations were made between a commercial black bean variety 'Zenith' and an lpa1 source, LPA-145. In the F2 generation single plant selections were made for plant architecture, adaptation and seed type. In the F2 through F4 generations, lpa were identified through melting curve analysis. F4 selections were evaluated for seed yield, phytic acid concentration, cooking, canning and nutritional quality. The lpa lines had 37 to 74% less phytic acid than the wild type (WT) siblings. The majority of the lpa lines had prolonged cooking times and even after 3 hours in boing water were not cooked, whereas WT cooked in 30 minutes. The lpa lines had higher levels of P, Fe, and Zn in the raw seed, after cooking the Fe levels remained higher in the lpa lines, but the P and Zn levels were lower in the lpa as compared to WT, suggesting they leached more readily in the lpa. A few lpa lines were identified with favorable yield performance, canning and cooking qualities, to be used in future bean breeding programs.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
1. Ai, Y., Y. Jin, J. D. Kelly, and P. K.W. Ng. 2017. Composition, functional properties, starch digestibility, and cookie-baking performance of dry bean powders from 25 Michigan-grown varieties. Cereal Chemistry 94:400-408. doi: 10.1094/cchem-04-16-0089-r
2. Alladassi, B.M.E., S.T. Nkalubo, C. Mukankusi, E. S. Mwale, P. Gibson, R. Edema, C.A. Urrea, J. D. Kelly, and P. R. Rubaihayo. 2017. Inheritance of resistance to common bacterial blight in four selected common bean (Phaseolus vulgaris L.) genotypes. J. Plant Breed. Crop Sci. 9:71-78. doi: 10.5897/JPBCS2017.0644
3. Heilig, J.A. J. S. Beaver, E. M. Wright, Q. Song, and J. D. Kelly. 2017. QTL analysis of symbiotic nitrogen fixation in a black bean population. Crop Sci. 57: 118-129. doi:10.2135/cropsci2016.05.0348
4. Heilig, J.A., E.M. Wright, and J.D. Kelly. 2017. Symbiotic N fixation of black and navy beans under organic production systems. Agron. J. 109:1-8. doi: 10.2134/agronj2017.01.0051
5. Hooper, S., Wiesinger, J. A., Echeverria, D., Thompson, H. J., Brick, M. A., Nchimbi-Msolla, S., & Cichy, K. A. 2017. Carbohydrate Profile of a Dry Bean (Phaseolus vulgaris L.) Panel Encompassing Broad Genetic Variability for Cooking Time. Cereal Chemistry, 94(1), 135-141
6. Kamfwa, K., D. Zhao, J. D. Kelly and K. A. Cichy. 2017. Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation. PLoS ONE 12(2):e0172141. doi:10.1371/journal.pone.0172141
7. McClean, P.E., S.M. Moghaddam, A-F. Lopez-Millan, M. A. Brick, J. D. Kelly, P. N. Miklas, J. M. Osorno, T. G. Porch, C.A. Urrea, A. Soltani and M. A. Gruzak. 2017. Phenotypic diversity for seed element concentration in North American dry bean (Phaseolus vulgaris L.) germplasm of Middle American Ancestry. Crop Sci. 57: doi:10.2135/cropsci2017.04.0244
8. Mendoza, F.A., K.A. Cichy, C. Sprague, A. Goffnett, R. Lu, and J.D. Kelly. 2017. Prediction of canned black bean texture (Phaseolus vulgaris L.) from intact dry seeds using visible/near-infrared spectroscopy and hyperspectral imaging data. J. Sci. Food Agric. doi: 10.1002/jsfa.8469
9. Mendoza, F.A., Kelly, J.D., and Cichy, K.A. 2017. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using a color imaging technique. International Journal of Food Properties 20:83-99 DOI:10.1080/10942912.2015.1136939
10. Odogwu, B.A., S. T. Nkalubo, C. Mukankusi, T. Odong, H. E. Awale, P. Rubaihayo, and J. D. Kelly. 2017. Phenotypic and genotypic screening for rust resistance in common bean germplasm in Uganda. Euphytica 213:49. doi: 10.1007/s10681-016-1795-y
11. Padder, B.A., P.N. Sharma, H.E. Awale, and J.D. Kelly. 2017. Colletotrichum lindemuthianum, the causal agent of bean anthracnose. J. Plant Pathology 99: 317-330. doi: 10.4454/jpp.v99i2.3867
12. Raboy, V., Johnson, A., Bilyeu, K., Brinch-Pedersen, H., Cichy, K., Hurrell, R.F., Zeder, C., Rasmussen, S.K., Warkentin, T.D., Thavarajah, P. and Shi, J. 2017. Evaluation of Simple and Inexpensive High-Throughput Methods for Phytic Acid Determination. Journal of the American Oil Chemists' Society 94:353-362
13. Porch, T., Cichy, K.A., Wang, W., Brick, M., Beaver, J., Santana, D., and Grusak, M. 2017. Nutritional composition and cooking characteristics of tepary bean (Phaseolus acutifolius Gray) in comparison with common bean (P. vulgaris L.). Genetic Resources and Crop Evolution 64:935-953
|
Progress 10/01/15 to 09/30/16
Outputs
Target Audience:Bean Farmers, Bean Elevator Managers in Michigan; National Food Industry and Food Processors and Consumers; Bean Researchers Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Two students receiving training toward master and doctoral degrees in plant breeding, genetics, and biotechnology How have the results been disseminated to communities of interest?Refereed publications, bulletins, national meetings, local extension meetings. What do you plan to do during the next reporting period to accomplish the goals?Continue to conduct and participate in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. Continue genetic studies on drought tolerance in Andean beans and canning quality of black beans
Impacts
What was accomplished under these goals?
The MSU dry bean breeding and genetics program conducted 14 yield trials in 2016 in ten market classes and participated in the growing and evaluation of the Cooperative Dry Bean, Midwest Regional Performance, National Drought and the National Sclerotinia Nurseries in Michigan and winter nursery in Puerto Rico. The nurseries were planted in June 2016 into favorable soil moisture conditions. Weather during the early growing season was dry and hot and beans were under considerable stress during the critical flowering period. Rainfall in August resulting in plants re-greening and setting a double crop that reflected in lower yields and necessitated chemical desiccation in commercial fields. Selection for tolerance to drought stress during the extended dry period was possible in all nurseries based on performance under these conditions. GGE biplots were used to rank genotypes according to environments and treatments (irrigated and rainfed) within environments. A genotype-by-trait analysis was also used to identify traits relevant to yield under rainfed and irrigated environments. Significant differentiation and non-redundancy was found among the environments suggesting that resource use is efficient. Rainfed environments were better at discriminating high performing genotypes in Michigan. Genotype by trait analysis showed a significantly negative correlation between growth habit and seed yield. A common feature of the better adapted and higher yielding genotypes under Michigan conditions was the upright type II growth habit. A number of root architecture traits such as taproot diameter were independent or associated with yield in common bean under different environments. Genotypes with contrasting traits associated with yield under rainfed and irrigated conditions were identified and could be used in the development of future common bean cultivars with improved drought tolerance. A composite linkage map was constructed using single nucleotide polymorphism (SNP) markers from the three populations and resulted in an improved version of the individual linkage maps, shown by a greater genome span covered in the composite map (909 cM). A number of QTL of different size effects were identified for seed yield (R2=15.4 to 30.7%), seed size (R2=16.4 to 20.2%), days to flowering (R2=12.4 to 36.1%), days to maturity (R2=16.2%), lodging score (R2=10.3 to 12.9%) and canopy height (R2=17%). Our study confirmed previously reported QTL on five chromosomes and identified a new QTL for canopy height on Pv10. The use of a composite map and QTL analysis under a NAM population structure increased our ability to detect small effect QTL that were segregating in at least two of the populations, but would not have been detected using individual linkage maps. A machine vision system was implemented and tested for automatic inspection of color (COL) and appearance (APP) in canned black beans. Various color and textural image features were extracted from drained/washed beans and brine images, and evaluated to predict the quality rates for COL and APP of a group of bean panelists using multivariate statistical models. A total of 69 commercial canned black bean samples from different brands and markets were used for analysis. In spite of the 'fair' agreement among the sensory panelists for COL and APP, as determined by multirater Kappa analysis, a machine vision data based on partial least squares regression analysis showed high predictive performance for both COL and APP with correlation coefficient for prediction (R_pred) of 0.937 and 0.871, respectively. When a classification was performed based on both COL and APP traits, a support vector machine model using simple image data was able to sort the canned bean samples into two sensory quality categories of 'acceptable' and 'unacceptable' with an accuracy of 89.7%. Using simple color and texture image data, a machine vision system showed potential for the automatic evaluation of canned black beans by COL or/and APP as a professional visual inspection. The impact of extrusion cooking on the chemical composition and functional properties of bean powders from four bean varieties was investigated. The raw bean powders were extruded under eight different conditions, and the extrudates were then dried and ground (particle size ≤ 0.5 mm). Compared with corresponding non-extruded (raw) bean powders (particle size ≤ 0.5 mm), the extrusion treatments did not substantially change the protein and starch contents of the bean powders and showed inconsistent effects on the sucrose, raffinose and stachyose contents. The extrusion cooking did cause complete starch gelatinization and protein denaturation of the bean powders and thus changed their pasting properties and solvent-retention capacities. The extrusion cooking did not alter the starch digestibility of the bean powders. The extruded bean powders displayed functional properties similar to those of two commercial bean powders.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
1. Ai, Y., K A. Cichy, J. B. Harte, J. D. Kelly, and P. K.W. Ng. 2016. Effects of extrusion cooking on the chemical composition and functional properties of dry bean powders. Food Chemistry 211:538545. doi:10.1016/j.foodchem.2016.05.095
2. Hoyos-Villegas, V., E. M. Wright and J.D. Kelly. 2016. GGE biplot analysis of yield associations with root traits in a Mesoamerican bean diversity panel. Crop Sci. 56:1081-1094. doi:10.2135/cropsci2015.10.0609
3. Hoyos-Villegas, V., Q. Song, E.M. Wright, S. E. Beebe and J.D. Kelly. 2016. Joint linkage QTL mapping for yield and agronomic traits in a composite map of three common bean RIL populations. Crop Sci. 56: doi:10.2135/cropsci2016.01.0063.
4. Isaacs, K.B., S.S. Snapp, J.D. Kelly and K. R. Chung. 2016. Farmer knowledge identifies competitive bean ideotype for maize-bean intercrop systems in Rwanda. Agriculture & Food Security 5:15. doi 10.1186/s40066-016-0062-8
5. Kelly, J.D., G.V. Varner, S. Hooper, K.A. Cichy, and E.M. Wright. 2016. Registration of Samurai otebo bean. J. Plant Registrations 10:109-114. doi:10.3198/jpr2015.09.0051crc
6. Mendoza, F.A, J. D. Kelly, and K. A. Cichy. 2016. Automated prediction of sensory scores for color and appearance in canned black beans (Phaseolus vulgaris L.) using machine vision. International Journal of Food Properties, doi:10.1080/10942912.2015.1136939.
7. Moghaddam, S.M., S. Mamidi, J. M. Osorno, R. Lee, M. Brick, J. Kelly, P. Miklas, C. Urrea, Q. Song, P. Cregan, J. Grimwood, J. Schmutz, and P. E. McClean. 2016. Genome-wide association study identifies candidate loci underlying agronomic traits in a Middle American diversity panel of common bean. The Plant Genome 9: doi: 10.3835/plantgenome2016.02.0012
8. Nakedde, T., F. J. Ibarra-Perez, C. Mukankusi, J. G. Waines, and J. D. Kelly. 2016. Mapping of QTL associated with Fusarium root rot resistance and root architecture traits in black beans. Euphytica doi: 10.1007/s10681-016-1755-6
9. Zuiderveen, G.H., B. A. Padder, K. Kamfwa, Q. Song and J. D. Kelly. 2016. Genome-wide association study of anthracnose resistance in Andean beans. PLoS ONE 11(6): e0156391doi:10.1371/journal.pone.0156391
Non-refereed Publications:
1. Acosta-Gallegos, J.A., Y. Jim�nez Hern�ndez, V. Montero Tavera1, M. A. Mart�nez Gami�o, M. D. Herrera, J. L. Anaya L�pez, and J.D. Kelly. 2016. Release of pinto Raramuri dry bean for the semi-arid highlands of Central Mexico. Bean Improvement Cooperative Annual Report 59:253.
2. Berry, M., Wiesinger, J, Nchimbi-Msolla, S, Miklas, P, Porch, T, Fourie, D, and Cichy, K. 2016. Breeding for a fast cooking bean: a study of genotypes across environments to determine stability of the cooking time trait in Phaseolus vulgaris. Bean Improvement Cooperative Annual Report 59:33-34
3. Chilvers, M.I., J.L. Jacobs, A.M. Byrne, and J.D. Kelly. 2016. Screening Andean dry bean germplasm for root rot resistance. Bean Improvement Cooperative Annual Report 59:105-106.
4. Cichy, K.A. and F. Mendoza. 2016. Color retention in canned black beans. Bean Improvement Cooperative Annual Report 59:25-26.
5. Zuiderveen, G.H., B. Padder, K. Kamfwa and J. D. Kelly. 2016. Mapping the Co-1 locus conditioning anthracnose resistance in common bean. Bean Improvement Cooperative Annual Report 59:17-18.
|
|