Progress 10/31/14 to 08/10/17
Outputs Target Audience:I gave several research seminars related to the project. I was an invited speaker at the Meiosis Gordon Research Conference in New London New Hampshire. This is the most important international conference for my field of research. A large focus of research in this group is the study of mechanism of aneuploidy which is a fundamental process of reproductive health that impacts humans livestock and plants and fisheries. This work was also presented at the Genetics Society of America Annual Zebrafish meeting. Over the review period I gave invited research seminars in the US, including Indiana University, the National Institutes of Health, and the Stowers Institute in Kanas City MO; three institutions in Japan, including University of Tokyo, the Nara Institute of Science and Technology and Osaka University; seminar at Otago University in New Zealand where I did a six month sabbatical to learn about zebrafish model, and to undergraduate students at Xavier University of Louisiana and two Land Grant institutions that are also Historically Black Colleges and Universities, including the University of Maryland Eastern Shore and Florida A&M University. In June 2017 I presented a talk for a lay audience as part of the Science Cafe series in Davis CA. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?During the period of review I have trained two postdoctoral fellows, two graduate students, two technicians, one senior research associate and nine undergraduate students. This summer I hosted a student from Xavier University of Louisiana as part of the Molecular and Cell Biology Graduate Admissions Pathway under the University of California initiative to bring students from Historically Black Colleges and Universities to UC Davis for a summer research program, for which I am the lead PI. I am also the faculty mentor to a student in the NIH funded PREP program and he plans to apply to UC Davis in the fall and continue his research on this project. How have the results been disseminated to communities of interest?Hinjosa, Xiong 2016; Martinez, Chu 2015. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
The goals of the project were to 1) Determine the frequency of chromosome aneuploidy in male versus female zebrafish; 2) test if mutations that disrupt meiotic chromosome architecture differentially sensitize males versus females for chromosome segregation errors; and 3) to determine if known genotoxic agents differentially affect males versus female gametogenesis. For aim 1 we created a chromosome spread procedure to count the number of chromosomes in metaphase cells isolated from zebrafish embryos. As a first step, we compared chromosome numbers in embryos from mutant mothers with a deletion in the spo11 gene and from wild type mothers. Since spo11 fails to make DNA double-strand breaks, the initiating event of meiotic recombination, our expectation was that chromosome missegregation events would be greater in spo11 mothers. We found a dramatic and significant difference in chromosome number in embryos from the spo11-/- mothers. Moreover, embryos with the incorrect numbers of chromosomes show severe developmental defects. Interestingly, while the spo11-/- mothers were fertile, the males failed to make sperm entirely. We investigated the molecular basis for the sexually dimorphic phenotype and found that early chromosome events of meiosis, including telomere associations, clustering of telomeres in to the bouquet, and the formation of chromosome axes were similar in wild type and in spo11 males and females. In both male and female spo11 mutants, chromosomes failed to undergo synapsis and pair homologous chromosomes. We further characterized the male meiosis to find at which stage the development of spermatocytes arrested. By staining whole mount testis with antibodies to the germline marker, Vasa, and the DNA staining dye, DAPI, we found an increased population of cells in metaphase suggesting that in the absence of Spo11 spermatogenesis halts in metaphase I. These results show that the cause of cell cycle arrest in males is not present in females or, alternatively, a more stringent checkpoint operates in males that prevents the formation of aneuploid sperm. With a new R01 grant awarded to my lab from the NIH, we are continuing these studies to measure chromosome aneuploidy in defective embryos from crosses involving wild type males and females. Our preliminary studies show that these events are very rare, so collecting sufficient numbers of embryos with developmental delays has been challenging. With these new funds, we can train undergraduates to continue to set up matings to score progeny for developmental defects and aneuploidy. Aim 2) We next focused on meiotic defects in males and females carrying mutations in genes known to be involved in chromosome axis structure. To this end we created a deletion mutation in the meiosis-specific cohesin, rad21l1. Rad21L1 has been shown previously in mouse to be required for spermatogenesis. Surprisingly, in zebrafish, rad21l1 mutant males are fertile and give very few offspring with developmental abnormalities, similar to wild type. The dramatic difference in the rad21l1 mutant phenotype between mouse and zebrafish, along with the fact that zebrafish synapsis more resembles human males compared to mouse, suggests that mouse may not be a reliable model for human meiosis. Interestingly, rad21l1-/- homozygous females are absent among progeny from a cross between heterozygous males and females, i.e. rad21l1+/-. Further inspection reveals that oogenesis fails. In zebrafish, oogenesis is required for female development and the fish develop into males (zebrafish do not have sex chromosomes). Again, differences between the mouse and zebrafish phenotypes suggest that sexually dimorphic features of gametogenesis may not be conserved among vertebrates. Aim 3) Given the fact that different mutations have different affects in males versus females, we next explored if the failure to repair DNA double strand breaks resulted in different phenotypes in males and females. To test this, we obtained mutant fish with a mutation that disrupts the mnd1 gene. Surprisingly, mnd1-/- zebrafish males can be recovered from a heterozygous incross but not females. This is similar to what we observed for the rad21l1 phenotype. These results support two conclusions: first, mnd1-/- is not required for viability, and second, mnd1 appears to be required for female development, perhaps due to a defect in oogenesis. Analysis of intact testes showed that the fish could make sperm, yet fertilization was dramatically reduced. To test if the mnd1-/- fish are defective for repairing DSBs we stained whole-mount testis with the DSB marker gamma-H2AX. Preliminary results suggest that the fraction of meiotic cells with DSBs may be higher than in wild type, suggesting a defect in repair. We are currently testing if the sperm contain unrepaired DSBs and this is the cause of infertility. Our next step is to irradiate spo11 fish to create exogenous DSBs and assay if these breaks are repaired and if they can rescue the meiotic arrest in spo11 mutant males by visualizing the distribution of cells types (i.e. sperm) in the testis. Simultaneously, we will test if exogenous DSBs can rescue developmental delays in embryos from spo11 mothers by decreasing the level of aneuploidy. In contrast to the zebrafish mutant phenotypes, male mice that carry defective copies of mnd1 fail to repair DSBs and fail to make sperm or eggs. This difference again highlights differences between mouse and zebrafish. Because the steps leading to synapsis and pairing are more similar between zebrafish and humans, we propose that zebrafish may be a better model for human biology than mouse. Future directions: Our data indicate that zebrafish is an excellent model organism to explore the roles of chromosome dynamics in promoting proper chromosome segregation. In humans, chromosome missegregation in meiosis is the leading cause of birth defects and mental retardation in humans (e.g. trisomy 21 that leads to Down Syndrome. Recent analysis of transcriptomes in individual cells in the male testis in Bruce Draper's lab has revealed a list of previously unannotated genes that may play a role in meiosis. The ease of creating new mutations in zebrafish, the recovery of hundreds of progeny in a single cross, and the easily accessible and transparent gonads make zebrafish and excellent model for gene discovery and rapid analysis of mutant phenotypes.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2017
Citation:
Chu DB, Gromova, T, Newman, AC, and Burgess SM. The nucleoporin Nup2 contains a meiotic-autonomous region that promotes the dynamic chromosome events of meiosis. Genetics 206(3): 1319-1327.
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Progress 10/01/15 to 09/30/16
Outputs Target Audience:Our research focuses on the molecular mechanisms underlying reproductive health. The research carried out under the California Agricultural Experiment Station is greatly enhanced by close contact with animal and plant breeders at the UC Davis campus. Many of these researchers are members of the UC Davis Integrative Genetics and Genomics graduate group where I am the master academic advisor. In this role I have many chances to discuss our work with other AES members and learn about their students' progress. I have a clear pulse on both the basic science and Experiment station specialists. Over the review period I gave several research seminars that focus of the molecular mechanisms leading to aneuploidy and compromising reproductive health. I was an invited speaker at the Meiosis Gordon Research Conference in New London New Hampshire. This is the most important international conference for my field of research. A large focus of research in this group is the study of mechanism of aneuploidy which is a fundamental process of reproductive health that impacts humans livestock and plants and fisheries. This work was also presented at the Genetics Society of America Annual Zebrafish meeting. I gave eight invited research seminars this year. One at Indiana University on our work on the use of budding yeast as a sentinel model organism for studying mechanism involved in maintaining correct ploidy during sexual reproduction, one at the National Institutes of Health on the use of zebrafish as model genetic organism to study reproductive health and mechanisms that lead to aneuploidy. I gave three presentations to undergraduate students at Xavier University of Louisiana and two Land Grant institutions that are also Historically Black Colleges and Universities, including the University of Maryland Eastern Shore and Florida A&M University. I also presented our work at the National Institutes of Health and three institutions in Japan, including the University of Tokyo, the Nara Institute of Science and Technology and Osaka University. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided?Dr. Trent Newman published a paper on diet and impact on reproductive health in zebrafish on work he did as a graduate student in the lab of Julia Horsfield at the University of Otago in New Zealand. While he was in my lab I read drafts of the manuscript and mentored him through the submission and revision process. This paper was published this year in PLoS One. Trent also wrote the first draft of the pilot grant we submitted on the effects of Atrazine on reproductive health in zebrafish. In addition, I am the PI on a three-year grant awarded by the University of California Office of the President Graduate Admissions Pathways Initiative for students from Historically Black Colleges and Universities. I have established partnerships with the University of Maryland Eastern Shore, Florida A&M University and Xavier University of Louisiana. This program will bring 6 African American students for a 10-week summer research and enrichment program with the goal that they will apply for graduate study at the University of California. I traveled to each of these institutions for recruitment and will have one student work in my lab this summer. I also train four undergraduates in my lab who work on projects relevant to reproductive health and aneuploidy. How have the results been disseminated to communities of interest?Dr. Newman has attended several meetings to present his work including American Society of Cell Biology meeting in San Francisco and . My graduate Yana Blokina, a graduate student in my lab presented a poster at the Genetics Society of America Zebrafish meeting in July 2016 in Orlando FL where I also gave a poster on the use of zebrafish as a new model organism to study sexually dimorphic features of germ cell formation in this species. What do you plan to do during the next reporting period to accomplish the goals?We plan to initiate experiments to study the effects of Atrazine on the reproductive health on reproduction in zebrafish. Atrazine is a potent endocrine disrupter and interferes with hormonal activity of animals and humans at extremely low doses. I will actively seek opportunities to for outreach at the K-12 and community level.
Impacts What was accomplished under these goals?
We have submitted a grant to the UC Davis Core Center for Environmental Health Sciences Pilot Projects Program entitled Epigenetic changes in the germline following exposure to the pesticide atrazine. The pesticide atrazine is a common environmental contaminant capable of impairing reproductive processes. This proposal will determine the mechanism of atrazine toxicity by analyzing gametogenesis in the zebrafish. Zebrafish are a useful model for toxicology studies due to the ease delivering toxicants via the water and the large numbers of externally developing offspring that they produce. Our work focuses on the reproductive consequences of atrazine exposure with changes in cellular metabolism. The metabolic pathways that are altered following atrazine exposure will inform us about the cellular processes affected by this toxicant. We will also analyze the impact of atrazine exposure on the conformation of the DNA in the germline by detecting covalent modifications made to the DNA. It is possible that epigenetic changes in the germline could mediate generational consequences of pesticide exposure. To gain insight into how the aberrant cellular processes develop during gametogenesis we will develop an innovative ex vivo gonad culture system that will allow cell of interest to be studied at specific stages. This system will also allow us to minimize exposure of live animals to the pesticide and could improve our understanding of the role of the endocrine system in pesticide toxicity. The integration of this novel approach to reproductive toxicity with new molecular technologies will allow for improved understanding normal and abnormal gametogenesis and inheritance. The tools built in this proposal and the knowledge gained from the results could on day help to shape environmental policy and improve the health and safety of local communities.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Chu DB, Burgess SM. A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae. G3 (Bethesda). 2016 Jan 8. pii: g3.115.024380.
- Type:
Journal Articles
Status:
Published
Year Published:
2015
Citation:
Schuster K, Leeke B, Meier M, Wang Y, Newman T, Burgess S, Horsfield JA. A neural crest origin for cohesinopathy heart defects. Hum Mol Genet. 2015 Dec 15;24(24):7005-16.
- Type:
Journal Articles
Status:
Published
Year Published:
2016
Citation:
Newman and Horsfield JA. Dietary intake influences adult fertility and offspring fitness in zebrafish. PLoS One 2016 11(11) e01663941(11).
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Progress 10/31/14 to 09/30/15
Outputs Target Audience: Our research focuses on the molecular mechanisms underlying reproductive health. The research carried out under the California Agricultural Experiment Station is greatly enhanced by close contact with animal and plant breeders at the UC Davis campus. Many of these researchers are members of the UC Davis Integrative Genetics and Genomics graduate group where I am the master academic advisor. In this role I have many chances to discuss our work with other AES members and learn about their students' progress. I have a clear pulse on both the basic science and Experiment station specialists. I also regularly participate in high school outreach by helping to conceive and write lesson plans, serving on various career panels when requested and mentoring high school students in my lab. UC Davis is surrounded by a rich agricultural industry in which these students' families are economically invested. Thus my outreach to K-12 students opens their eyes to opportunities to enter college-level STEM programs. During my sabbatical I served as a visiting professor at the University of Otago, Department of Pathology, Dunedin New Zealand from 01/01/2015-6/29/2015. Here I established an important collaboration with a Dr. Julia Horsfield to study the role of cohesin proteins in meiosis in zebrafish. I made many important contacts in New Zealand to help move our research forward. I recruited two New Zealand postdocs who are now currently working in my lab at UC Davis. In 2015 I gave research talks at several institutions including the Stowers Institute in Kansas City MO, University of California Davis, Nara Institute of Science and Technology in Japan, the University of Otago in Dunedin New Zealand and the University of Indiana. My student Yana Blokina presented her work at the EMBO conference at St. Catherine's College in Oxford England and the Northern California Zebrafish meeting at UCSF. I have sponsored under-represented minority students who have presented their work at UC Davis, and the Annual Biomedical Research Conference for Minority Students in Seattle, WA and the Biophysical Society Annual Meeting in San Francisco, CA. Changes/Problems:There have been no changes other than branching out to include as a vertebrate model. This work is funded by a supplement to my current NIH R01 grant. What opportunities for training and professional development has the project provided?Yana Blokhina is a Ph.D. candidate in the Integrative Genetics and Genomics graduate group at UC Davis. She has been working full time on studying chromosome aneuploidy rate in male versus female zebrafish. Her estimated graduation date is June 2017. Hester Roberts and Trent Newman are two postdocs recruited to work on the projects. Hester has been analyzing meiotic chromosome architecture and Trent is developing tools to study the real-time chromosome events of meiosis in cultured cells. Over the past year there have been four undergraduate students working on the project. The undergraduates are trained by Yana and the post-docs. There has also been on rotation student who carried out a bioinformatics approach to discovering the sites initiating homologous recombination in zebrafish males and females. How have the results been disseminated to communities of interest?I or my students have presented our findings at several national and international meetings as listed above. What do you plan to do during the next reporting period to accomplish the goals?I will present our findings to the Gordon Research Conference on Meiosis in New London New Hampshire in June 2016 and at the Genetics Society of America conference in Orlando Florida in July 2016. I will also give a talk at the National Institutes of Health in October 2016. We are planning to submit our first manuscript on chromosome aneuploidy by summer 2016.
Impacts What was accomplished under these goals?
Both animal husbandry and crop breeding depend on the reproductive health of organisms. One key feature of gametogenesis is the proper pairing and segregation of chromosomes during meiosis to form sperm and eggs in animals, gametophytes in plants and spores in fungi. Chromosome missegregation creates aneuploid gametes carrying the wrong numbers of chromosomes and is the leading cause of birth defects and mental retardation in humans and spontaneous abortion in animals. Interestingly, chromosome missegregation during meiosis occurs at higher rates in females while infertility is more likely to occur in males. To better understand these sex-specific "weak links" we use zebrafish because of its wide use as a model genetic organism and because of the economic importance of fish as a source of protein for feeding humans and livestock. The use of model genetic organisms over the last century has been critical in understanding the biology of reproductive health. Through our preliminary experiments we have identified mutations that sensitize females to form aneuploid embryos, while leaving males fertile. Another mutation we are studying causes females to undergo sex reversal and develop into fertile males. Clearly, these types of mutations could mimic the effects of exposure to genotoxic agents found in fertilizers, food storage containers and industrial waste products. The sensitivity of the fish also makes them a good candidate for characterizing the impact of climate change on reproductive health. Misdirection of resources that lead to increases in aneuploidy can have large economic consequences to the agricultural industry.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2015
Citation:
Schuster K, Leeke B, Meier M, Wang Y, Newman T, Burgess S, Horsfield JA. A neural crest origin for cohesinopathy heart defects. Hum Mol Genet. 2015 Dec 15;24(24):7005-16.
- Type:
Journal Articles
Status:
Awaiting Publication
Year Published:
2016
Citation:
Chu DB, Burgess SM. A Computational Approach to Estimating Nondisjunction Frequency in Saccharomyces cerevisiae. G3 (Bethesda). pii: g3.115.024380.
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