Progress 10/01/12 to 09/30/16
Outputs Target Audience:The target audiences include scientists, policy makers and citizens concerned about the environment. Changes/Problems:The overall goal of this project was to further our understanding of human impacts on our nation's water supply and the organisms that live in the water. In addition to working with the EPA to develop standard operating procedures for the vitellogenin expression assay, we worked on two projects investigating 1) human impacts on DNA methylation in bonefish (Albula spp.), and 2) impacts of global warming on DNA methylation in brook trout (Salevelinus fontinalis). For both of these projects, the major contribution of my laboratory was to provide the expertise in DNA methylation analysis. DNA methylation was chosen as the optimal biomarker because it is relatively stable and affected by a range of environmental exposures. Project 1. For the analysis of DNA methylation in bonefish we worked with Professor Andy Danylchuk in the Department of Natural Resources Conservation. We introduced Dr. Danylchuk to a non-lethal method of collecting fish blood on filter paper and we optimized method for extraction of the DNA from the fish blood. Dr. Danylchuk collected blood samples from fish in heavily and less impacted regions of the Florida Keys and the Bahamas. We are near completion of the analysis of DNA methylation in these samples and have begun preparation of a manuscript. Project 2. For the analysis of DNA methylation in brook trout, we provided Dr. Tara Duffy with training and access to a pyrosequencer. Dr. Duffy was a Post Doctorate Fellow working with Dr. Stephen McCormick at the S.O. Conte Anadromous Fish Research Laboratory, USGS in Turners Falls, MA. A manuscript describing the results of this study is under review. What opportunities for training and professional development has the project provided?Training opportunities: During the last year one technician and two undergraduate students received training in molecular biology and statistics as a direct outcome of this project. 1. Elizabeth Punska (technician in the Arcaro lab) was trained in methods of extracting fish DNA from filter paper and examining DNA methylation. Ms. Punska also received training in statistical methods and data preparation. 2. Cassidy Cunningham (Biochemistry major, class of 2016) was trained in methods of DNA extraction and in assay development. Ms. Cunningham assisted Dr. Arcaro and Ms. Punska in developing an assay to estimate DNA methylation in bonefish based on pyrosequencing bisulfite-modified DNA that had been amplified for a repetitive element. 3. Oshiomah Oyageshio (Biochemistry major, class of 2018) received training in basic molecular biology techniques including, extraction and purification of DNA, comparison of methods to evaluate DNA quantity and quality, assessment of DNA methylation using pyrosequencing of fragmented DNA after incubation with methylation specific and tolerant enzymes. Mr. Oyageshio also received training in statistics and study design. Professional development: During the last year two undergraduate students participated in activities related to this project that enhanced their professional development. 1. Cassidy Cunningham presented the results of her research on bonefish and the Massachusetts Undergraduate Research Symposium in April 2016. 2. Oshiomah Oyageshio presented results from his research at a meeting of Dr. Arcaro's colleagues. How have the results been disseminated to communities of interest?During the last year we have taken steps towards disseminating results to communities of interest by submitting two manuscripts for publication (presently under review), and preparing a third manuscript for submission. What do you plan to do during the next reporting period to accomplish the goals?
Nothing Reported
Impacts What was accomplished under these goals?
It is well known that human activities are impacting the quality of our water supply by releasing estrogenic compounds into the environment. Exposure to these estrogens has the potential to disrupt reproduction in aquatic animals as well as humans, and may be linked to other health problems. Because environmental estrogens can dispute the function of natural estrogens in the body's endocrine system, they are referred to as endocrine disrupting compounds (EDCs). Complex mixtures of EDCs can enter the environment from wastewater treatments plants, biosolids runoff, and concentrated animal feeding operations, among other human operations. Monitoring and limiting the release of EDCs is a major goal of regulating agencies, however, the complexity of the EDC mixtures makes chemical analysis an unreasonable solution for monitoring environmental inputs. Fish bioassays have been embraced as sensitive and cost effective solution to assessing the estrogenic potential of wastewater and runoff. However, challenges remain because standardized methods of using fish bioassays to quantify estrogenic activity have not been developed. The lack of standardization complicates interpretations among laboratories participating in screening programs. We collaborated with USEPA regions 5, 8 and ORD to standardize methods of assessing the egg yolk precursor protein, vitellogenin, as a biomarker of estrogen exposure in male fish. We assisted in the development of a standard operating procedure (SOP) to evaluate vitellogenin gene (vtg) expression. The SOP was applied to samples collected from studies of male fathead minnows (Pimephales promelas) exposed to 17α-ethinylestradiol (EE2) and minnows exposed to processed wastewater effluent. Variability in gene expression among four laboratories was assessed. Results indicated reasonable consistency among laboratories if LinRegPCR expression analysis was used, with three of four detecting vtg in fish exposed to 5 ng/L EE2 (n = 5). All laboratories significantly detected vtg in male fish exposed to wastewater effluent (n = 15). Finally, the source of high inter-laboratory variability from cDNA to qPCR analyses was determined to be the expression analysis software unique to each real-time quantitative polymerase chain reaction (qPCR) machine. Reanalyzing raw fluorescence data with independent freeware eliminated the inter-laboratory variability. A manuscript describing the results i sunder review.
Publications
- Type:
Journal Articles
Status:
Under Review
Year Published:
2017
Citation:
MS Title: Tools to Minimize Inter-Laboratory Variability in Vitellogenin Gene Expression Monitoring Programs
MS Authors: Denise A. Gordon, Aaron Jastrow, Kasie M. Auger, Elizabeth C. Punska, Kathleen F. Arcaro, Kristen Keteles, Dana Winkelman, David Lattier, Adam Biales, James M. Lazorchak
- Type:
Journal Articles
Status:
Under Review
Year Published:
2017
Citation:
MS ID#: JEXBIO/2016/155283
MS TITLE: Epigenetic and physiological changes following acclimation to high temperatures in brook trout (Salvelinus fontinalis): evidence for a thermal memory
AUTHORS: Tara Duffy, Kathleen Arcaro, and Stephen McCormick
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Progress 10/01/12 to 09/30/13
Outputs Target Audience: The primary target audiences included students at the Univeristy of Massachusetts and students and faculty attening the national meeting of the Society of Environmental Chemistry and Toxicology. Changes/Problems:
Nothing Reported
What opportunities for training and professional development has the project provided? Kasie Auger, a graduate student in the Animal Biotechnology Program received her masters degree. Her reserach was based on this NIFA-fundedproject. Dr. Tara Duffy, a postdoctoral fellow at the USGS Anadromous Fish Labortatory at Turnes Falls, MA, conducted part of her research in the Arcaro laboratory using supplies and equipmentobtianed through this NIFA-funded project. Dr. Sangram Parelkar, a postdoctoral fellow in the Polymer Science Department at UMass-Amhers, conducted part of his research in the Arcaro laboratory using supplies and equipmentobtianed through this NIFA-funded project. Dr. Kathleen Arcaro provided guidance and training to Kasie Auger and Drs. Duffy and Parelkar. How have the results been disseminated to communities of interest? Results have been presented at two national meetings and will be presented at another meeting in January 2014. What do you plan to do during the next reporting period to accomplish the goals? We are working with Dr. David Reckhow in Environmental Engineering to collect and analyze water sampels after flood events.
Impacts What was accomplished under these goals?
We have made significant progress on goals 1 and 5. Goal 1. We have tested water mulitple in-streamlocations and effluents and a manuscript is in prepartion. Goal 5. We have worked with the EPA to develop standarized protocls for assesing estrogenic activity; a protocol has been submitted and a manuscript is in preparation.
Publications
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2013
Citation:
A whole-effluent toxicity method for estrogenic wastewater and inter-laboratory comparisons from mesocosm, laboratory, and field exposures. Authors: Adam R. Schwindt, Aaron Jastrow, Denise Gordon, Kathleen Arcaro, Kasie Auger, Kristen Keteles, Dana Winkelman, and James Lazorchak
Presentation at the 2013 Annual Meeting of the Society of Environmental Toxicology and Chemistry, Nashville TN
- Type:
Theses/Dissertations
Status:
Other
Year Published:
2013
Citation:
INVESTIGATING THE ENDOCRINE DISRUPTING POTENTIAL OF THE EFFLUENT-DOMINATED ASSABET RIVER; A Thesis Presented By KASIE M. AUGER; April, 2013. University of Massachusetts
- Type:
Conference Papers and Presentations
Status:
Other
Year Published:
2014
Citation:
Poster presentation at the Annual Meeting of The Society for Integrative and Comparative Biology, January 3-7, 2014 at Austin, Texas. DNA methylation in brook trout (Salvelinus fontinalis) following acclimation to thermally stressful environments. Tara A. Duffy, Kathleen Arcaro and Stephen D. McCormick
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Progress 10/01/11 to 09/30/12
Outputs OUTPUTS: NEW PARTICIPANTS: Nothing significant to report during this reporting period. TARGET AUDIENCES: Nothing significant to report during this reporting period. PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.
Impacts NEW
Publications
- No publications reported this period
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