Source: Intralytix, Inc. submitted to
PHAGE PREPARATION FOR MANAGING SALMONELLA IN FOODS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0230175
Grant No.
2012-33610-19947
Cumulative Award Amt.
$449,865.00
Proposal No.
2012-02155
Multistate No.
(N/A)
Project Start Date
Sep 1, 2012
Project End Date
Aug 31, 2014
Grant Year
2012
Program Code
[8.5]- Food Science & Nutrition
Recipient Organization
Intralytix, Inc.
701 E. Pratt St
Baltimore,MD 21202
Performing Department
(N/A)
Non Technical Summary
Salmonellae continue to be one of the leading worldwide causes of foodborne bacterial diseases. They cause 1.2-1.4 million annual cases of salmonellosis in the USA, with associated costs estimated to be as high as $12.8 billion/year (in 1998 dollars). Despite continued and escalating efforts to curb diseases caused by foodborne bacterial pathogens, salmonellae continue to produce foodborne illness at an alarming and increasing rate. In this context, although the overall incidence of foodborne diseases has been declining in the United States, the 2010 report from the FoodNet indicated that the incidence of laboratory-confirmed Salmonella infections continued to increase by approximately 3%, causing 1.2 million U.S. illnesses in that year and being the most common cause of hospitalization and death tracked by the FoodNet. In fact, the incidence of Salmonella-elicited disease during 2010 was nearly 3-fold more than the 2010 national health objective target, and current outbreaks of salmonellosis continue to occur on a regular basis. Moreover, in a disturbing recent development, a Salmonella Typhimurium strain isolated from contaminated ground beef (which was implicated in a multistate outbreak during the fall of 2011) was found to be resistant to several commonly prescribed antibiotics. This is an alarming development because disease caused by such multidrug-resistant strains is associated with an increase in the risk of hospitalization or possible treatment failure in infected individuals. This finding, together with the continuing increase in the incidence of salmonellosis in the United States despite current efforts to curtail that disease, underscores the importance of developing novel intervention strategies and products capable of eliminating or significantly reducing Salmonella in various foods without promoting the emergence of antibiotic-resistant mutants. Any such products should be effective, cheap, safe, environmentally friendly, and easy to use - and there would also be potential advantages for products that target specific Salmonella serotypes; e.g., serotypes predominantly associated with human illness. We believe that a bacteriophage-based preparation/approach may be one such modality. With the partial support from the NIFA USDA Phase I grant, we developed a bacteriophage-based preparation (designated "SalmoFresh") lytic for Salmonella. During our preliminary studies, we found that SalmoFresh consistently and significantly reduced Salmonella levels in various poultry products by as much as 98%. The goals of our currently proposed Phase II project are to (i) obtain additional data concerning the efficacy of SalmoFresh treatment of various foods that are at high risk of Salmonella contamination, and (ii) obtain pertinent regulatory approvals that will enable us to make SalmoFresh available to the food industry and, thus, help to reduce foodborne contamination with Salmonella. We believe that SalmoFresh has the potential to help significantly reduce Salmonella contamination of various foods (including poultry products) and, therefore, to have a significant impact on improving food safety and public health.
Animal Health Component
60%
Research Effort Categories
Basic
10%
Applied
60%
Developmental
30%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
71250101100100%
Goals / Objectives
The goal of this Phase II project is to obtain pertinent regulatory approvals enabling us to commercialize a bacteriophage-based product (designated "SalmoFresh") which we developed, in part, using support provided by a recent Phase I grant from the National Institute of Food and Agriculture (NIFA)-USDA. SalmoFresh is an all-natural, multivalent, phage-based preparation that, with proper use, has the potential to eliminate or significantly reduce Salmonella contamination of poultry products and other foods. The proposal is being submitted to address Topic Area 8.5 ("Food Science and Nutrition"), a component of one of the 5 research areas ("Food Safety") identified, by the NIFA-USDA, as a high priority for FY2012 grant applications. SalmoFresh is envisioned as a commercial product that can be applied directly onto the surfaces of various foods that are at high risk of Salmonella contamination, in order to eliminate or significantly reduce that contamination and make the foods safer for consumption. Our regulatory approval strategy would be to have SalmoFresh cleared as generally-recognized-as-safe (GRAS) for direct applications on all "targeted foods." Subsequently, we will link the product with a service component which will monitor product efficacy (including factors such as the development of resistance to any of its component monophages), optimize and customize phage administration, and assist producers with their efforts to control Salmonella contamination. We believe that the studies proposed in this Phase II SBIR application are well focused and realistic, and that the necessary highly experienced researchers are in place. Therefore, we fully anticipate successfully completing all proposed studies during the time frame allocated to the project. We will proceed by addressing the following three specific aims: Specific Aim #1: Develop and validate the optimal production protocol for SalmoFresh, and prepare at least three experimental lots of SalmoFresh needed to (i) validate the protocol and the product's consistency, and (ii) perform efficacy studies. Specific Aim #2: Perform studies designed to determine SalmoFresh's dosing protocol required for optimally reducing Salmonella contamination of various high-risk foods. Specific Aim #3: Prepare a generally-recognized-as-safe (GRAS) application package for SalmoFresh and submit it to the Food and Drug Administration.
Project Methods
Our proposed project focuses on the development and eventual commercialization of a new product, SalmoFresh, whose active ingredients are naturally occurring, lytic bacteriophages with strong bactericidal activity against selected, "highly pathogenic" serotypes of Salmonella. The approach of using SalmoFresh is based on adding the appropriate concentration of lytic Salmonella bacteriophages directly onto the surfaces of raw poultry products or other foods that are at high risk of Salmonella contamination just before they are sliced and/or packaged. The rationale is that if the foods are contaminated with Salmonella, the phages will eliminate or significantly reduce the concentrations of the bacterium on/in the foods, thus making them safer to eat. The basic concept behind the proposed product and the approach itself is to re-introduce naturally occurring phages back to the foods where they may have come from in the first place; i.e., adding the right phage, in the right concentration, to the right place. Our regulatory approval strategy would be to have SalmoFresh cleared as generally-recognized-as-safe (GRAS) for direct applications on all targeted foods. In keeping with this strategy, the methods we propose to use during our Phase II studies are directly focused on achieving this objective. Specifically, we will use standard methods to (1) Develop and validate the optimal production protocol for SalmoFresh, (2) Perform additional studies to determine optimal dosing protocols for eventual commercial product. The efficacy of SalmoFresh treatment will be determined by an (i) enumeration test (during which the levels of Salmonella in foods is determined), and (ii) enrichment-detection test (during which the presence or absence of Salmonella is determined). One-way analysis of variance (ANOVA) and Tukey-Kramer multiple comparisons tests will be used to determine whether treatment with SalmoFresh significantly reduced the number of viable Salmonella on food surfaces contaminated with the test strain. In the enrichment-detection tests, SalmoFresh treatment will be considered effective if the tests reveal significantly more Salmonella-free specimens in the phage-treated group than in the phage-untreated control group treated only with sterile saline or PBS. In the enumeration tests, the treatment will be considered effective if the concentrations of the Salmonella in the phage-treated specimens are significantly lower than in those treated only with sterile saline or PBS. Based on our experience in working with bacteriophages in general, and also on the preliminary data we obtained with SalmoFresh, we fully expect that treatment with SalmoFresh will be effective in reducing or eliminating the Salmonella test strain from the foods we include in our analyses. However, these studies will provide us with critical information re the product's efficacy, and with rigorous data concerning the preferential, optimal application/dosing regimen for SalmoFresh for each targeted food, and (3) Prepare a generally-recognized-as-safe (GRAS) application package for SalmoFresh and submit it to the FDA.

Progress 09/01/12 to 08/31/14

Outputs
Target Audience: Intralytix opened up discussions with several new industry partners. These efforts included educating theIndustryPartners on the use of SalmoFresh as a biocontrol agent andassistingin planning experimental use ofSalmoFresh in the production of their poultry products. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? http://intralytix.com/Intral_News.htm What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The goal of specific aim #1 was met and described in the first progress report. The goal of specific aim #2, to perform studies designed to determine the dosing protocol of SalmoFresh on high-risk foods, was continued. Additional studies were performed to complete the various food catergories, including studies on cheese (dairy) and roast beef (red meat). An additional study was performed on chicken, to determine the efficacy of SalmoFresh on poultry that is not intended to be ground. SalmoFresh™ can significantly reduce viable Salmonella levels in experimentally contaminated cheese by ca. 48-72% in 5 minute contact time, when applied at ca. 5x106 – 9x106 PFU/g. SalmoFresh™ can significantly reduce viable Salmonella levels in experimentally contaminated roast beef by ca. 60-88% in 5 minute contact time, when applied at ca. 5x106 – 9x106 PFU/g. SalmoFresh™ can significantly reduce viable Salmonella levels in experimentally contaminated chicken by ca. 60-88% in 5’ minute contact time, when applied at ca. 2x106 – 9x106 PFU/g. With these additional studies, the goal of specific aim #2 was met. The goal of specific aim #3,to prepare a generally-recognized-as-safe (GRAS) application package for SalmoFresh and submit it to the Food and Drug Administration, was accomplished, as described in the first progress report.SalmoFresh is now FDA-listed as GRASfor use as an antimicrobial in certain poultry products, fish, shellfish, and fresh and processed fruits and vegetables(GRN000435) and listed in FSIS directive 7120.1 as a safe and suitable ingredient in the processing of ready-to-eat poultry products prior to slicing, raw poultry prior to grinding, and raw poultry after grinding. The goal of specific aim #3 has been met.

Publications


    Progress 09/01/12 to 08/31/13

    Outputs
    Target Audience: Intralytix continued its discussions with an Industry Partner. These efforts included educating the Industry Partner on the use of SalmoFresh as a biocontrol agent for the reduction or elimination of Salmonella in their poultry products, sharing experimental results, and assisting in the Industry Partner's internal efficacy experiments with SalmoFresh. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? A representative from Intralytix attended the SBIR training workship in Washington D.C in early November 2012. The lectures and workshops were professional development and training experiences. How have the results been disseminated to communities of interest? http://phagesolutions.blogspot.com/2012/09/intralytix-awarded-grant-for-managing.html http://www.intralytix.com/Intral_News_PR022713.htm What do you plan to do during the next reporting period to accomplish the goals? Further studies examining the efficacy of SalmoFresh on other foods categories, such as dairy and red meat, that will allow for it to be listed as GRAS for foods, generally, rather than being limited to use on only certain specific food categories. Once SalmoFresh™ efficacy on other food groups (e.g. red meat and dairy) is completed, a second GRAS notification will be submitted for the use of SalmoFresh™ on foods, generally, to control Salmonella enterica. With this submission, all goals of the Phase II project will be fully met.

    Impacts
    What was accomplished under these goals? The goal of specific aim #1, which was to develop and validate the optimal production protocol for SalmoFresh, and prepare at least three experimental lots of SalmoFresh. The goal of specific aim #1 was met. The optimal fermentor conditions were established for each of the component monophages and triplicate batches of each demonstrated reproducibility of the conditions. Three production lots of SalmoFresh™ were produced and chemically analyzed to demonstrate production reproducibility. The goal of specific aim #2 was to perform studies designed to determine dosing protocol of SalmoFresh™ required for optimally reducing Salmonella contamination of various high-risk foods. Much progress has been made towards accomplishing this goal. Several studies were performed on a variety of foods. SalmoFresh™ significantly reduced the number of viable Salmonella, by ca. 69-86%, when applied to turkey breast trim (9x106 and 2x107 PFU/g) prior to grinding. However, SalmoFresh™ treatment did not have a residual protective effect in the ground meat; i.e., it did not significantly protect the ground turkey meat from subsequent recontamination with Salmonella. SalmoFresh™ significantly reduced the number of viable Salmonella by ca. 80-89%, when applied to cantaloupe at 4x106 or 9x106 PFU/g. SalmoFresh™ significantly reduced the number of viable Salmonella by ca. 80-92%, when applied to tuna at 4x106 or 9x106 PFU/g. SalmoFresh™ significantly reduced the number of viable Salmonella by ca. 92%, when applied to lettuce at 3x107 PFU/g. The goal of specfic aim #3 was to prepare a generally-recognized-as-safe (GRAS), for foods generally, application package for SalmoFresh™ and submit it to the Food and Drug Administration. This was goal was accomplished for the following food categories: poultry, fruits, vegetables, and fish. A GRAS notification package was submitted to both the FDA and USDA to initiate the process of obtaining a SalmoFresh™ GRAS listing and including SalmoFresh™ on the FSIS directive 7120.1 for use of SalmoFresh™ on select foods. A second GRAS notification package will be submitted upon completion of efficacy studies for use of SalmoFresh™ on foods, generally.

    Publications

    • Type: Journal Articles Status: Published Year Published: 2013 Citation: Woolston J, Parks AR, Abuladze T, Anderson B, Li M, Carter C, Hanna LF, Heyse S, Charbonneau D, Sulakvelidze A. Bacteriophages lytic for Salmonella rapidly reduce Salmonella contamination on glass and stainless steel surfaces. Bacteriophage 2013; 3:e25697; http://dx.doi.org/10.4161/bact.25697