Source: NORTH CAROLINA STATE UNIV submitted to
SEASONAL STABILITY OF GENETIC STRUCTURE OF THRIPS TABACI IN RELATION TO DISTANCE, REPRODUCTIVE BIOLOGY AND INSECTICIDE RESISTANCE TRAITS.
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0229681
Grant No.
2012-67012-19757
Cumulative Award Amt.
$130,000.00
Proposal No.
2012-01385
Multistate No.
(N/A)
Project Start Date
Aug 1, 2012
Project End Date
Jul 31, 2014
Grant Year
2012
Program Code
[A7201]- AFRI Post Doctoral Fellowships
Project Director
Jacobson, A. L.
Recipient Organization
NORTH CAROLINA STATE UNIV
(N/A)
RALEIGH,NC 27695
Performing Department
Entomology
Non Technical Summary
Onion thrips feeding damages many vegetable and field crops. They also spread two tospoviruses, Iris yellow spot virus and Tomato spotted wilt virus, which cause over $1 billion in crop losses annually worldwide. Management of onion thrips populations and the plant viruses they spread is of increasing concern due to the development of insecticide resistant populations, and the limited progress that has been made towards decreasing losses due to epidemics of these viruses. Management is potentially confounded by differences observed among population in insecticide resistance, ability to transmit plant viruses, reproductive biology, and ability to reproduce on different host plants. The presence of genetically distinct groups within a species can significantly impact the design, implementation and effectiveness of management programs when the different groups vary in their distribution, propensity to develop insecticide resistant populations, and ability to transmit viruses. One goal of this project is to employ molecular markers to determine if genetic differentiation among onion thrips is due to complex reproductive biology. A second goal is to characterize the effect of spatial isolation on seasonal and yearly changes in genetic variation that exists among and within populations, including changes in the abundance and distribution of genes conditioning resistance to pyrethroid insecticide in onion thrips populations. Ultimately, this project will improve our understanding of the genetic relationships that exist among onion thrips populations. It will provide information about the scale (local or regional) at which insecticide resistance management and tospovirus management plans can be optimally applied to enhance effectiveness and sustainability. This project addresses the AFRI Challenge area of Food Safety and is aligned with the AFRI Foundation area of Plant health and production and plant products.
Animal Health Component
40%
Research Effort Categories
Basic
60%
Applied
40%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2111451107020%
2111451108040%
2111451113040%
Goals / Objectives
The goal of this project is to evaluate the effects of distance and a complex breeding system as potential barriers to gene flow among populations of onion thrips, to monitor seasonal changes of population structure, and to characterize the changes in presence and abundance of an insecticide resistance trait over time in relation to the metapopulation structure of onion thrips populations as determined using molecular markers. Specific objectives are: 1. Characterize species and population level differences that are due to complex reproductive biology and determine whether reproductive mode is a barrier to gene flow; 2. Characterize the seasonal and yearly changes in genetic variation within and among onion onion thrips populations; and 3. Characterize the seasonal and yearly abundance and distribution of pyrethroid insecticide resistance in onion thrips populations. The resulting knowledge of metapopulation structure and gene flow among onion thrips populations as determined by distance and habitat will provide an informed basis for determining the scale over insecticide resistance management plans can be optimally applied to enhance efficacy and sustainability. Results will also inform future studies of thrips-transmitted plant viruses, insect metapopulation structure, population genetics, the spread and persistence of economically important traits in population, and host-plant related population structure.
Project Methods
This study will be conducted in the muck soil onion production systems of New York. These are discrete pockets of high organic soil interspersed throughout the NY landscape; separated by a mosaic of urbanization, forests and field crops. These muck soil production systems represent islands of habitat for onion thrips individuals and are essentially closed cropping systems, due to their isolation. Molecular genetic markers (microsatellites and mitochondrial (COI) will be used to investigate whether gene flow occurs among onion onion thrips populations that are parthenogenetic (female only) and those that produce both male and female offspring). They will also be used to determine if populations are genetically differentiated among mucks; if genetic diversity within mucks decreases as the growing season progresses; if genetic diversity over all mucks remains stable over time; and the amount of genetic differentiation between onion thrips populations is related to the distance separating the populations. Finally, molecular genetic markers for mutations conferring resistance to pyrethroid insecticides will used to investigate the relationship between historic and present use of pyrethriod insecticides in each muck and the frequency of these mutations in the thrips population in those mucks. Findings will be used to inform development of improved systems for managing insecticide resistance and thrips-borne Iris Yellow Spot Virus in New York onion production systems so that they better reflect the levels of genetic isolation among onion thrips populations. Project results and their relevance to thrips management will be disseminated through extension presentations and web-based media. Findings will also be presented in papers or posters delivered at 2 scientific conferences each year. Satisfactory progress will be ensured through research updates at weekly lab meetings and presentation of results at annual professional meetings as well as the following annual benchmarks: 1. Collect and complete processing of early and late season samples (extract DNA, amplify DNA at all microsatellite and mtDNA COI loci, and sequence mtDNA COI loci)before the end of January in years 1 & 2 year, 2. By April of each year the sodium channel gene for each population will be amplified and sequenced and the data analyzed; 3. Complete a manuscript reporting results for objective 1 by July 1 of year 1. 4. In year two sample samples for the second year of Objectives 2 & 3 will be processed and manuscripts reporting the results will be completed. Research results will be presented at appropriate scientific meetings throughout the course of this fellowship.

Progress 08/01/12 to 07/31/14

Outputs
Target Audience: Progress and results of this project have been disseminated to both scientific and stakeholder audiences. Since the last reporting period I have given seminars discussing population genetic structuring of onion thrips in relation to economically important traits at UC Davis, Cornell, University of Hawaii, Auburn University, University of Thessaloniki, Greece, and Monsanto. I have also given a talk to NY onion growers at the NY Empire Expo and published an article in Onion World Magazine about the implications of this project on insecticide resistance management in NY muck onion agroecosystems. This Fall I will be presenting results at the National meeting of the Entomological Society of America, and have been invited to give a talk at the International Symposium of Thrips and Tospoviruses meeting next spring. Changes/Problems: No major changes were made to the project. The only challenge encountered was an unexpected result suggesting that ongoing gene flow occurs between two of the previously characterized lineages of onion thrips. To explain our results we needed a laboratory study to provide validation that this is possible. Luckily, a Masters student examining the potential for gene flow between these two groups generated data that corroborated with our results. Currently, we are awaiting publication of those results so that we can proceed with publishing our manuscript. What opportunities for training and professional development has the project provided? This project has allowed me to develop technical and analytical skills needed to use population genetics approaches to inform insect pest management decisions. During this project I have also had the opportunity to practice and refine oral and written communication skills, network, and develop two additional collaborations to further assess related questions in NY and Greek agroecosystems. How have the results been disseminated to communities of interest? The results and applications of these studies have also been disseminated outside of the scientific community. I have given a talk to NY onion growers at the NY Empire Expo and published an article in Onion World Magazine. I also plan to assist Brian Nault at Cornell with preparation of any additional educational materials that may include content from this study. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The genetic analyses needed to address these objectives were completed. Population genetic structuring of NY onion thrips were evaluated in relation to geographic distance, genetic distance, and reproductive mode. In 2011 and 2012 samples were collected early- and late-season to assess seasonal changes in population structuring. A manuscript is currently in preparation.

Publications

  • Type: Journal Articles Status: Other Year Published: 2015 Citation: Population genetic structure of arrhenotokous and thelytokous Thrips tabaci in New York onion cropping systems
  • Type: Journal Articles Status: Published Year Published: 2014 Citation: A.L. Jacobson, E.L. Vargo, G.G. Kennedy, and B.A. Nault. (2014) Onion thrips population genetics and implications for management. Onion World Magazine. February Issue.


Progress 08/01/12 to 07/31/13

Outputs
Target Audience: Updates on the results of these studies have been shared with Ed Vargo's, George Kennedy's, and Brian Nault's lab groups at North Carolina State University and Cornell University. Research seminars have also been given at the University of Georgia, the University of Thessaloniki, Greece, and to PIs of the Thrips-Tospovirus CAP Grant. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? This project has provided me the opportunity to work with new lab groups at North Carolina State University, and with researchers at Cornell University. It has also generated collaborations with researchers in Greece, where Thrips tabaci is an economically important pest, and primary vector of TSWV in tobacco production systems. Because of my experience working with thrips I was selected to participate in a mentoring program that is part of the Thrips-Tospovirus CAP grant. This grant will also be funding my attendance at the Annual Meeting of the Entomological Society of America this year, and will provide opportunities to attend more professional and grower meetings next year (see below). How have the results been disseminated to communities of interest? Updates on the results of these studies have been shared with Ed Vargo, George Kennedy, and Brian Nault lab groups at North Carolina State University and Cornell University. Currently the manuscript for objective 1 is being prepared for publication. What do you plan to do during the next reporting period to accomplish the goals? The microsatellite marker experiments, sequencing of mtCOI, and sequencing of sodium channel markers will be finished this fall. After the experiments have concluded the data will be analyzed and manuscripts prepared. After all of the analyses have been conducted I will also help to prepare extension materials with Brian Nault for NY onion producers. Next year I plan to give a talk at the NY Empire State EXPO, and if possible, a departmental seminar at Cornell. In addition, I am scheduled to give a departmental seminar at U.C. Davis, and plan to attend the International Thrips-Tospovirus Meeting to disseminate the results of my studies.

Impacts
What was accomplished under these goals? Since beginning my postdoctoral fellowship I have completed the research for objective 1 of my USDA fellowship. I am currently preparing a manuscript to present the results of objective 1. Progress has also been made on objective 2. The microsatellite marker component for first year samples (of the 2-year sampling plan) have been run, and analyzed. The last year of thrips collections is also almost completed: early season thrips collection trips took place in late May 2013, and the late season collection trip will take place at the end of September. The second year’s thrips samples are currently being processed.

Publications

  • Type: Journal Articles Status: Published Year Published: 2013 Citation: Manuscript from this project: Thrips tabaci population genetic structure in relation to geographic location and reproductive forms in New York onion cropping systems: In preparation. Target Journal, Molecular Ecology. Manuscript publication from Ph.D. (not funded by this grant): A.L. Jacobson and G.G. Kennedy. (2013) Effect of cyantraniliprole on feeding behavior and virus transmission of Frankliniella fusca and Frankliniella occidentalis (Thysanoptera: Thripidae) on Capsicum annuum. Crop Protection. In Press. A.L. Jacobson and G.G. Kennedy. (2013) Electrical penetration graph studies to investigate the effects of cyantraniliprole treatments on feeding behavior of Myzus persicae (Hemiptera: Aphididae) on Capsicum annuum. Pest Manag. Sci. In press A.L. Jacobson and G.G. Kennedy. (2013) Specific insect-virus interactions are responsible for the vector competence of different Thrips tabaci isolines to transmit different Tomato spotted wilt virus isolates. PLoS One. 8(1): doi:10.1371/journal.pone.0054567 A.L. Jacobson, W. Booth, E.L. Vargo, and G.G. Kennedy. (2013) Thrips tabaci population genetic structure and polyploidy in North Carolina in relation to competency as a vector of Tomato spotted wilt virus. PLoS One. 8(1): doi:10.1371/journal.pone.0054484 A.L. Jacobson, J.S. Johnston, D. Rotenberg, A.E. Whitfield, W. Booth, E.L. Vargo and G.G. Kennedy. (2013) Genome size and ploidy inference in four species of Thysanoptera, Thripidae and Aeolothripidae. Insect Molecular Biology. 22(1): 12-17. doi:10.1111/j.1365-2583.2012.01165.x