Source: NORTH CAROLINA STATE UNIV submitted to NRP
CHARACTERIZATION AND QUANTIFICATION OF NON-MANAGED HONEY BEE COLONIES FROM THE SOUTHERN U.S.
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0214925
Grant No.
2008-35302-04633
Cumulative Award Amt.
$125,000.00
Proposal No.
2008-02404
Multistate No.
(N/A)
Project Start Date
Sep 1, 2008
Project End Date
Aug 31, 2012
Grant Year
2008
Program Code
[51.2A]- Arthropod and Nematode Biology and Management (A): Organismal and Population Biology
Recipient Organization
NORTH CAROLINA STATE UNIV
(N/A)
RALEIGH,NC 27695
Performing Department
ENTOMOLOGY
Non Technical Summary
Adequate levels of genetic variation are paramount for the survival and adaptation of a species to new, adverse environmental conditions. Feral honey bee (Apis mellifera) populations once flourished in North America. Upon the arrival and establishment of a parasitic brood mite, Varroa destructor, feral honey bee populations were largely decimated. Studies have shown that the genetic composition of feral honey bee populations in North America were different than managed honey bee populations, containing genetic remnants from subspecies imported during the early colonization of North America. While it has been hypothesized that these once thriving feral populations served as a genetic reservoir of diversity for managed honey bee populations in the United States, no empirical evidence is available to support this claim, to date. In response to growing concerns about levels of genetic diversity in managed honey bee populations in the United States, plans to import additional honey bee germplasm are currently being addressed. This leads to the question of the status of feral populations. Research and anecdotal evidence suggest that the feral population may be recovering. This proposal will investigate the status of feral honey bee populations in the U.S. by re-sampling non-managed honey bee populations in the southern United States to determine its genetic composition and to finally address whether feral populations are truly recovering or whether natural nests and cavities are being repopulated by swarms from managed colonies, Africanized honey bees, or both. Mitochondrial and microsatellite DNA will be analyzed to evaluate the genetic structure and diversity of these populations. Results from this study will reveal the amount of genetic diversity available within U.S. honey bee populations and will allow us to determine the extent of genetic loss.
Animal Health Component
50%
Research Effort Categories
Basic
50%
Applied
50%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2123130108025%
2123130112025%
2123130104025%
2123130107025%
Goals / Objectives
The goal of this project is to map and genetically characterize unmanaged honey bee populations in the southeastern US. Due to the decreasing health of managed honey bee populations in the U.S., a census of feral populations in the U.S. is needed for scientific and economic reasons. The status of feral honey bee populations in the U.S. remains unknown after the 90 to 95% reduction of these populations by Varroa destructor. The collection and genetic analysis of feral honey bee populations is a crucial step towards determining the extent of genetic loss that these populations have experienced. Genetic characterization of unmanaged populations at these three levels: state, regional and population, will provide a more comprehensive picture of these populations in terms of genetic loss and structuring. Quantification of the amount of genetic diversity present in unmanaged populations is crucial for the development of sustainable management approaches whether they are plans for the importation of additional honey bee germplasm or the utilization of the genetic diversity found literally in our own backyard. Findings from this research will also help to end the scientific debate about whether feral populations are rebounding or if managed swarms are simply repopulating feral nest sites. By locating and collecting from unmanaged colonies along a transect from three distinct physiographic regions in North Carolina (Coastal Plains, Piedmont, and Mountains), the influence differing environments have on unmanaged honey bee populations can be explored. This could reveal new, more sustainable management regimes for beekeepers in similar climates. The identification of unmanaged nests throughout the state will also provide a way to monitor and develop baseline data and management strategies for the pending arrival and genetic introgression of Africanized honey bees. Examination of unmanaged colonies at the population level will provide important information on the natural history of feral nests that are subject to modern environmental stresses. Gene flow within and among populations can be analyzed and monitored over long periods of time, as well as correlated with both abiotic and biotic influences. Sampling discrete populations will provide information about effective breeding size, changes in allele frequencies over time correlated with temperature and other environmental variables, and allelic diversity at the population level. Data gathered from natural populations can then be compared to similar data gathered from other natural populations and managed populations. Within the natural population, the monitoring of a single nest over time will make available basic biological information: mating numbers of queens, swarming and dispersal behavior, nest architecture, queen longevity and health, brood rearing, sex ratio, and foraging behavior. In short, we now have the unique opportunity to glean from a largely unknown and woefully underutilized genetic resource to help learn about the basic biology of honey bees and improve their management.
Project Methods
The status of unmanaged honey bee populations in the U.S. will be analyzed at three different geographic levels to determine whether they are still genetically representative of historical feral populations or simply swarms from managed honey bee populations. Mitochondrial and nuclear DNA will be extracted, mitotyped, and genotyped to quantify the genetic diversity of wild honey bees. This research will reveal whether non-managed honey bee populations can still serve as a potential genetic reservoir for allelic diversity of managed populations. The population genetics software program ARLEQUIN 3.1 (Excoffier, L.G. Laval, and S. Schneider, 2005) will be used to calculate the frequencies of haplotypes present in the population based on maximum likelihood methods. This program will also identify shared halpotypes between populations and evaluate the amount of genetic structure in populations based on analyses of molecular variances (AMOVAs). Feral samples will be scored at 8 microsatellite loci, A24, A88, A113, B124 (Estoup et al. 1995), Ap43 (Garnery et al. 1998), Ap33, A76, and Ap81 (Solignac et al. 2003). The reactions will be analyzed using an ABI Biosystems 3730 automatic sequencer at the NC State University Genome Research Laboratory (GRL). The allele sizes at each microsatellite loci will be determined with the aid of GeneMapper software (Applied Biosystems). The population genetics software GENETIX will be used to calculate allele frequencies and to convert files into formats appropriate for other software programs. Hardy-Weinberg equilibrium, linkage disequilibrium, heterozygote deficiency, heterozygosity (observed and expected), genic and genotypic differentiation, and population pairwise Fst values will be estimated using the GENEPOP package (web version 3.4; Raymond and Rousset 1995) and ARLEQUIN 3.1. Using the software HP-RARE (Kalinowski, 2005) average number of alleles per locus (na), allelic richness (ag) and expected heterozygosity (He) will be calculated for each feral population. Rarefaction will take into account differences in sample sizes (Leberg 2002). The Bottleneck (Piry et al. 1999) program will also be used to detect reductions in effective sizes for populations by determining excesses in heterozygosity using three kinds of statistical tests: sign test, standardized differences test, and the Wilcoxons signed rank test. The programs STRUCTURE (Pritchard et al. 2000) and ARLEQUIN 3.1 will be used to evaluate genetic structure within feral populations. Sampling protocol: Form letters with stamped return envelopes will be sent to state parks, county parks, city parks, beekeeping clubs and associations, departments of public works, cemeteries, and golf courses in 8 states (Virginia, North Carolina, South Carolina, Georgia, Florida, Alabama, Mississippi, and Tennessee) asking for knowledge of locations and permission to collect unmanaged nests. Unmanaged nests will also be located and sampled via swarm trapping, beelining, and information gathered from the regional survey along three interstate highways.

Progress 09/01/08 to 08/31/12

Outputs
Target Audience: Beekeepers, Apiary inspectors, Commercial bee breeders and citizen scientists Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? We have provided educational material for hundreds of citizen scientists. We have provided training in the field and in the laboratory to 10 undergraduate researchers, 1 MS student, and 1 postdoctoral fellow. We have helped train students on molecular techniques, outreach development and given them academic opportunities and experience to advance their careers. How have the results been disseminated to communities of interest? This project has received tremendous support and enthusiasm from the beekeeping community throughout the United States. This is evidenced by the constant request for sample processing and also requests to present the project to various beekeeping associations. I have given over 40 presentations at local, regional and international beekeeping groups. This project has been featured in 6 media stories and in the British Bee Journal. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The goals of this project are to collect, analyze and determine the genetic identity of unmanaged honey bee hives in the southeastern United States. For centuries feral colonies have existed in the wild without human manipulation. This feral population was found to be genetically distinct from managed populations of honey bees collected during the early 1990’s. With the arrival an establishment of Varroa destructor, a parasitic brood mite, 90% to 95% of the feral population was thought to be eliminated. However, the whereabouts of unmanaged honey bee colonies have been reported for years by beekeepers and citizen scientists. During this project we have collected over 400 samples of unmanaged honey bees from various nesting sites covering over 15 states along the East Coast. Much of the hive location information was made possible due to the support and contributions of citizen scientists and the use of a website called savethehives.com (developed by Ronnie Bouchon). This site allowed the public to enter the coordinates of a honey bee nest site on a google map and also cataloged information for collection contacts. We have analyzed workers from each nest using various molecular markers, the COI-COII intergenic spacer region of the mitochondrial DNA and also ten polymorphic microsatellite markers. We also ran morphometric analyses on a subset of managed and unmanaged samples from North Carolina. The sequencing of COI-COII mitochondrial region revealed that most of the samples are representative of the subspecies Apis mellifera ligustica and Apis mellifera carnica. These two subspecies also represent the maternal lineages that make up the managed honey bee populations in the United States. However, we did locate isolated hives that have mitotypes representative of the subspecies Apis mellifera mellifera, the ‘dark’ German bee of Western Europe. This subspecies was imported over 3 centuries ago and has not actively been maintained in breeding programs. Analysis of the allele frequencies revealed that these unmanaged colonies do have a different genetic profile from feral and managed bees collected during the 1990’s and early 2000’s. This genetic differentiation is based on pairwise Fst analyses between unmanaged bees collected in 2008-2012, managed and unmanaged bees collected in 1990-1992, and managed bees collected from 1993-1995 and 2003-2005. However, when we compared the allele frequency data between managed and unmanaged bees collected in North Carolina in 2008-2009 there was so significant genetic differentiation between these two groups, suggesting that many of these unmanaged colonies were most likely swarms from managed colonies. The morphometric analyses were performed by Dr. De Jong in Brazil. He compared 30 true type specimens of each of the dominant subspecies: Apis mellifera mellifera, Apis mellifera Carninca, Apis mellifera ligustica and Apis mellifera caucasica to the managed and unmanaged bee samples from North Carolina using geometric wing analysis. He found that the unmanaged and managed bees collected from North Carolina grouped together supporting our microsatellite results, but interestingly they separated out from each of the true subspecies groups, creating their own unique cluster based on a suite of wing vein angle measurements. We also correlated mitochondrial sequence data with geographic location collection data and found that there was no observed local adaptation occurring, meaning that samples with more similar sequences did not occur in similar locations, but instead spread all over the state of North Carolina. This is probably due to the import of bees from other areas and movement of colonies within the state. Even though the funding has long since run its course we are still receiving samples of unmanaged bees from all over the country and storing them for a larger regional genetic analysis. This project highlights the importance of understanding the genetics of unmanaged honey bee populations in the United States, not only for the identification of survivor stock, but also the implications that colony and swarm movement has on U.S. breeding programs.

Publications

  • Type: Journal Articles Status: Published Year Published: 2010 Citation: Delaney, D.A., J.J. Keller, J.R. Caren, and D.R. Tarpy. (2010) Reproductive quality of honey bee queens. Apidologie, www.apidologie.org/10.1051/apido/2010027
  • Type: Journal Articles Status: Published Year Published: 2010 Citation: Tarpy, D.R., J.R. Caren, D.A. Delaney, D. Sammataro, J. Finley, G.M. Loper and G. DeGrandi-Hoffman. (2010). Mating frequencies of Africanized honey bees in the southwestern United States. Journal of Apicultural Research, 49(4): 302-310.
  • Type: Journal Articles Status: Published Year Published: 2011 Citation: Tarpy, D.R., J.J. Keller, J.R. Caren, and D.A. Delaney. (2011). Experimentally induced variation in the reproductive potential and mating success in honey bee queens. Insect Sociaux. DOI 10.1007/s00040-011-0180-z
  • Type: Conference Papers and Presentations Status: Published Year Published: 2011 Citation: Tarpy, D.R., J.R. Caren, and D.A. Delaney. (2011). Meta-analysis of the genetic relatedness among honey bee drones, queens, and their mates. American Beekeeping Federation Conference, January 4-8, 2011 Galvaston, Texas
  • Type: Journal Articles Status: Published Year Published: 2012 Citation: Tarpy, D.R., J. J. Keller, J. R. Caren and D. A. Delaney. (2012). Assessing the mating health of commercial honey bee queens. Journal of Economic Entomology 105 (1): 20-25.


Progress 09/01/10 to 08/31/11

Outputs
OUTPUTS: The goals of this project are to collect, analyze and determine the genetic identity of unmanaged honey bee hives in the southeastern United States. For centuries feral colonies have existed in the wild without human manipulation. This feral population was found to be genetically distinct from managed populations of honey bees collected during the early 1990's. With the arrival and establishment of Varroa destructor, a parasitic brood mite, 90% to 95% of the feral population was thought to be eliminated. However, the whereabouts of unmanaged honey bee colonies have been reported for years by beekeepers and citizen scientists. To date we have collected worker samples from over 400 nests spanning Connecticut, Delaware, Florida, Georgia, Maryland, North Carolina, Pennsylvania, South Carolina, Tennessee, Virginia and West Virginia. We also have started to collect bees from managed apiaries from each of these states for comparison. We have analyzed workers from each nest using mitochondrial and microsatellite markers. Currently we are using new nuclear markers to assess genetic differences. These markers are more sensitive and will better discriminate between managed and unmanaged populations.We have sequenced the COI-COII intergenic spacer region of the mitochondrial DNA of 1/4 of the samples and have performed preliminary phylogenetic analyses on these samples to ascertain the ancestral and biogeographic relationships. We also have baits traps hung within forest fragments of the Duke Forest in Durham and Chapel Hill, North Carolina. These traps have been baited with lure in the spring of 2009 and 2010 prior to swarming season and have been checked for establishment the following fall. We are continuing to collect samples along the east coast and incorporate the samples into our data set. The swarm traps are also being baited and lured for another season this spring. The savethehive.com website that has been used to track and collect many of the unmanaged samples continues to get use and provide great assistance with collection efforts. These samples will also form the basis of a study looking at the introgression of Africanized alleles into the unmanaged honey bee population along the east coast. Based on microsatellite analyses we have found that the unmanaged colonies have a unique genetic profile from the older managed collections and also the old feral collection sampled before the reduction in this population by Varroa. Preliminary sequence analyses have found that these unmanaged colonies are primarily representative of the subspecies Apis mellifera ligustica and Apis mellifera carnica. However, 7 of the 40 colonies are representative of the subspecies Apis mellifera mellifera which was imported into North America over 3 centuries ago. We also have found diversity within subspecies using mitochondrial sequence data. As we sequence more of the samples we should begin to have a clearer picture of the relationships between these unmanaged colonies and how or if biogeography has any bearings on these relationships. PARTICIPANTS: Deborah Delaney: Co-PI, University of Delaware David Tarpy: PI, North Carolina State University TARGET AUDIENCES: Beekeepers, Apiary Inspectors and the Commercial Honey Bee Industry PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

Impacts
The findings from this work to date show the need for increased sampling along the eastern coast of the United States to see if there are regional differences within this unmanaged population of honey bees. This project highlights the importance of the unmanaged honey bee population in the United States as a reservoir for genetic diversity and also as a potential source of survivor stock for U.S. breeding programs.

Publications

  • D.A. Delaney, J.J. Keller, J.R. Caren, D.R. Tarpy (2010). Reproductive quality of honey bee queens. Apidologie www.apidologie.org/10.1051/apido/2010027
  • David R. Tarpy, Joel R. Caren, Deborah A. Delaney, Diana Sammataro, Jennifer Finley, Gerald M. Loper, and Gloria DeGrandi-Hoffman (2010). Mating frequencies of Africanized honey bees in the southwestern United States. Journal of Apicultural Research 49(4): 302-310.
  • D. R. Tarpy, J. J. Keller, J. R. Caren and D. A. Delaney (2011) Experimentally induced variation in the reproductive potential and mating success in honey bee queens. Insect Sociaux DOI 10.1007/s00040-011-0180-z
  • Tarpy, D. R., J.R. Caren & D.A. Delaney (2011) Meta-analysis of the genetic relatedness among honey bee drones, queens, and their mates. American Beekeeping Federation Conference, January 4-8, 2011. Galveston, TX (Abstract).


Progress 09/01/09 to 08/31/10

Outputs
OUTPUTS: The goals of this project are to collect, analyze and determine the genetic identity of unmanaged honey bee hives in the southeastern United States. For centuries feral colonies have existed in the wild without human manipulation. This feral population was found to be genetically distinct from managed populations of honey bees collected during the early 1990's. With the arrival and establishment of Varroa destructor, a parasitic brood mite, 90% to 95% of the feral population was thought to be eliminated. However, the whereabouts of unmanaged honey bee colonies have been reported for years by beekeepers and citizen scientists. To date we have collected worker samples from over 200 nests spanning North Carolina, Tennessee, Virginia, Maryland, Delaware, Pennsylvania and Connecticut. We have analyzed workers from each nest using mitochondrial and microsatellite markers. We have sequenced the COI-COII intergenic spacer region of the mitochondrial DNA of 1/4 of the samples and have performed preliminary phylogenetic analyses on these samples to ascertain the ancestral and biogeographic relationships. We also have 90 baits traps hung within forest fragments of the Duke Forest in Durham and Chapel Hill, North Carolina. These traps have been baited with lure in the spring of 2009 and 2010 prior to swarming season and have been checked for establishment the following fall. The establishment of these traps with unmanaged honey bee colonies will allow us to follow their population dynamics and the dynamics of different pests and pathogens in the absence of human manipulation. We are continuing to collect samples along the east coast and incorporate the samples into our data set. The swarm traps are also being baited and lured for another season this spring. The savethehive.com website that has been used to track and collect many of the unmanaged samples continues to get use and provide great assistance with collection efforts. These samples will also form the basis of a study looking at the introgression of Africanized alleles into the unmanaged honey bee population along the east coast. Based on microsatellite analyses we have found that the unmanaged colonies have a unique genetic profile from the older managed collections and also the old feral collection sampled before the reduction in this population by Varroa. Preliminary sequence analyses have found that these unmanaged colonies are primarily representative of the subspecies Apis mellifera ligustica and Apis mellifera carnica. However, 7 of the 40 colonies are representative of the subspecies Apis mellifera mellifera which was imported into North America over 3 centuries ago. We also have found diversity within subspecies using mitochondrial sequence data. As we sequence more of the samples we should begin to have a clearer picture of the relationships between these unmanaged colonies and how or if biogeography has any bearings on these relationships. PARTICIPANTS: Deborah Delaney: Co-PI, University of Delaware David Tarpy: PI, North Carolina State University TARGET AUDIENCES: Beekeepers PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

Impacts
The findings from this work to date show the need for increased sampling along the eastern coast of the United States to see if there are regional differences within this unmanaged population of honey bees. This project highlights the importance of the unmanaged honey bee population in the United States as a reservoir for genetic diversity and also as a potential source of survivor stock for U.S. breeding programs.

Publications

  • D.A. Delaney, J.J. Keller, J.R. Caren, D.R. Tarpy (2010). Reproductive quality of honey bee queens. Apidologie www.apidologie.org/10.1051/apido/2010027
  • David R. Tarpy, Joel R. Caren, Deborah A. Delaney, Diana Sammataro, Jennifer Finley, Gerald M. Loper, and Gloria DeGrandi-Hoffman (2010). Mating frequencies of Africanized honey bees in the southwestern United States. Journal of Apicultural Research 49(4): 302-310.


Progress 09/01/08 to 08/31/09

Outputs
OUTPUTS: The collection and genetic analysis of feral honey bee populations is a crucial step towards determining the extent of genetic loss that these populations have experienced. The sampling approach for this project has three tiers (regional, state-wide, and individual population levels). Genetic characterization of non-managed populations at these three levels will provide a more comprehensive picture of these populations in terms of genetic loss and structuring. Quantification of the amount of genetic diversity present in non-managed populations is crucial for the development of sustainable management approaches whether they are plans for the importation of additional honey bee germplasm or the utilization of the genetic diversity found literally in "our own backyard". Findings from this research will also help to end the scientific debate about whether feral populations are rebounding or if managed swarms are simply repopulating feral nest sites. As mentioned earlier this study aims to re-sample non-managed honey bee nests from throughout the southeastern United States at three distinct levels. At the regional level we currently have samples from over 150 nests throughout North Carolina, South Carolina and Virginia. However, most of the samples are from within the state and are representative of the three different physiographic regions of North Carolina; Mountains, Piedmont, and the Coastal Plains. Analyses of these samples are being conducted in the laboratory at North Carolina State University. At the natural population level in conjunction with Duke Forest, we have 90 swarm traps placed within two forest plots near Durham, North Carolina. These traps are part of a longer term study. The goal is to establish a natural population in these forested areas that can be monitored over time to answer important biological and ecological questions. Two traps are currently occupied by non-managed honey bees and the traps are checked on a monthly basis for occupancy and damage. A three by three experimental design was used to ascertain whether pheromone lure , honey comb, a combination of the two or nothing has an affect on the nest establishment. The pheromone lure requires annual replacement. A blog has been developed tracing the collection's journey and has been used as a way to thank and keep the large number of citizen scientists and beekeepers who helped to locate these non-managed nests informed about the status of the project. North Carolina is made up of 100 counties and each county has a beekeeping organization. These organizations have been instrumental in launching this project. We have been able to speak at the different county meetings and inform people of our research ideas and goals. This project has been extremely well received by both beekeepers and concerned citizen scientists. The online site, savethehives.com developed by Ronnie Bouchon, has been instrumental in obtaining information on nest locations, as well, the media has played a large part in getting the word out about this research. PARTICIPANTS: Nothing significant to report during this reporting period. TARGET AUDIENCES: Nothing significant to report during this reporting period. PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

Impacts
The collection of the feral nests throughout the state of North Carolina is helping to educate beekeepers as well as citizen scientists about basic honey bee biology and history. The most prominent outcome to date is the dissemination of information to the public. I find that a crucial component to this project is meeting with people and educating them on the various molecular tools we have available to study this feral population. Citizens and beekeepers alike are fascinated by the scientific process and how molecular techniques can be utilized to answer different questions about honey bee population structure. The website savethehives.com not only has been instrumental in obtaining contact and nest site information but will be very useful in future analyses concerning population structure. The site allows people to map the nest onto google maps and a three mile radius circle is generated around the nest site. The locations and coordinates generated on the map are surprisingly accurate. The samples from the collection are currently being analyzed and variation in COI-COII intergenic spacer region of the mitochondrial DNA is present.

Publications

  • Delaney, D.A., Meixner, M.D., Schiff N.M., Sheppard, W.S. (2009) Genetic characterization of commercial honey bee (Hymenoptera: Apidae) populations in the United States by using mitochondrial and microsatellite markers. Ann. Entomol. Soc. Am. 102 (4): 666-673.