Source: UNIVERSITY OF ILLINOIS submitted to
PRRS VIRUS EPIDEMIOLOGICAL CONTROL THROUGH WHOLE GENOME VIRAL SEQUENCING OF ISOLATES PRRS-IL-006 - PRRS-IL-015
Sponsoring Institution
Cooperating Schools of Veterinary Medicine
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
0209203
Grant No.
(N/A)
Project No.
ILLV-44-6757
Proposal No.
(N/A)
Multistate No.
(N/A)
Program Code
(N/A)
Project Start Date
Jul 1, 2006
Project End Date
Jun 30, 2007
Grant Year
(N/A)
Project Director
Goldberg, T.
Recipient Organization
UNIVERSITY OF ILLINOIS
2001 S. Lincoln Ave.
URBANA,IL 61801
Performing Department
VETERINARY PATHOBIOLOGY
Non Technical Summary
PRRS virus is a serious economic problem for swine, but control strategies have been ineffective. Biological variation in the virus may account for this problem. This study will determine which viral genes are most strongly associated with immunity and clinical disease on Illinois farms; in so doing it will improve our ability to control this disease through strategies such as vaccination. Understanding the genetic basis of clinical disease and immunity is a critical step towards controlling pathogens such as PRRS virus. The potential benefits of this study include elucidating the genetic mechanisms by which PRRSV causes clinical disease on farms, helping to inform new vaccination strategies against PRRSV, and elucidation of general mechanisms by which highly variable RNA viruses like PRRSV evade host immunity. Improving disease control strategies for PRRS would lead to increased economic productivity for the swine production industry.
Animal Health Component
100%
Research Effort Categories
Basic
25%
Applied
75%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
31135101101100%
Knowledge Area
311 - Animal Diseases;

Subject Of Investigation
3510 - Swine, live animal;

Field Of Science
1101 - Virology;
Goals / Objectives
The overall objective of this research is to determine which genes in porcine reproductive and respiratory syndrome virus (PRRSV) are most closely associated with immune responsiveness and clinical disease development on Illinois farms. Full-length viral genomic sequences will be generated from 15 phylogenetically, clinically, immunologically, and geographically distinct viral isolates that have already been collected as part of a large database housed at the University of Illinois. The data generated would help determine why PRRS control strategies may be ineffective in the field (where multiple, genetically divergent viral variants often co-circulate), and how such strategies might be improved through the induction of immunity to specific viral genes or gene regions.
Project Methods
Ten viral isolates will be selected from a large database of viral isolates, immunological data, and clinical data that have been collected over the past three years as part of a larger study. These isolates are PRRSV-IL-006 through PRRSV-IL-015. These viral isolates will be sequenced in their entirety. Analysis of viral genetic data will determine with which viral genes are most closely associated with clinical disease and immunological responses in swine on Illinois farms. The predicted outcome is that genetic changes in certain viral genes will be more strongly associated with immunity and clinical disease than will be changes in other viral genes, and that control strategies (e.g. vaccines) directed against these gene regions would prove most effective in controlling clinical PRRS.

Progress 07/01/06 to 06/30/07

Outputs
OUTPUTS: Vaccines against PRRS virus are limited by the natural variation of the virus itself. This project used genomic sequencing and allied analyses to investigate why immunity to one strain of PRRS virus does not protect pigs against infection with other strain. This project disseminated information about the underlying genetic basis for this phenomenon. The study disseminated information to the scientific and stakeholder communities that will facilitate the development of PRRS vaccines with improved efficacy. The most significant output is a set of linear T-cell epitopes that is now available to the vaccine research community for further testing as vaccine candidates. PARTICIPANTS: Dr. Kapil Vashisht, PhD, undertook this project as part of his PhD training. The project provided a unique training opportunity for this graduate student involved to conduct research at the interface of PRRS molecular epidemiology and immunology. The project also provided a unique professional development opportunity for this student (who is a DVM) by enhancing his interactions with industry stakeholders. TARGET AUDIENCES: Results were recently targeted to the audience at the 2007 International PRRS Symposium in Chicago, IL in the form of a poster presentation. Scientists, pharmaceutical industry representatives, government representatives, and producer group representatives were in attendance.

Impacts
The project combined molecular epidemiological analysis of PRRSV field isolates PRRS-IL-006 - PRRS-IL-015 with existing data from controlled laboratory experiments to test the hypothesis that protective immunity to porcine reproductive and respiratory syndrome virus is strain specific, and to identify regions of the viral genome responsible for this strain specificity. Epidemiological analyses involved sequencing of PRRSV variants from persistently infected farms and correlating viral genomic changes with changes in host immunity and clinical disease. Existing, supplemental data involved exposing swine to attenuated virus and, subsequently, to unattenuated autogenous or heterogenous virus; indices of strain specific immunity and clinical disease were then be measured over 35 days in order to determine the relationship between immunity to a particular PRRSV variant and clinical protection against a genetically divergent variant. By combining data sources, this project has discovered that immunity to PRRS is only weakly cross-protective, and that certain epitopes in the viral gp5 envelope protein are likely determinants of the strength of cross protection. Specifically, work from this study identified three linear T-cell epitopes on gp5 that are conserved among divergent PRRSV variants. These epitopes are promising candidates for future vaccine research efforts.

Publications

  • Vashisht, K., Husman, R. J., Zuckermann, F. A. and Goldberg, T. L. (2008). Identification of peptides containing immunodominant glycoprotein 5 T cell epitopes of two porcine reproductive and respiratory syndrome virus strains. Vaccine, in review.
  • Vashisht, K., Lager, K. M., Zuckermann, F. A. and Goldberg, T. L. (2008). Variable immunogenicity among PRRS virus strains: implications for cross-protection following vaccination. Vaccine, in preparation.
  • Vashisht, K., Husmann, R., Zuckermann, F. A. and Goldberg, T. L. (2007). Identification of peptides containing immunodominant glycoprotein 5 T cell epitopes of two porcine reproductive and respiratory syndrome virus strains. International PRRS Symposium, Chicago, Illinois.