Source: IOWA STATE UNIVERSITY submitted to NRP
BIOTECHNOLOGY TEST PRODUCTION, IA: RECOVERY AND PURIFICATION OF RECOMBINANT PROTEINS FROM PLANTS FOR THERAPEUTICS AND INDUSTRIAL ENZYMES
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0204085
Grant No.
2005-34496-16003
Cumulative Award Amt.
(N/A)
Proposal No.
2005-06032
Multistate No.
(N/A)
Project Start Date
Sep 1, 2005
Project End Date
Aug 31, 2007
Grant Year
2005
Program Code
[VC]- (N/A)
Recipient Organization
IOWA STATE UNIVERSITY
2229 Lincoln Way
AMES,IA 50011
Performing Department
CENTER FOR CROPS UTILIZATION RESEARCH
Non Technical Summary
Processing steps often represent over one-half of the production costs for recombinant proteins expressed in plants. For using plants as hosts, it is important that these recovery and purification steps be developed to provide an optimal match of protein, host, and purification method. This project seeks to establish stratgies whereby targeted expression of recombinant proteins can best be used to simplify downstream processing by making proper matches of the extraction and separation methods to the characteristics of the contaminating host plant proteins and the characteristics of the recombinant protein.
Animal Health Component
50%
Research Effort Categories
Basic
(N/A)
Applied
50%
Developmental
50%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
5111510104030%
5111510200030%
5111510202040%
Goals / Objectives
Specific goals for Year 3 of this aggregated project are: 1. Develop maize varieties producing GFP using different promoters, targeting sequences and genetic backgrounds for determining the optimal expression strategy for a given method of milling, extraction and purification (Scott). 2. Conduct field trial with corn expressing one form of recombinant gelatin (rG) (50 kD) to produce sufficient grain for future processing trials (Wang). 3. Synthesize genes, transform, and select plants for rG suitable for capsule manufacturing based on evaluation studies conducted by capsule producers (Wang). 4. Continue to develop grain fractionation procedures to produce fractions enriched in target recombinant proteins by a) developing a small scale (10-25 g) procedure for dry milling corn to process limited quantities of grain, b) adapting, evaluating and comparing wet and dry fractionation procedures developed in previous years using corn expressing GFP in germ and corn expressing GFP in endosperm, and c) benchmarking wet and dry fractionation methods for rice, oats and barley (Johnson). 5. Expand the 2-D and 3-D database developed in the current year for protein separations via ion exchange of corn fractions to include: a) the non-corn plant host, rice; b) corn hosts of selected other genetic backgrounds (jointly with Objective 1), and c) additional separating agents, along with developing suitable resolution characterizations to rank the applicability of the separation method to the host (Glatz). 6. Demonstrate applications of the targeting, grain fractionation, and extraction and purification strategies developed to dog gastric lipase (a hydrophobic protein) in endosperm), GFP in both germ and endosperm fractions for controlled direct comparison separation challenges of recombinants in different fractions, and 50 kD gelatin in germ (Glatz, Johnson, Scott, Wang).
Project Methods
The primary long-term goal of this proposed program is to establish strategies whereby targeted expression of recombinant proteins can best be used to simplify downstream processing by making proper matches of the native protein matrix, the extraction method, the separation method, and the characteristics of the recombinant protein. A secondary long-term goal is to use this information to produce technologies and systems for specific proteins of interest to industry. To do so we will 1.Develop appropriate methods of plant fractionation such that most matrix contaminants (especially oil and non-target proteins) will be removed before the subsequent extraction steps are attempted. 2. Determine the feasibility of conducting initial grinding and partial fractionation on-farm so that viable seed do not leave the farm nor can enter normal grain marketing channels. 3. Determine necessary storage conditions for both original plant material and separated fractions to maintain stable product and matrix components. 4. Develop extraction processes that match mechanical disruption to necessary changes in plant microstructure for efficient extraction of the recombinant protein relative to native matrix contaminants. 5. Identify optimum extract:plant ratios and other extraction parameters, and extract/residue separation processes that result in high product recovery while minimizing the volume of extract that must continue through the process. 6. Develop rules of thumb for selecting purification steps by establishing libraries of native matrix protein behaviors in various common separation methods. 7. Evaluate the effectiveness of the above steps by processing a currently available selection of transgenic crops with a range of targeted expression locales. This would be needed to establish that the strategies developed above could be effective in practical applications. 8. Test our integrated processing systems using model recombinant proteins in partnership with ProdiGene of College Station, TX, and/or FibroGen of South San Francisco, CA.

Progress 09/01/05 to 08/31/07

Outputs
Accomplishments: Objective 1. Develop maize varieties producing GFP for the optimal expression strategy for recovery. We developed a promoter with transcriptional activity in the endosperm and embryo of maize kernels by combining domains of a promoter with endosperm activity with domains of a promoter with embryo activity and testing the resulting constructs using GFP as a reporter gene. We expect that this promoter will have a high level of tissue specificity. Objective 2 (modified). Biochemical characterization of corn seed-derived rGelatin. 50kD gelatin (rG) was purified from transgenic grain and compared to the same product produced in Pichia. With combinations of mass spectrophotometric identification via tryptic digest, MS-MS characterization of the intact protein, N-terminal sequencing, amino acid analysis, and denaturation temperature we have shown it to be equivalent with some small variation in the degree of proline hydroxylation. Objective 3. Synthesize genes and transform plants for rG. Two rG gene constructs have been introduced into two different types of maize genotypes, male fertile and male sterile. Molecular analysis (RT-PCR) results indicated that these genes were expressing in maize callus culture. Objective 4. Develop grain fractionation procedures to produce enriched fractions. We used a grain pearler to break corn for degerming using 10-g of corn that enables testing small samples for dry degerming potential. Other devices proved ineffective at this scale. When employing our laboratory 100-g wet milling protocol with rLTB-containing corn, 46-72% of the rLTB protein could be recovered in the fiber fractions when steeping without the normal sulfur dioxide and lactic acid, which will enable easy isolation and little loss in valuable starch and protein fractions. The presence of the acids significantly reduced yields. We identified past approaches to produce fractions from rice, oats, and barley. Objective 5. Couple protein properties to separation behavior. 3-D (size, isoelectric point, hydrophobicity) characterization of corn extracts and the fractions eluting from ion exchange columns have been obtained. Model building to relate the properties to separation behavior has begun using Principal Component Analysis. Objective 6. Demonstrate applications of the targeting, grain fractionation, and extraction and purification strategies. A process and assay for lipase extraction and purification from transgenic corn endosperm was developed and the results published; likewise results for purification of aprotinin from corn germ were submitted and published. Work is just beginning with the first harvest of transgenic corn expressing GFP in endosperm or germ and a next generation planting to obtain higher expression levels has been made. For development of contained field planting protocols, we followed existing APHIS requirements and added additional measures such as bagging tassels and hand pollination.

Impacts
Our methods are providing for high levels of production of valuable proteins in corn with targeted expression to particular portions of the grain. This targeting is combined with milling procedures we have developed to enrich the protein-containing fractions. Such procedures can be done on-farm to add value and eliminate the need to ship viable genetically modified seed. The fractionation also provides for easier purification by early elimination of the fractions not containing product; those fractions can be used to obtain co-products such as fuel ethanol and biodiesel. Our characterization approach for host proteins will enable design of those purification processes for producing such proteins in alternative hosts. Safe production of the source plant is being enhanced by avoiding accumulation in tissues that will not be harvested and by field procedures that prevent gene migration.

Publications

  • Gu, Z. and C. E. Glatz. J. Chromatogr. B, 845: 38-50, 2007. Aqueous two-phase extraction for protein recovery from corn extracts.
  • Gu, Z. and C. E. Glatz. Sep. Sci. Technol., 42: 1-19, 2007. Recovery of recombinant dog gastric lipase from corn endosperm extract
  • Gu, Z. and C. E. Glatz. Biotechnol. Bioengr., 97, 1159-1169, 2007. A method for three dimensional protein characterization and its application to a complex plant (corn) extract.
  • Q. Zhong, L. Xu, C. Zhang, and C. E. Glatz, Appl Microbiol Biotechnol 76:607-613, 2007. Purification of recombinant aprotinin from transgenic corn germ fraction using ion exchange and hydrophobic interaction chromatography.
  • Shepherd, C; Scott, PM. 2005. Maize Genetics Conference Abstracts. 47:P80 A Maize Chimeric Promoter Drives High Level GFP Expression in Endosperm and Embryo.


Progress 09/01/05 to 09/01/06

Outputs
Objective 1. Develop maize varieties producing rGFP using different promoters, targeting sequences and genetic backgrounds for process optimization. rGFP expressing grain has been produced in kg quantities for use in processing studies. rGFP lines were advanced and characterized as to transgene copy number, and level and tissue specificity of expression. The highest levels of GFP were 1% in embryo and 6% in endosperm. A novel promoter was designed to function in both germ and endosperm and used to produce rGFP. Objective 2. Characterization of corn-derived rGelatin. 50kD gelatin was purified from transgenic grain and compared to the same product produced in Pichia. Data from N-terminal sequencing, tryptic peptide sequence analysis, and immuno-recognition established the match of the two products. The measured mass (44088 Da) was within 0.2% of the calculated mass and measurable peptide sequences provide a 64% sequence coverage supporting fidelity of expression. Gel staining revealed no glycosylation. Objective 3. Synthesize genes, transform, and select plants for rGelatin suitable for capsule manufacturing. The industrial collaborator is to provide the preferred gene. Objective 4. Develop grain fractionation procedures to produce enriched fractions. With a laboratory pearler we achieved degerming giving 77% of the oil in 28% of the mass on a 10-g scale. With this procedure we found that 72% of the rLTB protein could be recovered in the fiber fractions. This was surprising because rLTB was thought to be located within starch granules. We surveyed the literature about methods to use in recovering recombinant proteins from rice, oats, and barley and identified approaches to produce fractions enriched recombinant proteins. We established the feasibility of using tissue-specific rGFP containing grain to monitor fractionation procedures (rather than estimating on the basis of oil content) allowing development of new procedures with improved recovery of specific tissues for higher yield and purity. Objective 5. Expand the 2-D and 3-D database for protein separations via ion exchange. Based on 2-D profiles collected from native corn extracts, three pH values have been selected to investigate 2-D data for protein separations via ion exchange. Both gradient and step elution have been evaluated, but step elution has been selected to develop the database because it is more suitable for database access. A third (hydrophobic) dimension will enhance the model correlation. Objective 6. Demonstrate applications of the targeting, grain fractionation, and extraction and purification strategies. We carried out hand dissection and mechanical fractionation of grain containing rGFP expressed in germ or endosperm; extraction and purification is planned for the current year. The rGelatin was purified for characterization and that work provides us with data for pursuing a lower-cost purification strategy for production.

Impacts
This work is establishing approaches for the safe and economical production of proteins in corn. On farm aspects are aimed at providing elimination of contamination risk and realization of on-farm value addition. Coupling of proteomics to design of purification processes will benefit a variety of production systems.

Publications

  • Vignaux, N., Fox, S.R. and Johnson, L.A. 2006. A 10-g laboratory wet-milling procedure for maize and comparison with larger scale laboratory procedures. J. Cereal Sci. 83(5):482-490.
  • Vignaux, N., Octavani, D. and Johnson, L.A. 2004. Efficiencies of different types of dry mills in recovering a fraction rich in recombinant protein expressed in endosperm. Annual Meeting of American Association of Cereal Chemists and the Tortilla Industry Association, San Diego, CA. Sept. 19-22. AACC/TIA Annual Meeting Program Book, Abstract 305, pp 141.
  • Vignaux, N. and Johnson, L.A. 2006. Wet milling: An efficient process to recover a recombinant LTB-rich fraction from corn. Annual Meeting of American Association of Cereal Chemists, San Francisco, CA. Sept. 17-20. Program Book, World Grains Summit: Foods and Beverages, Abstract P322, pp 173.