Source: CORNELL UNIVERSITY submitted to NRP
POLYGENE MAPPING OF HORMONES THAT CONTROL POTATO TUBER SPROUTING
Sponsoring Institution
State Agricultural Experiment Station
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0194837
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Sep 1, 2002
Project End Date
Aug 31, 2006
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
CORNELL UNIVERSITY
(N/A)
ITHACA,NY 14853
Performing Department
PLANT BIOLOGY
Non Technical Summary
Following harvest potato tubers enter a period during which sprouting does not occur. This is a problem when such dormancy has not ended by the next planting time. The objective is to determine the chromosomal location of genes for some of the internal compounds that regulate tuber dormancy. This will assist in the genetic manipulation of hormone levels that in turn regulate potato tuber dormancy and sprouting.
Animal Health Component
25%
Research Effort Categories
Basic
75%
Applied
25%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
20113101020100%
Knowledge Area
201 - Plant Genome, Genetics, and Genetic Mechanisms;

Subject Of Investigation
1310 - Potato;

Field Of Science
1020 - Physiology;
Goals / Objectives
The potato is an important crop. Following harvest potato tubers enter a period of dormancy, during which sprouting does not occur. This is a problem when dormancy has not ended by the next planting time. Through DNA marker genes we have detected five quantitative trait loci (QTLs) that are associated with tuber dormancy. A QTL denotes a region of a chromosome, linked to a marker gene, that has a significant effect on the quantitative trait. Polygene mapping is a powerful tool for dissecting the hormonal regulation of plant development. A comparison of the QTL maps for hormone content and tuber dormancy helps determine which hormones are involved in controlling dormancy. It could also provide key information for the eventual cloning of dormancy genes. Potato tuber dormancy and sprouting are probably regulated by the balance of several growth inhibitors and promoters within the tuber. The objectives of this work are to use a segregating potato population that has already been polygene-mapped to determine the location of genes for some of these compounds through the analysis of tuber samples, and to compare the locations of such genes with gene locations previously determined for potato tuber dormancy.
Project Methods
Potato tubers of 130 genotypes will be analyzed for their content of several gibberellins (GAs), auxin, tuberonic acid and tuberonic acid glycoside by gas-chromatography-mass spectrometry, with heavy isotope internal standards, and ABA by immunoassay. The location of QTLs for hormone content will be determined using computerized qGene analysis, which will enable a comparison between the location of QTLs regulating the hormone level and tuber dormancy to be made. Determinations of the genes encoding for factors regulating tuber dormancy and sprouting, and their chromosomal locations, will enable the future breeding or molecular manipulation of potatoes to optimize the time of dormancy for the specific location where the potato variety in question will be grown, and also to find more reliable methods of inhibiting or breaking dormancy of seed potatoes.

Progress 09/01/02 to 08/31/06

Outputs
We prepared the samples and extracted tubers of 123 genotypes in USA and Egypt, and made an initial purification through solid phase extraction columns specific for basic molecules enabling cytokinins to be separated from the non-basic plant hormones. Every sample was run through HPLC, collecting fractions for IAA, JA, tuberonic acid and tuberonic acid glucoside. The IAA samples were run on GCMS, but the data was yet been analyzed. The other samples have yet to be run. All samples were analyzed for the cytokinins zeatin, zeatin riboside, isopentenyl adenine and isopentenyl adenosine. Unfortunately, despite repeated attempts, the variability was too great to permit any definitive conclusions. No conclusive data was available at the official termination of the project. It is hoped to continue working on the samples.

Impacts
A determination of the hormonal content of potato tubers in relation to dormancy and sprouting will assist in the hormonal regulation of dormancy and sprouting

Publications

  • No publications reported this period


Progress 01/01/05 to 12/31/05

Outputs
One hundred and twenty potato tuber samples were purified by HPLC into fractions for jasmonic acid, indoleacetic acid, tuberonic acid and tuberonic acid glycoside. The jasmonic acid samples were derivatized and analyzed by GC-MS. The analysis of other samples is still to be done. Calculations of levels of jasmonic acid are ongoing. Zeatin, zeatin riboside, isopentenyl adenine and isopentenyl adenosine were analyzed in these samples by immunoassay. Analysis of the data is ongoing.

Impacts
A determination of the hormonal content of potato tubers in relation to dormancy and sprouting will assist in the hormonal regulation of dormancy and sprouting.

Publications

  • Ewing, E. E., Simko, I., Omer, E. A. and Davies P. J. 2004. Polygene mapping as a tool to study the physiology of potato tuberization and dormancy. Am. J. Potato Research 81: 33-41.


Progress 01/01/04 to 12/31/04

Outputs
The objective of this project is to identify quantitative trait loci (QTL) for plant hormones associated with potato dormancy or dormancy breaking in an RFLP-mapped potato population. 123 clones were previously mapped for the depth of tuber dormancy. Tuber samples of all 123 clones were extracted in methanol, the methanol evaporated, and the extract run through solid phase extraction (SPE) cartridges with consecutive elution solvents designed to separate acidic and basic plant hormones. The basic fraction was used to quantitate the level of zeatin/zeatin riboside and isopentenyl adenine/adenosine using enzyme linked immunosorbent assay (ELISA). The assay was performed 5 times for replication and consistency. The data are currently being computed.

Impacts
A determination of the hormonal content of potato tubers in relation to dormancy and sprouting will assist in the hormonal regulation of dormancy and sprouting.

Publications

  • No publications reported this period


Progress 01/01/03 to 12/31/03

Outputs
123 clones of RFLP mapped potato were grown harvested and the tubers placed in cold storage until the earliest started to sprout. About 10-15g of tubers was freeze dried and stored at -80C with desiccant. 63 samples were extracted and the extract partially purified. 60 samples were transported to Egypt for extraction and purification there as per the terms of the research agreement.

Impacts
A determination of the hormonal content of potato tubers in relation to dormancy and sprouting will assist in the hormonal regulation of dormancy and sprouting.

Publications

  • No publications reported this period