Source: TENNESSEE STATE UNIVERSITY submitted to
IDENTIFICATION OF THE ANTIFREEZE MECHANISM AND GENES IN PLANTS WITH TOLERANCE TO FREEZING TEMPERATURES DURING THE GROWING SEASON
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0193277
Grant No.
2002-38814-12598
Cumulative Award Amt.
(N/A)
Proposal No.
2002-02973
Multistate No.
(N/A)
Project Start Date
Sep 15, 2002
Project End Date
Sep 14, 2006
Grant Year
2002
Program Code
[EQ.P1]- (N/A)
Project Director
Zhou, S.
Recipient Organization
TENNESSEE STATE UNIVERSITY
3500 JOHN A. MERRITT BLVD
NASHVILLE,TN 37209
Performing Department
AGRI SCIENCES
Non Technical Summary
Low and freezing temperatures during the growing season cause annual yield losses and crop failures in the US and limit where crops can be grown worldwide. The understanding of the antifreeze mechanism in plant species that tolerates sporadic freezing temperatures is necessary for the development of strategies to minimize losses due to low temperatures. The purpose of this project is to discover of antifreeze mechanisms in cold tolerant plants, identify and isolate genes with high antifreeze activity that could be introduced in crops. This project has the potential to discover and isolate genes that could be used for the development of cold tolerant crops through genetic transformation and increase the world's food supply by lengthening the growing seasons for these crops.
Animal Health Component
(N/A)
Research Effort Categories
Basic
100%
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
20324991040100%
Goals / Objectives
The primary goals of this project are to study the cellular and molecular changes during freezing and defreezing and to identify genes that are related to cold tolerance. To obtain these goals, our efforts will be directed toward the following objectives: 1)Identification of induced gene expression using cDNA diffential display and cloning these genes from the cDNA libraries; 2)Identification of apoplastic proteins that accumulate under low temperature treatments and identification of these proteins by MS generated peptide mass profile analysis; 3)Functional studies of the putative cold related proteins produced in a yeast system for antifreeze activity.4)Identification of induced gene expressions using cDNA diffential display and cloning these genes from the cDNA libraries; 5)Identification of apoplast proteins that accumulate under low temperature treatments and identification of these proteins by MS generated peptide mass profile analysis; and 6)Functional studies of putative cold related proteins produced in a yeast system for antifreeze activity.
Project Methods
Tissue viability after cold treatments will be determined by TTC. Apoplastic protein will be isolated and analyzed for protein contents. Soluble carbohydrates, urea, amino acid and polyols will be quantified. Proline contents will be extracted and quantified spetrophotometerically. Neutral lipid will be isolated from oven-dried tissues and separated using C18-reversed phase thin-layer chromatography and quantified as well as fatty and unsaturated fatty acids. Those quantitatively and/or qualitatively changed after the freezing treatments will be considered cold related proteins and will be purified using chromatography according to its mt and PI and separated using a 2-D PAGE. Spots will be in-gel digested with trypsin and separated on reverse phase HPLC. Fragment molecular weight will be determined using the matrix assisted laser desorption/ionization-time of flight. MS generated peptide mass profiles will be used to identify protein in database. RNA fingerprinting technique will be used to determine the effect of low temperatures on gene transcription. mRNA will be reverse-translated into cDNA and amplified using arbitrary primers. PCR products will be separated on denaturing polyacrymide/urea gel and dried and exposed to X-ray film. After comparison of signals, fragments specific to cold treatments will be identified and isolated from the original polyacrylmide gel and re-amplified with the original primer combinations. PCR products will be cloned on T/A cloning vectors. Samples from plants grown at 0C and the lowest surviving temp will be used to isolate mRNA for cDNA libraries preparation on a Lambda ZAP II vector. Plasmids from PCR clones will be amplified and isolated. Inserted fragments will be isolated and used as templates to synthesize probes. cDNA library manipulation and hybridization will be carried out. Positive clones will be sequenced and DNA sequence will be blasted to identify cDNA clones. Genes encoding for cold related proteins will be selected out for further studies. Previously obtained Type III AFP homologous PCR clones will also be used to screen the cDNA library for the isolation of complete sequence of antifreeze genes. Apoplastic proteins with identity to antifreeze proteins will be selected out for microsequencing. Amino acid sequences will be used to design primers for cloning. Clones will be used to synthesis probes to screen for the low temp genes in the cDNA library. cDNA clones with prospecting antifreeze or stress related function will be cloned onto secreted expressing vector pPICza. Linear vectors will be used to transform Pichia pastoris strain GS111 through electroporation. Transformants will be plated on YPDS plus 100ug/ml Zeocin. Colonies will be selected and patched onto YPM plates. Positive clones will be scaled up and the secreted recombinant proteins will be purified from the medium by a single-step reverse-phase HPLC. Isolated proteins from yeast will be assayed for antifreeze activity. A series dilution of proteins will be tested individually and in different combinations. Ice crystal growth will be controlled and examined under phase-contrast photomicroscopy.

Progress 09/15/02 to 09/14/06

Outputs
The funding period for this project was from 10/01/2002 to 09/14/2006. The overall objective of the project is to identify genes and their regulatory mechanisms in cold stress. To accomplish the goal, we have selected two nursery crop species with very high cold tolerance. Antioxidant enzyme system and antioxidant status was found to be affected by exposure to chilling temperature in a cold tolerant cultivar of Leucanthemum maximum. Japanese spurge (Pachysandra terminalis) is an evergreen plant, it can survive below 0oC temperature, esp freeze and thaw cycles in natural growth habitat without apparent leaf damage. Molecular study on this species has identified a cysteine proteinase gene, Genbank accession DQ403257; Lhcb2, accession DQ436475 ); Lhcb1, accession DQ392956; gycolate oxidase, accession DQ442286; NADPH-dependent hydroxypyruvate reductase accession DQ442287; Photosystem II PsbR, accession DQ781306; plastidal beta-carbonic anhydrase, accession DQ781308, and Rubisco activase, DQ486905. Quantitative PCR analysis indicates that the protease, PsbR and bromo-domain-containing protein genes can be induced by both heat and chilling temperatures while the plastidal beta-carbonic anhydrase gene is suppressed by the stresses. The photorespiration genes are all stable to chilling stress, but the glycolate oxidase gene transcripts showed obvious decline at heat stress. The conclusive result from this research is that the chilling related stability or increase in the transcript accumulation for the genes associated with protein degradation, photorespiration, photosynthetic apparatus is an characteristic trait of the tolerant species. In addition, we have determined the survival temperature for the seedlings of Japanese spurge and commuted the information with the producer. This project has contributed greatly to the development in the field of stress molecular biology at The Institute of Agricultural and Environmental Research of Tennessee State University. Funding from this project has helped us to purchase the equipments for cDNA differential display, real-time PCR assay, and several computers. The faculty and students at TSU have been trained in DNA and protein techniques through collaborations with Vanderbilt University and the Genhunter Company at Nashville, TN. Five papers have been published on referred journals. The research results have been presented as posters and oral presentations in the American Society of Plant Biology 2003, 2004,2005, 2006; Southern Nursery Association 2003, 2004,2005,2006; University-Wide Conference at Tennessee State University, 2003, 2004,2005,2006; as well as in-house seminar presentations at IAGER, TSU.

Impacts
Freezing and chilling temperature stresses cause tremendous damage to agriculture and green industry. This research was to identify molecular mechanism for tolerance to low temperature from tolerant plant species. The Japanese spurge was selected as the test plant because it can tolerant as low as -20oC, esp. the leaves can survive the freeze and thaw cycle in its natural growth habitat. Through the current research, several cold regulated genes have been isolated from this species. These genes can be incorporated into other sensitive species and may have the potential to improve their cold tolerance. During the progress of the project, we have identified the temperature extremes for the Japanese Surge seedlings and have commuted this information with the producer (Yoder Brothers, Inc.). The final outcome in the long run will benefit the nursery industry as well as other sectors of agriculture. The regulatory pattern for the cloned genes by both heat and cold stresses can serve as a guide to further dissect the control element for temperature stresses in different plants species. This research has also enriched the body of knowledge on temperature stresses, esp. in nursery crops.

Publications

  • Zhou, S., Chen, F. and Sauve, R. 2006. Structure and temperature regulated expression of a Cysteine Protease Gene in Pachysdandra terminalis Sieb. & Zucc. Journal of American Society of Hortscience. Accepted.
  • Zhou, S., Chen, F, Nahashon, S. and Chen, T. 2006. Cloning and characterization of glycolate peroxidase and NADH-dependent hydropyruvate reductase genes in Pachysandra terminalis Hortscience.41:1-5.
  • Zhou, S., Sauve, R. and Abudullah, A. 2005. Identification of genes regulated by low temperature in Pachysandra terminalis Sieb.et Zucc using cDNA differential display. HortScience 40(7):1995-1997.
  • Zhou, S., Sauve, R. and Mmbaga, M.T. 2005. Adaptation of Pachysandra terminalis Sieb.and Zucc. to freezing temperatures by the Accumulation of mRNA and Antifreeze Proteins. HortScience. 40(2):346-347.
  • Zhou, S., Sauve, R. and Frenkel, C. 2005. Cold- induced antioxidant enzyme changes in Leucanthemum maximum cv. Silver Princess. HortScience. 40(3):546-548.
  • Zhou, S. and Sauve, R. et al. 2005.Changes in Gene Expression are regulated by temperature stress in Pachysandra terminalis. HortSciences, 40(4).
  • Zhou, S. 2006. Cloning cold-regulated genes from Pachysandra terminalis. Proceedings of Plant Biologist.
  • Zhou, S. 2006. Molecular mechanism for cold tolerance of ornamental nursery plants. Proceedings of the 27th Annual University-Wide Research Symposium, Tennessee State University.
  • Zhou, S. 2006. Cloning genes from Japanese Spurge that encode for LHC Proteins (Chlorophyll a/b Binding Proteins). Proceedings of the 14th Biennial ARD Research Symposium.
  • Zhou, S., Sauve, R. 2005. Effects of cold stress on the activity of catalase in Leucanthemum maximum cv. Silver Princes. Proceedings of the 26th Annual University-Wide Research Symposium, Tennessee State University.
  • Sauve, R. and Zhou, S. 2005.Temperature regulation of gene transcription in Pachysandra terminalis, a cold hardy shade perennial. Proceedings of Southern Nursery Association.


Progress 01/01/05 to 12/31/05

Outputs
Seven full-length genes related to cold tolerance have been isolated. Two genes encoding chlorophyll a/b binding proteins has been deposited in the GenBank. In addition, real-time quantitative PCR analysis has shown that these genes are cold stable. Three other LHC genes has been isolated, but need more work to confirm their DNA sequences. One proteinase gene has been cloned to its full-length sequence. We are making vectors for genetic transformation to test its possible function in resistance to environmental stresses.

Impacts
The project has cloned several cold tolerance related genes and deposited their sequences in the NCBI Genebank. Results from this project have enriched the knowledge in molecular mechanism of cold tolerance in cold hardy plant species. The cloned genes will be incorporated into cold sensitive crops to test their potential in improving cold tolerance of sensitive crops such as tomatoes.

Publications

  • Zhou, S., Sauve, R. and Abudullah, A. 2005. Identification of genes from Pachysandra terminals using cDNA differential display. HortScience.40(7):1995-1997.
  • Zhou, S., Sauve, R. 2005. Changes in Gene Expression are regulated by temperature stress in Pachysandra terminalis. HortSciences, 40(4).


Progress 01/01/04 to 12/31/04

Outputs
In this period, we have completed cDNA differential display, cDNA library construction, screening for the cold tolerance genes. Over 100 genes have been identified to be regualted by temeperature stress. These genes are being cloned into yeast for protein functional studies.

Impacts
The finding that catalase and protein kinase are involved in reponse mechanism to cold stress in Leucanthemum maximum will help to design strategies for improving cold tolerance of sensetive plant species.

Publications

  • Zhou, S., Sauve, R. and Mmbaga, M. 2005. Cold tolerance in Pachysandra terminalis is regulated by changes in protein and mRNA. Hortscience, In print.
  • Zhou, S., Sauve, R. and Frenkel, C. 2005. Cold-Induced Antioxidant Enzymes Changes in Leucanthemum maximum Silver Princess. Hortscience, accepted.
  • Zhou, S. and Sauve, R. 2004. Identification of cold regulated genes from Pachysandra terminalis. Conference presentation at Plant Biologist 2004.Florida


Progress 01/01/03 to 12/31/03

Outputs
In 2003, we have finished the following three parts of the project: 1. Analysis of antioxidant system. It was found that among all the antiodixant enzymes, catalse was the most sensetive and stable enzyme in Leucanthemum maximum under cold stress; 2. Proteomics analysis identified that cold treatment induced accumulation of kinase proteins in the leaves of Leucanthemum maximum; 3. Several genes were identified to be cold inducible in leaf tissues of Japanese Spurge using cDNA differential display and reverse northern dot blot analysis.

Impacts
The finding that catalase and protein kinase are involved in reponse mechanism to cold stress in Leucanthemum maximum will help to design strategies for improving cold tolerance of sensetive plant species.

Publications

  • Zhou, S. and Sauve, R.J. 2003. Antioxidant enzyme changes in Leucanthemum maximum during progressive cold stress. Presented at the Annual Conference of Southern Nursery Association. Atlanta, July, 2003.
  • Zhou, S. and Sauve, R.J. 2004. Identification of cold-induced proteins in Leucanthemum maximum, a plant tolerant to sub-freezing temperatures. Abstract submitted to the StoneSymposium, Plant Response to Abiotic Stress. Santa Fe, New Mexico, February, 2004.


Progress 01/01/02 to 12/31/02

Outputs
During the last 3 months, we have formed an external review committee and initiated work toward the analyses of cold induced proteins from Japanese spurge and in 3 cultivars of shasta daisies. With Japanese spurge, the protocol for protein isolation and 2-D analyses is completed and 12 cold-iducible peptides have been identified. In addition, peptide mapping from some proteins has been completed. A paper has been submitted to the Journal of Environmental Horticulture and the PI has been invited to attend the Gordon Research Conference on Temperature Stress in Plants to be held in Ventura, CA on January 26-31, 2003.

Impacts
The development of crops resistant to early and late frosts.

Publications

  • No publications reported this period