Source: NORTH CAROLINA STATE UNIV submitted to NRP
DNA-BASED TYPING OF STAPHYLOCOCCUS AUREUS ASSOCIATED WITH HUMAN AND ANIMAL DISEASES
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0186764
Grant No.
(N/A)
Cumulative Award Amt.
(N/A)
Proposal No.
(N/A)
Multistate No.
(N/A)
Project Start Date
Oct 1, 2000
Project End Date
Sep 30, 2004
Grant Year
(N/A)
Program Code
[(N/A)]- (N/A)
Recipient Organization
NORTH CAROLINA STATE UNIV
(N/A)
RALEIGH,NC 27695
Performing Department
GENETICS
Non Technical Summary
Staphylococcus aureus is an opportunistic pathogen that causes a variety of infections, many of which are serious or life threatening to humans and animals. This project attempts to identify specific strains of Staphylococcus aureus that preferentially colonize certain organs and tissues in humans leading to disease and cause mastitis in dairy animals.
Animal Health Component
80%
Research Effort Categories
Basic
20%
Applied
80%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
3113410110010%
3113450110010%
3113820110010%
3114010110020%
7224010110050%
Goals / Objectives
The main objective of the project is to identify strains of Staphylococcus aureus which produce specific types of infections in humans and animals, especially those that demonstrate a propensity to colonize certain organs and tissues. The specific objectives are 1) determine the pulsed-field gel electrophoresis (PFGE) and ribotype chromosome fragment patterns of S. aureus isolates taken from patients with septicemia and a specified type and primary site of infection, 2) determine the PFGE and ribotype chromosome fragment patterns of S. aureus isolates taken from dairy cows and goats with mastitis, 3) identify S. aureus ecovar-specific chromosome fragments for the purpose of distinguishing human, bovine, and goat strains from each other, and use this information to assess transfer between host species, and 4)determine the persistence of S. aureus strains causing mastitis within infected dairy herds and their movement between herds.
Project Methods
The basic approach to this project involves the isolation of Staphylococcus aureus from patients with septicemia and a known focus of infection (under the direction of Dr. V. G. Fowler and the Duke University Clinical Microbiology Laboratory) and from dairy cows and goats with mastitis (under the direction of Dr. K. L. Anderson and the NCSU CVM Mastitis Laboratory) followed by definitive species and ecovar identification and molecular typing by macrorestriction analysis using PFGE (under the direction of the leader, Dr. W. E. Kloos)and ribotyping (under the direction of a reference laboratory). Restriction fragment patterns of chromosomal DNA will be analyzed by visual and computer-assisted documentation and image analysis systems and software. Isolates will be considered to be members of the same strain if they have identical fragment patterns or differ by the position of only one or two fragments as a consequence of a single genetic event. Conserved S. aureus ecovar chromosome fragments will be identified by making comparisons of the above human and animal PFGE and ribotyping patterns to find those which are present in all or nearly all members of a particular ecovar , but not present in other ecovars.

Progress 10/01/00 to 09/30/04

Outputs
Macrorestriction (RFLP) analysis, using the restriction enzyme SmaI and pulsed-field gel electrophoresis (PFGE), of the chromosomes of 322 Staphylococcus aureus isolates taken from as many cases of human septicemia have identified 32 lineages and approximately 70 sublineages of this species. We are still waiting for the case report data from Dr. Vance G. Fowler (Duke University Medical Center, Durham, NC) to correlate RFLP patterns with the primary foci of infections. Likewise, RFLP analysis using PFGE was performed on the chromosomes of 90 and 590 S. aureus isolates taken from cases of bovine mastitis in Costa Rica and North Carolina, respectively. Twenty lineages and 81 sublineages of S. aureus were identified between 1988 and 2003 in three North Carolina State University dairy herds. Of these, 3 lineages (7 sublineages) persisted for a long term (10 to 15 years). One of these was common to all three herds. Two represented major strains isolated in relatively large cell numbers. The persistent lineages were susceptible to a wide range of antibiotics. The herds were related by management and movement of cows. The North Carolina lineages were distinctly different from those of Costa Rica, though some regions of the S. aureus chromosome were conserved. The RFLP analysis proved to be a very useful tool in identifying specific lineages and following their movement between hosts.

Impacts
Macrorestiction analysis (RFLP) of the Staphylococcus aureus chromosome has successfully identified a variety of different lineages and sublineages of this opportunistic pathogen such that it can determine their persistence on and movement between hosts. S. aureus producing mastitis in dairy cattle are very difficult to eliminate, even with the use of recommended antibiotic treatment of infected cows. Although some strains of this species appear to be transient in infected herds, others can persist for many years. This investigation has identified, with the aid of DNA-based (genotypic) typing, several persistent strains in a group of three related North Carolina State University dairy herds. It is expected that future inquiries will attempt to determine the mechanisms whereby persistent strains evade host immune systems and antibiotic treatment.

Publications

  • No publications reported this period


Progress 10/01/02 to 09/30/03

Outputs
Collaborative studies on the long-term persistence of Staphylococcus aureus strains associated with mastitis in three related dairy herds have shown that two major strains and one minor strain have persisted in the herds for at least 10 years. These herds were related by management and movement of cows. Staphylococcal strains or lineages were identified by macrorestriction analysis of chromosomal DNA using pulsed-field gel electrophoresis. The persistent strains were susceptible to all 14 different antibiotics tested using National Committee for Clinical Laboratory Standards MIC procedures. The number of new isolates examined this year was approximately equal to that examined the previous year. The long-term study has demonstrated the tenacity of certain S. aureus strain populations, even in the presence of antibiotic treatment.

Impacts
Staphylococcus aureus producing mastitis in dairy cattle are very difficult to eliminate, even with the use of recommended antibiotic treatment of infected cows. Although some strains of this species appear to be transient in infected herds, others can persist for many years. This investigation has identified, with the aid of DNA-based (genotypic) typing, several persistent strains in a group of three related dairy herds. Future inquiries will attempt to determine the mechanisms whereby persistent strains evade host immune systems and antibiotic treatment.

Publications

  • Lyman, R., C. George, W. Kloos, C. Spooner, and K. Anderson. 2003. Long-term persistence of genetic types of mastitis-causing Staphylococcus aureus on three dairy herds. The American Association of Bovine Practitioners Proc. 36:168-169.


Progress 01/01/02 to 12/31/02

Outputs
Macrorestriction analyses of the chromosome of Staphylococcus aureus using pulsed-field gel electrophoresis have continued to identify specific lineages and sublineages responsible for human septicemia and bovine mastitis. Sublineages were distinguished by differences in the position, addition, or deletion of one or two restriction sites. In general, as the number of isolates examined increased, the amount of clonal variation observed increased. Most of the mastitis isolates could be grouped into two major lineages, and these demonstrated some clonal variation due to one or two genetic events affecting restriction-fragment size. The number of new isolates examined this year was approximately equal to that examined in the previous year.

Impacts
Staphylococci are one of the most prevalent bacteria causing infections in humans and animals resulting in morbidity and mortality. Their infections can result in high economic losses to agriculture. Once strains or lineages causing the most damage to health can be identified, it should be possible to monitor them using molecular fingerprinting methods to identify their sources and limit their proliferation. Several years of typing such lineages have supported the hypothesis that relatively few lineages are responsible for most infections.

Publications

  • Smith, P., C. Spooner, R. Lyman, C. George, W. Kloos, and K. Anderson. 2002. Distribution of strains of Staphylococcus aureus isolated from milk of cows in North Carolina. Proc. 41st Annu. Meet. National Mastitis Council, p. 233-234.
  • Liebl, W., W. E. Kloos, and W. Ludwig. 2002. Plasmid-borne macrolide resistance in Micrococcus luteus. Microbiol. 148: 2479-2487.


Progress 01/01/01 to 12/31/01

Outputs
The continuation of macrorestriction analyses of the chromosome of Staphylococcus aureus using pulsed field gel electrophoresis has identified specific lineages and strains responsible for human septicemia and bovine mastitis. Two lineages accounted for most of the S. aureus isolates taken from North Carolina institutional herds suffering from mastitis. These and numerous others were detected among private herds of this state. Major lineages could be subdivided into strains or clones differing from one another on the basis one or two genetic events affecting restriction fragment size (e.g., by small deletions, insertions and/or the addition or subtraction of restriction sites).

Impacts
Staphylococci are one of the most prevalent bacteria causing infections in humans and animals resulting in morbidity and mortality. Their infections can result in high economic losses to agriculture. Once strains causing the most damage to health can be identified, it should be possible to monitor them using molecular fingerprinting methods to identify their sources and limit their proliferation.

Publications

  • Kloos, W. E., and J. M. Hardie. 2001. International committee on systematic bacteriology subcommittee on the taxonomy of staphylococci and streptococci. Minutes of the meeting, 4 July 1994, Prague, Czech Republic. Int. J. Syst. Evol. Microbiol. 51:715-716.
  • Kloos, W. E., J. M. Hardie, and R. A. Whiley. 2001. International committee on systematic bacteriology subcommittee on the taxonomy of staphylococci and streptococci. Minutes of the meeting, 17 September 1996, Institut Pasteur, Paris, France. Int. J. Syst. Evol. Microbiol. 51:717-718.


Progress 10/01/99 to 09/30/00

Outputs
n/a

Impacts
(N/A)

Publications

  • No publications reported this period