Source: KANSAS STATE UNIV submitted to
ISOLATION OF MAIZE GENES CONTROLLING DEFENSE REACTIONS TO PATHOGENS OF OTHER CEREALS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
0186723
Grant No.
2001-35319-10014
Project No.
KS9665
Proposal No.
2002-02670
Multistate No.
(N/A)
Program Code
51.8
Project Start Date
Dec 1, 2000
Project End Date
Nov 30, 2005
Grant Year
2003
Project Director
Hulbert, S. H.
Recipient Organization
KANSAS STATE UNIV
(N/A)
MANHATTAN,KS 66506
Performing Department
PLANT PATHOLOGY
Non Technical Summary
Transfer of disease resistance genes to crop species from close relatives is a common breeding tool.
Animal Health Component
(N/A)
Research Effort Categories
Basic
50%
Applied
50%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2011530108050%
2011510108050%
Knowledge Area
201 - Plant Genome, Genetics, and Genetic Mechanisms;

Subject Of Investigation
1510 - Corn; 1530 - Rice;

Field Of Science
1080 - Genetics;
Goals / Objectives
1) We will characterize the genomic area around the maize Rxo and Rpa genes. This will be done by completing a BAC (bacterial artificial chromosome) contig through the region. The BACs will then be scanned for other genes by partial sequencing. These sequences will then be analyzed by searching for significant open reading frames and by searching for sequence homology in databases. 2) The PIC19 gene family is a family or resistance gene-like sequences that maps to the Rxo and Rpa loci, and are therefore candidates for these genes. We will characterize the PIC19 family members by sequence analysis. This will allow us to determine how many family members are clearly nonfunctional. We will also sequence partial cDNA clones to determine how many of the genes are transcribed. The combined sequence and transcriptional analysis will provide favorite candidates for the Rxo and Rpa genes. 3) We will create transgenic maize lines with our favorite candidate genes from the PIC19 gene family by transforming them into rxo/rxo, rpa/rpa maize genotypes. Transgenic plants will be challenged with the X. oryzae pv. oryzicola and P. andropogonis pathogens to determine if the transgenes confer a hypersensitive reaction. This will indicate which of the PIC19 family members correspond to the Rxo and Rpa genes.
Project Methods
Transfer of disease resistance genes to crop species from close relatives is a common breeding tool. It is limited, however, by the lack of donor species that can be hybridized with any given crop species, and by the extent of genetic variation in these species that has not already been utilized. A future trend will be to transfer genes from much more distantly related species by recombinant DNA techniques. Recent strategic and technical advances in resistance gene isolation will make this aspect of the work much less limiting. Tests of heterologous resistance gene transfer in dicots have shown promise, as long as the donor and recipient have been closely related. We propose to develop a model system for testing R gene transfer between different grass species, using two genes from maize. The Rxo gene confers a hypersensitive defense reaction to the rice bacterial streak pathogen, Xanthomonas oryzae pv. oryzicola. The Rpa gene confers a hypersensitive reaction to the sorghum bacterial stripe pathogen, Pseudomonas andropogonis. These two genes probably belong to the same family of resistance genes. We will characterize this gene family and identify the Rxo and Rpa genes by transformation of rxo/rxo, rpa/rpa maize genotypes with cloned genomic fragments carrying these genes. Ultimately, we will transfer these genes to rice and sorghum to determine if they confer resistance to their respective pathogens.

Progress 12/01/00 to 11/30/05

Outputs
We isolated the Rxo1 gene of maize, which controls a resistance reaction to the bacterial streak pathogen of rice, Xanthomonas oryzae pv. oryzicola. We also isolated the corresponding avirulence gene from the bacterial pathogen. When both are delivered into maize or rice cells together, defense responses are initiated. We also determined that the Rxo1 gene confers resistance to some strains of Burkholdaria andropogonis, the bacterial stripe pathogen of maize and sorghum. We made transgenic maize plants with the Rxo1 gene to demonstrate that the Rxo1 gene controls resistance reactions to both bacterial pathogens.

Impacts
The Rxo1 transgene was demonstrated to control resistance to X. oryzae pv. oryzicola, a pathogen which does not yet occur in US rice growing regions but is on the Select Agent List. This is the first demonstration that a resistance gene can function after transfer between distantly related cereals like maize and rice. This is also the first demonstration that some cereal resistance genes can confer resistance to multiple bacterial genera.

Publications

  • Zhao, B., Ardales, E.Y., Brasset, E., Claflin, L.E., Leach, J.E., Hulbert, S.H. (2004) The Rxo1/Rba1 locus of maize controls resistance reactions to pathogenic and nonhost bacteria. Theor. Appl. Genet. 109:71-79
  • Monosi, B., Wisser R. J., Pennill, L. and S.H. Hulbert (2004) Full-Genome analysis of resistance gene homologs in rice. Theor Appl Genet. 109(7):1434-47.


Progress 01/01/04 to 12/31/04

Outputs
We isolated the Rxo1 gene of maize, which controls a resistance reaction to the bacterial streak pathogen of rice, Xanthomonas oryzae pv. oryicola. We also isolated the corresponding avirulence gene from the bacterial pathogen. When both are delivered into maize or rice cells together, defense responses are initiated. We also determined the Rxo1 gene confers resistance to some strain of Burkholdaria andropogonis, the bacterial stripe pathogen of maize and osrghum. We made transgenic maize plants with the Rxo1 gene to demonstrate the Rxo1 gene controls resistance reactions to both bacterial pathogens. We transferred the Rxo1 gene into transgenic rice and demonstrated that it functions to control resistance to bacterial streak in this pathogen.

Impacts
The Rxo1 transfene was demonstrated to control resistance to X.oryae pv oryzicola, a pathogen which does not yet occur in US rice growing regions but is on the Select Agent List. This is the first demonstration a resistance gene can function after transfer between distantly related cereals like maize and rice. This is also the first demonostration some cereal resistance genes can confer resistance to multiple bacterial genera.

Publications

  • Zhao, B., Ardales, E. Y., Raymundo, A. Trick, H.,Leach, J.E., and Hulbert, S.H. (2004) The avrRxo1 gene from the rice pathogen Xanthomonas oryzae pv. oryzicola confers a nonhost defense reaction on maize with resistance gene Rxo1. Mol. Plant Microbe Interact 17:771-779.
  • Smith, S., and Hulbert, S.H. (2003). Evolution of disease resistance genes. In Genomic and Genetic Analysis of Plant Parasitism and Defense. J.E. Leach, T. Wolpert and S. Tsuyumu, eds. APS Press, St. Paul, MN.
  • Zhao, B., Ardales, E.Y., Brasset, E., Claflin, L.E., Leach, J.E., Hulbert, S.H. (2004) The Rxo1/Rha1 locus of maize controls resistance reactions to pathogenic and nonhost bactera. Theor. Appl. Genet. 109:71-79.


Progress 01/01/03 to 12/31/03

Outputs
Several cereal disease resistance genes are being tested for functionality after transfer to distantly-related cereal crops. One resistance gene we are testing in heterologous cereals is the Rxo1 gene of maize. The Rxo1 gene controls a hypersensitive resistance reaction to the rice bacterial leaf streak disease, caused by Xanthomonas oryzae pv. oryzicola (Xoo) and also controls a resistance reaction to the sorghum bacterial stripe pathogen Burkholderia andropogonis. We isolated an NBS-LRR gene that controls the resistance phenotype when transferred into maize lines that do not carry the Rxo1 gene. We also isolated the Avr gene that interacts with Rxo1 (avrRxo1) to facilitate the molecular characterization of the interaction. When the avrRxo1 gene was placed under control of a plant promoter and bombarded into B73 (Rxo1) maize cells, it induced the HR as indicated by a lack of reporter gene expression. Transient assays indicate the maize Rxo1 gene can detect the presence of avrRxo1 in rice and initiate defense responses. This was determined by delivering both the Rxo1 and avrRxo1 into leaf cells simultaneously by delivery on micro-projectiles. The results indicate the gene should function to control resistance in rice. We are now transferring the Rxo1 gene to rice to verify that it will confer resistance to the bacterial leaf streak disease. We also transferred maize Rp1 genes to wheat to determine if they can be used to confer leaf rust resistance. Two different Rp1 genes, Rp1-D and Rp1-D21, were transferred to wheat by biolistic transformation techniques. None of the wheat lines showed any noticeable rust resistance. Analysis of the transcripts in the transgenic plants indicated the genes were not being transcribed properly and premature truncation of the transcripts was probably responsible for the lack of expression.

Impacts
Testing the utility of resistance gene transfer between cereals will have a big impact on designing strategies to develop disease resistant cultivars. The Rxo1 gene appears to be working in the heterologous cereal species, rice. If it controls the rice disease this will indicate isolation of pathogen resistance genes from nonhost cereal species is a viable strategy for engineering resistance.

Publications

  • Zhao, B., Ardales, E.Y., Brasset, E., Claflin, L.E., Leach, J.E., Hulbert, S.H. 2003. The Rxo1/Rba1 locus of maize controls resistance reactions to pathogenic and nonhost bacteria. Theor. Appl. Genet. In Press
  • Zhao, B., Ardales, E. Y., Raymundo, A., Trick, H., and Leach,J. E., Hulbert, S.H. 2003.The avrRxo1 gene from the rice pathogen Xanthomonas oryzae pv. oryzicola confers a nonhost defense reaction on maize with resistance gene Rxo1. Submitted
  • Steinau, M., Ayliffe,M.A., Park, R. F., Rooke, L., Pacheco, M. G., Hulbert S. H., Trick H.N., and Pryor,A.J. (2003) Aberrant mRNA processing prevents functional transfer of the maize Rp1-D rust resistance gene to wheat and barley. Submitted.
  • Zhao, B., Lin, X. Ardales, E., Trick, H., Leach, J., Hulbert, S.H. (2003) Maize Rxo1 and avrRxo1 from a rice bacterial pathogen interact to elicit a nonhost resistance reaction. Phytopathology Abstract.
  • Bai, J., Pennill, L.A., Ning, J., Lee, S.W., Ramalingam, J., Webb C.A., Zhao, B., Sun, Q., Nelson, J.C., Leach J.E. and Hulbert S.H. (2002) Diversity in Nucleotide Binding Site-Leucine-Rich Repeat Genes in Cereals. Genome Research, 12:1871-1884


Progress 12/01/00 to 11/30/02

Outputs
Major gene resistance to the bacterial leaf streak, caused by Xanthomonas oryzae pv. oryzicola (Xoo) has not been identified in rice. We identified a maize gene (Rxo1) that controls a hypersensitive resistance reaction to this pathogen in maize. We also identified a resistance gene-like (NBS-LRR) gene family that maps to the locus. We isolated the Avr gene that interacts with Rxo1 (avrRxo1) to facilitate cloning of the Rxo1 gene and enable the molecular characterization of the interaction. To accomplish this, an isolate of Xanthomonas oryzae pv. oryzae (the rice bacterial blight pathogen), which does not cause HR when infiltrated into maize, was used as a recipient for transformation of an Xoo cosmid library. A cosmid was identified which conferred the ability to cause the HR when infiltrated into the maize line B73 (Rxo1) but not Mo17 (rxo1). A gene with a 1.2 Kb coding region that conferred the ability to cause the HR was subcloned from the cosmid. When this gene was placed under control of a plant promoter and bombarded into B73 (Rxo1) maize cells, it induced the HR as indicated by a lack of reporter gene expression. To determine if any of the linked NBS-LRR family members was the Rxo1 gene, the family members were characterized and used in transient assays to determine if they interact with the avrRxo1 gene. Three of five family members in the maize B73 line were predicted to code for potentially functional NBS-LRR proteins. One of these three appeared to account for most of the transcript from this gene family. This gene was also found to affect cell viability when co-bombarded into rxo1/rxo1 maize lines with the avrRxo1 gene, indicating the NBS-LRR gene is the Rxo1 gene. Similar transient assays indicated the Rxo1 gene also interacts with avrRxo1 and induces defense responses in rice cells. We are now transferring the putative Rxo1 gene to rice to determine if it will confer resistance to the bacterial leaf streak disease.

Impacts
Testing the utility of resistance gene transfer between cereals will have a big impact on designing strategies to develop disease resistant cultivars. The Rxo1 gene appears to be working in the heterologous cereal species, rice. If it controls the rice disease this will indicate isolation of pathogen resistance genes from nonhost cereal species is a viable strategy for engineering resistance.

Publications

  • Zhao, B., Lin, X., Ardales, E.Y., Leach, J.E., Hulbert, S.H. (2002) A maize gene controlling a resistant reaction to rice bacterial streak. Proceedings of the International Rice Congress.


Progress 01/01/01 to 12/31/01

Outputs
We have identified an NBS-LRR gene family with five members that map to the Rxo and Rpa genes. These are maize genes that control resistance reactions to bacterial pathogens of rice (Rxo) and sorghum (Rpa). We have cloned the avirulence gene from the rice pathogen (Xanthomonas oryzae pv. oryzicola) that the Rxo gene interacts with. We have used this gene to develop transient maize transformation assays to examine the NBS-LRR genes to determine which one controls the resistance reaction. We are now constructing maize transgenics that stably express this gene to verify it is the resistance gene. We are also transferring it to rice to determine if it can be used to control the rice bacterial streak disease.

Impacts
The transient assay system we developed will allow us to determine whether R genes will be expressed in heterologous cereals. We expect this to be an important tool in breeding cereals using recombinant DNA techniques.

Publications

  • Zhao, B., Ardales, E.,Y., Leach, J., E., Hulbert, S.H. (2001) Non-host Avirulence gene avrRxo1 from Xanthomonal oryzae pv oryzicola confers the hypersensitive reaction on maize with Rxo1. Abstract. 10th International Congress on Molecular Plant-Microbe Interactions.
  • Zhao, B., Lin X., Leach, J., Hulbert, S.H. (2001) Molecular analysis of maize genes conferring a non-host hypersensitive reaction to rice bacterial streak. Abstract. Proceedings Internat. Conf. Plant Genome, Plant Genome San Diego