Source: MISSISSIPPI STATE UNIV submitted to NRP
POTENTIALS (ADVANCING SPECTROSCOPIC TECHNIQUES FOR IN SITU SOIL HEALTH ASSESSMENTS)
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1032216
Grant No.
2024-67019-42338
Cumulative Award Amt.
$750,000.00
Proposal No.
2023-10252
Multistate No.
(N/A)
Project Start Date
Jul 1, 2024
Project End Date
Jun 30, 2028
Grant Year
2024
Program Code
[A1401]- Foundational Program: Soil Health
Recipient Organization
MISSISSIPPI STATE UNIV
(N/A)
MISSISSIPPI STATE,MS 39762
Performing Department
(N/A)
Non Technical Summary
The preeminent challenge to reduce soil degradation is the lack of accurate and widespread data for robust health assessment. Conventional soil sample collection and laboratory analysis are labor-intensive, costly, and slow to yield results. Conversely, spectroscopy which is based on the interaction of electromagnetic spectrum (or light) with matter, is a rapid, non-destructive, and low-cost method with the potential for in situ soil health estimations. Current literature lacks a complete technical analysis on soil moisture and intactness effects on all spectral regions and techniques which has created a barrier for field implementation. The goal of this project is to enable the practical application of spectroscopy for in situ soil health assessment. To this end, three objectives are devised: (i) investigate different spectroscopic techniques for soil health assessment, (ii) study the effects of sample condition on soil spectra and mitigation strategies, and (iii) design, develop, and test an integrated spectroscopic soil sensing system (iS4) for in situ 3D mapping of soil health parameters. This sensor platform will be capable of high-throughput, low-cost, rapid, and accurate 3D soil health measurements to support decision making on climate-smart management practices and to support research to understand management of physical and biogeochemical processes.
Animal Health Component
45%
Research Effort Categories
Basic
5%
Applied
45%
Developmental
50%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
40401102020100%
Knowledge Area
404 - Instrumentation and Control Systems;

Subject Of Investigation
0110 - Soil;

Field Of Science
2020 - Engineering;
Goals / Objectives
The goal of this proposal is to enable the practical application of spectroscopy for in situ soil health assessment. The specific objectives are:Investigate and evaluate different spectroscopic techniques for soil health assessmentStudy the effects of sample conditions on soil spectra and mitigation strategiesDesign, develop, and test an integrated spectroscopic soil sensing system (iS4) to enable accurate, rapid, and efficient 3-D mapping of soil health parameters
Project Methods
The goal of this proposal is to enable the practical application of spectroscopy for in situ soil health assessment. This aims to conduct fundamental research to find the best spectroscopic technique to be used for field soil health sensing and develop a sensing system to deploy the technology in the field. To this end, three objectives will be executed.Objective 1: Investigate and evaluate different spectroscopic techniques for soil health assessment.The working hypothesis for objective 1 is that the mid infrared (MIR) attenuated total reflectance (ATR) technique will show superior accuracy compared to other techniques. To test this, we will obtain soil samples from Mississippi state and scan them using different spectroscopic techniques (i.e., diffuse reflectance and ATR) in different spectral regions (UV, visible and near-infrared, and MIR). The samples will be scanned under field intact and dry ground conditions. The data analysis will provide directives on what technique and spectral region will yield the highest accuracy for soil health properties.Objective 2: Study the effects of sample conditions on soil spectra and mitigation strategies.The working hypothesis for this objective is that sample intactness and moisture will have different effects on different spectroscopic techniques which can be mitigated to improve accuracy. To test this hypothesis, the most accurate spectral regions and spectroscopic techniques selected from objective 1 will be further investigated for moisture and intactness effects. Samples obtained under objective 1 will be subjected to a rewetting study to scan the samples at different moisture levels. The data analysis will provide directives on what mitigation techniques should be used to remove the moisture and intactness effects from spectra to ensure accurate soil health measurements under field conditions.Objective 3: Design, develop, and test an integrated spectroscopic soil sensing system (iS4) to enable accurate, rapid, and efficient 3-D mapping of soil health parameters.Using the selected spectroscopic technique per the outcomes of objective 2, the iS4 consisting of a surface scanner to obtain spectra from surface soils, a penetrometer to scan soil profile up to 50 cm and get penetration force, spectrometers to acquire spectra, tablet to collect, process, and estimate soil health parameters, and an unmanned ground vehicle as the mobile platform to carry all the sensors across a field will be developed and tested. The system will have the capability to autonomously drive to predefined sampling points and obtain spectra.

Progress 07/01/24 to 06/30/25

Outputs
Target Audience:Two graduate students were hired starting spring 2025 to work on the project. One graduate student (GRA 1) who was hired to conduct soil sensor development, gained skills in soil sampling techniques, including operating Giddings machine for core extraction, in identifying soil depths, and handling soil samples throughout processing. In addition, she increased her proficiency in SolidWorks for designing soil sensing components, supporting future sensor integration, gained hands on experience with different types of spectrometers, learning calibration and scanning techniques, and data analysis. She improved her skills in machine learning techniques such as PLSR, SVR, Random Forest, and Neural Networks for soil property prediction modeling and advanced my data analysis and spectral preprocessing abilities using Python. The second student (GRA 2) was hired to work on the Uncrewed Ground Vehicle (UGV) setup and integration. It was based on Robot Operating System (ROS) 2, and expertise in ROS2 was enhanced as a result. In addition, UGV navigation is a combination of different algorithms such as sensor calibration, Simultaneous Localization and Mapping (SLAM), path planning, simulation testing, hardware testing, and User Interface (UI) prompts. Experience in these individual sections was greatly improved and debugging and frequent testing of different setups helped to enhance overall understanding. All these sections were followed by a comprehensive literature review and productive discussions, which also contributed to personal growth during the project. Changes/Problems:The major challenge was that the project start was delayed by few months since the GRAs were hired in Spring 2025. So, soil sampling was prioritized during the summer of 2025 to collect the samples needed. Still, obtaining permission for sampling sites in private lands is still challenging. For that, assistance from local NRCS officials is requested. Since the delivery of the UGV was delayed, the system has been tested only in simulation so far. Typically, UGV simulation files are released by the manufacturer, but files for the Husky A300 were unavailable until May 2025. To address this, custom configuration files replicating the Husky A300's functionality were developed from scratch. These had some limitations due to the simulation environment, but efforts were made to match real-world specifications as closely as possible. What opportunities for training and professional development has the project provided?This project has provided GRA 1 with multiple training opportunities, including hands-on experience operating the Giddings machine, performing spectrometer calibration and scanning, and developing designs in SolidWorks, including 3D printing and mechanical component assembly. She also attended weekly and monthly research meetings with the PIs, where she presented her progress to the team, and participated in AI in Agriculture and Natural Resources conference (March 31 - April 2, 2025, Mississippi State University) and modeling technique webinars, which have strengthened my technical expertise and research communication skills. GRA 2 also attended the weekly and monthly research meetings with the PIs to present his work to the team and get feedback. In addition, he participated in the 2025 SPIE Defense + Security, held in Orlando, FL, offered exposure to industry innovations and peer discussions, especially around SLAM and autonomous navigation. Participating in technical sessions, post-session discussions and Q&A sessions, further enhanced the GRA's knowledge in this field. Furthermore, the GRA visited the exhibition stalls from various major companies and understood the importance of appropriate hardware and software implementation strategies. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals?Soil sample collection will continue to collect additional samples adding up to ~300 processed samples. Models will be developed to estimate soil health properties from spectral data of the collected samples. Preliminary designs for soil sensors will also be developed. When the Husky A300 is delivered, systems currently tested in the simulation will be physically tested. This will help identify differences between simulation and real-world performance, allowing updates to the code and offering insights into simulation limitations and overlooked differences. The current navigation maps the terrain before moving to waypoints, but the goal is to navigate unknown terrain while collecting soil samples. This requires an exploratory approach using visual, LiDAR, and high-accuracy GPS data. Related work is expected to begin. The current path planning algorithm will be further tested and refined based on alternative strategies from the literature. Improvements to autonomous navigation, including using GPS (currently limited in simulation) as the main positioning method, are also planned.

Impacts
What was accomplished under these goals? Under Objective 1, six soil cores (up to 1 m depth) from two different locations in Mississippi were collected using the Giddings probe. Upon transportation to the lab, each soil core was segmented to 5 depths followed by separating a sub sample for laboratory chemical analysis. The remaining soil samples were processed (air dried and ground) and scanned using MIR ATR, diffuse reflectance, and other spectrometers under various conditions (fresh, 2 mm sieved, and fine ground). Soil sampling campaign is targeting 25 soil series in Mississippi and underway. For Objective 2, a Zirconia ATR probe was purchased and used for initial signal testing. An unexpected moisture absorbance was observed and is currently under investigation to improve signal quality. Since the UGV was not delivered during the reporting period, all setup was done in the simulation environment using the Linux version compatible with Husky A300 (Ubuntu 24.04) and compatible ROS packages. Configuration files were developed to replicate onboard sensor parameters within the limitations of the simulation platform. Two form factors, namely a scaled-down version of Husky A300 and a full-scale model, were implemented, which allows both current and future debugging and testing before deployment to physical hardware. Autonomous navigation was implemented using an open-source ROS2 package, and this functionality currently works only for pre-mapped terrains. A path planning algorithm was implemented as a standalone ROS2 package and tested in multiple versions to assess performance and suitability. A basic UI was developed to test ROS2 integration and platform compatibility. Initial controls included robot spawning, feedback monitoring, log displaying, and a master kill switch. This early design supported planning for the final version, focusing on usability and feature expansion.

Publications