Source: NATAUR LLC submitted to NRP
PHASE II: MICROBIAL FERMENTATION OF TAURINE FOR THE SUSTAINABLE PRODUCTION OF A NUTRITIONAL INGREDIENT
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1031105
Grant No.
2023-33610-40710
Cumulative Award Amt.
$650,000.00
Proposal No.
2023-03950
Multistate No.
(N/A)
Project Start Date
Sep 1, 2023
Project End Date
Aug 31, 2025
Grant Year
2023
Program Code
[8.5]- Food Science & Nutrition
Recipient Organization
NATAUR LLC
6204 BLACKBURN LN
BALTIMORE,MD 212122515
Performing Department
(N/A)
Non Technical Summary
Taurine, an essential nutrient for human and animal health, naturally occurs in meat and other animal products. As we shift to more plant-based food and feed diets, taurine must be added as an ingredient or a supplement to maintain healthy taurine levels. Currently, three foreigncompanies produce 85% of the world's taurine supply using a petroleum-based process that harms humans, animals, and the environment. The overall project goal is to produce a cost-competitive non-petroleum source of taurine using a bio-based solution with renewable resources. Our approach uses recombinant microbes as bio-factories in a fermentor with simple sugar and natural compounds to produce taurine. The bio-based taurine could be added as a nutritional ingredient in alternative protein products or used in a broad range of market sectors, including food, feed, and personal care. Thisproject aims to establish a minimum viable process for the commercial production of pure bio-based taurine. To achieve this goal, (1) genetic modifications will be applied to increase taurine production by overexpressing genes in the serine precursor pathway, deregulating genes in the sulfur pathway, and constructing ordered assemblies of peptides in the taurine pathway, and (2) a downstream processing (DSP) protocol will be developed. This project addresses the USDA NIFA goal to contribute to the nation's energy independence through sustainable production of bio?based products and with the aim of the Food Science and Nutrition topic area to develop new and improved technologies and products that enhance the nutritional quality of foods.
Animal Health Component
67%
Research Effort Categories
Basic
0%
Applied
67%
Developmental
33%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
7014010104080%
7014010100020%
Goals / Objectives
The overall project goal is to produce a cost-competitive non-petroleum source of taurine by applying a biology-based solution that uses clean and renewable resources. Our approach uses recombinant microbes as bio-factories in a fermentor with simple sugars and natural compounds to produce taurine. The bio-based taurine could be added as a nutritional ingredient in alternative protein products or used in a broad range of market sectors, including food, feed, and personal care. This project aims to establish a minimum viable process for the commercial production of pure biobased taurine. To achieve this goal, genetic modifications will be applied to increase taurine production by overexpressing genes in the serine precursor pathway, deregulating genes in the sulfur pathway, and constructing ordered assemblies of peptides in the taurine pathway. In addition, a downstream processing (DSP) protocol will be developed. The technical objectives of this project are as follows:1. To increase taurine levels 5-fold by overexpressing genes in the serine precursor biosynthetic pathway.2. To increase taurine levels 3-fold by deregulating genes in the sulfur pathway.3. To increase taurine levels 5-fold by using peptide scaffolding in the taurine biosynthetic pathways and precursor pathways.4. To develop an effective DSP protocol for taurine that achieves 80% yield and 97% purity.Successful completion of the project is expected to result in a bio-based production system for taurine that can be used to manufacture a cost-competitive, non-petroleum source of taurine in the United States.
Project Methods
Standard molecular biology techniques will be used to achieve the first two objectives. For the first objective, we will overexpress genes in the serine precursor biosynthetic pathway to increase carbon availability to the taurine pathway. To address the second objective, we will perform a series of knock-ins to deregulate the expression of key genes in the sulfur uptake and reduction pathways. For each objective, constructs will be made and transformed into specific cell lines. For each gene construct/cell line combination, three independent colonies will be picked, PCR confirmed, grown under standard conditions, and taurine will be determined by HPLC analysis. Descriptive statistics will be calculated on the taurine levels. The cell line with the highest median taurine level will be moved forward to the next step. To address the third objective, we will use established protocols of peptide scaffolding to increase flux through targeted molecules in the taurine biosynthetic and precursor pathways. Scaffolding is the physical linking of enzymes by small peptide linkers to increase flux through targeted molecules and bias the efficiency of one pathway over a competing one. We will develop nine linkers with a range of flexibilities. Once assembled and validated by sequence analysis, each of the nine linked constructs will be independently transformed into specific cell lines. The nine lines will be grown simultaneously with a line containing unlinked enzymes under the same conditions. Since the 10 different constructs will share the same genetic background, any differences observed can be attributed to the differences among the linkers. Taurine levels will be determined and compared across constructs to determine which linker construct produces the highest taurine level. A comparison of the taurine levels in the lines with a linker will be compared with the line without the linker to determine whether taurine production is improved by a scaffolding approach.To develop an effective downstream processing (DSP) protocol (the fourth objective), we will run a 10-L batch-fed fermentation on the highest taurine-producing line at the time. Throughout the development of the DSP protocol, samples will be collected before and after each step, analyzed by HPLC analysis to quantify the taurine concentration, and the recovery or loss of taurine will be calculated. The first step in the DSP protocol will be cell removal by high-speed centrifugation. Samples from the supernatant and pellet will be separately analyzed. Before initiating ion chromatography, small particles in the supernatant must be removed by filtration to preserve the integrity of the chromatography resins. Next, the supernatant will be concentrated by freeze drying and then purified using chromatography. We will test various types of chromatography resins to determine the one(s) that provide the highest purity. The next step in the process is ethanol precipitation. This step will remove impurities and further concentrate taurine for the final crystallization step. Taurine crystals will be harvested on Whatman filter by vacuum filtration and tested at different drying temperatures. The purity of the dried taurine crystals will be assessed again. We expect a purity level greater than 97%. If it is lower, the samples will be recrystallized and re-assayed for purity.

Progress 09/01/23 to 08/31/24

Outputs
Target Audience:The target audiences we focused on during the reporting period included companies that use taurine to make products: scientists and manufacturers who formulate and make the products; business leaders who need to meet consumer demand for healthier and sustainable ingredients; and supply chain buyers who require reliability and fast turnaround. Our target audience also included scientists who are interested in developing new technologies to improve the production yield of sulfur-based compounds. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?We have provided one-on-one mentorship to a recent PhD graduate and have provided opportunities to build his skill set with novel approaches within metabolic engineering and cloning. How have the results been disseminated to communities of interest?Our major outreach has been to potential customers. We have submitted a PCT patent application and a provisional application. What do you plan to do during the next reporting period to accomplish the goals?In the next reporting period, we plan to complete the second half of our stated goals, namely: Objective 3: To increase taurine 5-fold by using peptide scaffolding in the taurine biosynthetic and precursor pathways We plan to proceed with the scaffolding which is the physical combination of enzymes to increase flux through targeted molecules. We plan to use peptide linkers as scaffolds as described in the proposal. Objective 4: To develop an effective DSP protocol for bio-based taurine that achieves 80% yield and 97% purity We will develop an efficient and cost-effective downstream-processing(DSP) protocol. To do so, we will first run a 10-L batch-fed fermentation using our best-performing line to obtain material to develop the DSP protocol. We plan to follow the protocol that we have outlined in the proposal.

Impacts
What was accomplished under these goals? Problemyour project addresses:Taurine is an essential nutrient for humans and animals found in hundreds of everyday products including nutraceuticals, food, beverages, infant formula, personal care products, and pet food. Taurine is needed for cardiovascular, skeletal muscle, vision, and nervous system function. Itis naturally occurring in meat and other animal products, but it is not found in plants, fungi, or most single-cell organisms. Today, nearly all the 160,000 tons of taurine aremanufactured in China from petrochemicals, whichare harmful to people, animals, and the environment. The process uses a carcinogenic and hazardous air pollutant as an intermediate and has toxic byproducts. In addition, the process has high carbon emissions. Bio-based processes can reduce carbon emissions by up to 80-90%. The overall project goal is to produce a cost-competitive, non-petroleum source of taurine by applying a biology-based solution that uses clean and renewable resources.Bio-based taurine meets consumers' demand for healthy and sustainable ingredients and has societal benefits on the environment and human health. Who or what will be most immediately helped by your work, and how. (1) Manufacturers of products that use taurine in their products will benefit from having non-petroleum-based taurine. This will address the demands of their customers, the consumers, who want sustainably produced ingredients. Manufacturers will also benefit from lower carbon emissions from a non-petroleum-based taurine. Impending regulations require companies to report on the greenhouse gas emissions of their production process and supply chain. (2) Humans and animals will benefit from cleaner air and water from a bio-based process of taurine production. (3) The environment will benefit from a bio-based process of taurine production, which has lower carbon emissions and no toxic by-products or carcinogenic intermediates to pollute the air and water. Following are the results from the Phase II experiments to date: Objective 1: To increase taurine levels 5-fold by overexpressing genes in the serine precursor biosynthetic pathway Major activities: The taurine biosynthetic pathway requires nitrogen, carbon, and sulfur. For Nataur's taurine pathway, carbon is supplied from components in the serine pathway. To increase taurine levels, we modified the serine pathway to funnel more serine to the taurine pathway and thereby increase the carbon flow. Standard molecular biology protocols were used, and the cells were grown in a basic media under standard growing conditions. Data collected: Samples were collected at 48 hours, and the taurine content was determined by HPLC analysis. Cells were pelleted out of the solution, and the taurine content of the liquid (supernatant) was assessed. Summary statistic and discussion of results: The median level of taurine produced by the microbes with the serine-modified pathway was 4.8 times higher than the level of taurine produced by the microbes without the modified serine pathway. Providing more carbon to the taurine pathway significantly increased taurine production. Objective 2: To increase taurine levels 3-fold by deregulating genes in the sulfur pathway Major activities:Sulfur-based precursors for taurine biosynthesis come from the sulfur uptake and reduction pathways. To increase activity in the sulfur uptake and reduction pathways, we deregulated the expression of key genes in the pathways by performing a series of knock-ins. Standard molecular biology protocols were used, and the cells were grown in a basic media under standard growing conditions. Data collected: Samples were collected at 48 hours, and the taurine content was determined by HPLC analysis. Summary statistic and discussion of results: The median level of taurine produced by microbes within the deregulated sulfur pathways was 20% higher than the level of taurine produced by microbes without a deregulated sulfur pathway. Higher taurine levels were achieved when the sulfur pathway was more active. Describe the key outcomes realized.Agoalof this Phase II project is to further increase taurine production by optimizing carbon and sulfur utilization in the taurine biosynthetic pathway. In the first year of the grant period, we focused on increasing the availability of carbon skeletons and sulfur and as such increased taurine production nearly 6-fold.

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