Source: ASTALAKE BIOSYSTEMS, INC. submitted to
GENERATION OF ALFALFA PLANTS WITH OPTIMIZED LIGNIN BIOSYNTHESIS FOR IMPROVED FORAGE QUALITY AND YIELD
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1030042
Grant No.
2023-33530-39280
Cumulative Award Amt.
$181,500.00
Proposal No.
2023-01159
Multistate No.
(N/A)
Project Start Date
Jul 1, 2023
Project End Date
Jun 30, 2024
Grant Year
2023
Program Code
[8.2]- Plant Production and Protection-Biology
Project Director
Oikawa, A.
Recipient Organization
ASTALAKE BIOSYSTEMS, INC.
6363 CHRISTIE AVE #2411
EMERYVILLE,CA 946081948
Performing Department
(N/A)
Non Technical Summary
The world is facing unprecedented challenges in food systems (i.e., on farm profitability and public demand for environmental health) due to climate change, water scarcity, diminution of arable lands, and population increase to nearly 8 billion people. Alfalfa (Medicago sativa) is a perennial nitrogen-fixing legume with tremendous potential benefits to soil health, environmental health, and contribution to animal and human nutrition. As one of the world's oldest domesticated forage crops, alfalfa is grown on six continents and is the fourth most important economic crop in the United States. Traits such as higher yields, stress tolerance, and biomass quality (improved digestibility and nutrient composition) have been targeted by alfalfa breeders to benefit farmers, cattle growers, and beef/dairy industries. In this SBIR project, Astalake Biosystems' state-of-the-art synthetic biology technology offers significantly improved forage alfalfa with a combination of beneficial traits - higher biomass yield per acre, improved digestibility (high quality), and increased stress tolerance. Enabled by our biotechnology platform, these traits will contribute to the USDA strategic goals "1: Combat climate change to support America's working lands, natural resources, and communities", "2: Ensure America's agricultural system is equitable, resilient, and prosperous", "3: Foster an equitable and competitive marketplace for all agricultural producers", "4: Provide all Americans safe, nutritious food", and "5: Expand opportunities for economic development and improve quality of life in rural and tribal communities". The technology will offer high yield, high quality, and climate-smart advantages in alfalfa as animal feed and potential bioenergy/biorefinery feedstocks. Thus, the project is significantly connected to USDA priority areas: "Agriculturally-related manufacturing technology" and "Energy efficiency and alternative and renewable energy."
Animal Health Component
100%
Research Effort Categories
Basic
(N/A)
Applied
100%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
5021699101025%
5021699102025%
5021699104050%
Goals / Objectives
This SBIR project aims to develop an efficient approach to fine-tune lignin biosynthesis and biomass composition while increasing biomass yields in alfalfa. Moreover, an additional feed quality trait enabled by our genetic engineering strategy to mitigate enteric methane emissions will potentially improve the sustainability of meat and milk production. Our molecular, metabolic, and phenotypic characterizations of newly engineered alfalfa lines generated in Phase I will represent valuable material for 1) future verification at greenhouse/field environments and 2) trait transfer into elite germplasms via licensing and breeding.
Project Methods
Astalake Biosystems will generate a total of six DNA constructs that contain 1) a selection marker gene required in alfalfa transformation and 2) target gene under the control of six specific promoters. These six constructs andone control construct containing only the selection marker will be transferred to alfalfa to generate transgenic lines expressing the targetgenes. Several genetic events will be generated in commercially viable germplasm developed by the UC alfalfa breeding program. The first generation of transgenic lines will be developed and maintained in plant growth chambers, characterized for viability, gene cassette integration, and transgene expression. Detailed morphological and biomass composition analyses will be performed once the plants have sufficiently developed. As several alfalfa lines will be generated, the yield and quality data will be used in Phase II/III for greenhouse and field verifications to identify the best genetic events that possess enhanced yield, drought tolerance, higher digestibility, and anti-methanogenic properties.

Progress 07/01/23 to 06/30/24

Outputs
Target Audience:The target audience(s) of this project generating low-lignin high-qualityalfalfa varieties are key players in the $19 billion U.S. forage market and the $120 billion U.S. meat & dairy industries. Commercialization of Astalake Bio's technology offers an increase in yields while fine-tuning lignin deposition in cell walls, thereby ameliorating alfalfa feed quality and growers' revenue. Currently, there are two genetically engineered low-lignin alfalfa products on the market: HarvXtra® that was developed by Forage Genetics International (FGI) and "IQ Alfalfa (IQA™)" that was developed by Calyxt, Inc in collaboration with Alfalfa Partners® at Seed Co.FGI used a RNAi method and Calyxt used the TALEN genome-editing method to silence key lignin genes COMT and/or CCoAOMT to reduce lignin in alfalfa biomass. Astalake Bio'slow-lignin technology applied to alfalfa could potentially outperform the abovementioned HarvXtra® and IQA™ varieties due to competitive advantages: Higher yielding and biomass quality (high digestibility) combined with novel anti-methanogenic properties (mitigation of cattle lethal bloat and GHG emissions). Our approach is ultimately compatible with the genetic introgression to other elite germplasms via crossbreeding and can also be stacked with other beneficial traits (for example, herbicide tolerance: Roundup Ready®) via licensing, partnerships, and collaborations. If the demonstrated Phase I project outcomes will be verified at greenhouse/field environments in future research phases, the verifiedbiotechnology platform could be applied to other perennial forage/pasture species that currently cover 121.1 million acres in the United States (6% of the U.S. surface area). Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? We generated the initial low-lignin genetic events introduced in an alfalfa elite variety. The molecular, metabolic, and phenotypic characterizations fromselected best eventsgrown in laboratory settings revealed the targeted increase in biomass yield accompanied by reduced cell wall lignin content and ruminant enteric methane emission with in vitro measurements. These outcomes potentially contribute to improving alfalfa farming profitability, feed digestibility, and livestock performance for efficient meat and milk production. Plant biotech researchers have been generating a series of low-lignin alfalfa lines with transgene-free genome editing (i.e., CRISPR and TALEN) or RNAi approaches that reduce expression of lignin biosynthetic genes. One disadvantage of these approaches is the requirement for genome sequence information in targeted plant varieties, which is not always available. The Astalake Bio's low-lignin technology applied to alfalfa could potentially outperform the abovementioned engineeredlines due to its dominant genetic characteristics that maintain the traits for future crossbreeding.

Publications