Source: MYCOLOGICS LLC submitted to
A NOVEL BIOBASED APPROACH FOR MANAGING ROOT ROT IN SUGAR BEET INDUSTRY
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
ACTIVE
Funding Source
Reporting Frequency
Annual
Accession No.
1030036
Grant No.
2023-33530-39279
Cumulative Award Amt.
$175,000.00
Proposal No.
2023-01149
Multistate No.
(N/A)
Project Start Date
Jul 1, 2023
Project End Date
Feb 28, 2025
Grant Year
2023
Program Code
[8.2]- Plant Production and Protection-Biology
Project Director
Chanda, A.
Recipient Organization
MYCOLOGICS LLC
7551 FORDSON RD
ALEXANDRIA,VA 22306
Performing Department
(N/A)
Non Technical Summary
The U.S. sugar beet industry contributes to 55-60% of the national sugar production and creates 140000 jobs in over 20 states with ~$20B annual positive input to the economy. However, with the ongoing climate changes, the industry is facing an increasing threat from a root rot disease known as Rhizoctonia Crown and Root Rot (RCRR), caused by a fungal pathogen Rhizoctonia solani, together with a bacterial pathogen, Leuconostoc mesenteroides. The pathogens infect the crop in the field and then degrade it and its sugar during storage. Additionally, L. mesenteroides produces dextran during sucrose fermentation, which plugs the factory filters leading to a severe drop in processing efficiency. Growers lose several millions of dollars of profits annually as a result. This project aims to develop a naturally-derived antimicrobial formulation that can prevent RCRR. Preliminary data indicated that one bioactive component in the envisioned formulation could inhibit both R. solani and L. mesenteroides and prevent RCRR in artificially infected roots. Hence phase I will characterize thebioactive potential of the formulation in greater detail and test the feasibility of the envisioned product formulation in preventing RCRR in field conditions, which will lead to the commercialization of the innovation. Also, it will pave the way for new applications of the innovation to prevent root rot issues in other crops. This will expand Mycologics' product portfolio and strengthen the company's business model of entering into a product licensing agreement with a global Agricultural Technology company for faster market penetration.
Animal Health Component
100%
Research Effort Categories
Basic
0%
Applied
100%
Developmental
0%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
21520101060100%
Goals / Objectives
The overarching goal of this project is to develop a biobased approachto combat the increasing problem of Rhizoctonia Crown and Root Rot (RCCR) in the sugar beet industry. RCCR is caused by a fungal pathogen,Rhizoctonia solanitogether with a bacterial pathogen,Leuconostoc mesenteroides.The pathogens infect the crop in the field and then degrade it and its sugar during storage. Additionally,L. mesenteroides produces dextran during sucrose fermentation, which plugs the factory filters leading to a severe drop in processing efficiency. As a result, a huge amount of energy that goes into growing the crop is wasted, andsugar beet growers lose several milliondollars worth of profits every year.Mycologics' innovative approach hinges on a naturally-derived antimicrobial formulation that can be applied as a spray and seamlessly integrated with the existing pre- and postharvest treatment protocols.The specific goal of this phase I project is to establish the technical feasibility of the formulation to combat RCCR in the sugar beet crop and lead to the commercialization of the proposed approach. Two technical objectives that will be addressedin this project are as follows:Objective 1: The dose of the formulation that can lead to >95% growth inhibition ofpure cultures of R. solaniand L. mesenteroides will be determined.Simultaneously, the bioactive components comprising the formulation will also be determined.Objective 2: The dose of the formulation that best preventsR. solaniandL. mesenteroidesinfections in artificially infected sugar beets and sugar beet extracts will be then determined. The doses selected for this studywill be based on the dose that causes >95% reduction ofR. solaniandL. mesenteroideswhen grown as pure cultures under objective 1.
Project Methods
As a part of the first technical objective (TO-1), Mycologics will grow and maintain the bacterium that will lead to the antifungal formulation. The extraction of bioactive compounds will be conducted with organic solvents such as acetone and methanol. The bacterial extract will then be analyzed for the bioactive compounds usinghigh-performance liquid chromatography-mass spectrometry (HPLC-MS).Using the knowledge and quantities of the bioactive component(s) in the bacterial extract,a dose-response experiment will be performed using 6 arbitrarily determined doses to determine the dose needed for >95% reduction of R. solani and L. mesenteroides in pure cultures. Experiments will be conducted in triplicate, and statistical significance will be determined using an unpaired t-test for n=3 with p<0.05 as the condition of statistically significant difference.Success for TO-1 will be established through the following: (1) determining the minimal dose of the bacterial extract needed for significant reduction of R. solani and L. mesenteroides growth, (2) determining the dose of the extract that causes>95% reduction of R. solani and L. mesenteroides growth, and(3)identifying the key bioactive components and their quantities in the extract.Based on the dose that will lead to>95% reduction ofR. solaniandL. mesenteroidesin pure cultures, adose-response study with sugar beet roots and factory-processed sugar beet extracts will be conducted in collaboration with the NWISRL-ARS as technical objective 2 (TO-2). Three different treatment doses of the bacterial extracts will be used for these experiments.A total of 40 randomly picked healthy sugar beet plants (cultivar B-7; Betaseed Inc.; Kimberly, ID; planted in late April/early May) actively growing in the field will be divided into 5 experimental groups (with n=8 per group) out of which 4 groups will be artificially co-infected with R. solani and L. mesenteroides.Briefly, a cork borer will be used to create a 10 mm diameter x 24 mm deep hole. Then, 0.1 mL of a 108 CFU mL-1 suspension of L. mesenteroides inoculum prepared using yeast dextrose calcium carbonate agar will be introduced in that hole along with a 2 x 2 mm piece of mycelial mass of R. solani grown in potato dextrose broth for 10 days at 22°C inside a benchtop shaker. After inoculation, the plug will be replaced and sealed with petroleum jelly. Out of the 4 infected groups, 3 treatment groups will receive three different doses of bacterial extracts. The 4th infected group (the positive control group) will not receive any treatment but will receive an equal volume of the DMSO (vector). In addition, there will be a non-infected and untreated control group (the negative control group) which will not be infected but will receive a mock inoculation with 0.1 mL of sterile water and a mock treatment with DMSO.Root rot will be evaluated at 2 months post-inoculation by comparison of the extent of root rot, root surface discoloration, root weight loss, and root sucrose loss in the treated and untreated sugar beets using NWISRL standardized protocols. Briefly, roots will be weighed, and a surface rot evaluation (percent of discolored root surface area) will be conducted before storing the roots post-inoculation. Then after the 2-month storage period, the roots will be reweighed to determine the reduction in root weight during the storage period. Surface root rot evaluation will be performed by sectioning the roots vertically and then measuring the maximum root rot diameter. Also, an assessment of fungal growth on the surface of each root in each group will be done to determine and compare the percentage of root area covered by fungal growth.Finally, to assess sucrose loss during the storage period, a comparison of the percentage sugar loss per root per group will be performed using established NWISRL protocols.In addition to root rot evaluation, an additional dose-response analysis will be performed to determine the effectiveness of the bacterial extract for preventing L. mesenteroides growth in factory-processed sugar beet extracts. For this experiment, 3 randomly picked different batches of sugar beet extract [representing 3 biological replicates] will be used. Each batch of extract will be divided into 5 equal-volume aliquots, out of which 4 aliquots will be artificially inoculated with 0.1 mL of a 108 CFU mL-1 suspension of L. mesenteroides inoculum prepared using yeast dextrose calcium carbonate agar and the 5th aliquot will be used as non-inoculated and untreated control (negative control). Among the 4 aliquots inoculated with L. mesenteroides, 3 aliquots will receive treatments with three different doses, and the 4th inoculated aliquot will not be treated and will represent the inoculated but untreated control (positive control). Growth of L. mesenteroides in the sugar beet extract will be monitored and compared by measuring optical density at 600 nm (OD600 values) within 48h period of storage at ambient temperature.Success for TO-2 will be defined by determining the dose of bacterial extractthat can (1) lead to >95% inhibition of root rot and (2) >95% inhibition of L. mesenteroides growth in the factory-processed sugar beet extracts. Thatdose will be used to design the minimal viable product (MVP) for large-scale production and commercialization activities in Phase II. During the finalization of MVP in phase II, experiments will also be conducted in collaboration with BSDF to determine if it is possible to control natural infection by R. solani in the field that can lead to seed treatment, a banded spray application, or direct sprays on roots going into storage or direct application to factory systems.

Progress 07/01/23 to 02/29/24

Outputs
Target Audience:Last November Mycologics has participated in the annual sugar beet stakeholder meeting at Kimberly, Idaho, where Dr. Chanda was able to conduct 15 customer discovery interviews including sugar beet growers (target audience) and members from Beet Sugar Development Board and Amalgamated Sugar Industry personnel (influencers). This interaction has provided additional evidence of the root rot problem and information on the current solutions that the farmers are using to address the problem. Most importantly, the influencers have indicated their willingness to connect Mycologics with other growers to conduct additional customer discovery interviews. Changes/Problems:The greatest challenge in approach stems from conflicting data from customers related to what product they think would benefit the most- whether an in-furrow or soil-drench mode of application that was originally envisioned in the proposal or a seed treatment product or a product that is ideal for both applications. Farmers from different geographical regions experience the problem at different stages of crop growth. However, given the data received thus far, a product compatible with both applications seems to be a good fit. However, that also means a modification to product composition, which will warrant an additional field trial. We will, therefore, apply for a 12-month no-extension for this project. During this period, we also aim to conduct additional customer discovery interviews that can help us finalize a compelling business model for commercialization and identify the farmers who will participate in the large-scale field trials during the commercialization period. What opportunities for training and professional development has the project provided?Two scientists who are currently technicians at NWISRL have received the opportunity to be trained on this project at NWISRL. Mycologics aims to onboard one of them as a Research Associate (FT) during the phase II period. Additionally, an MBA graduate student from Duke University, aspiring to move into the Ag Industry, received the opportunity to participate in a project related to market research to analyze the sugar beat crop production market, identify customer needs, and assess competition. How have the results been disseminated to communities of interest?Some initial (non-technical finidings) have been shared with the target audience during the Sugar beet stakeholder meeting at Kimberly,ID, in Nov 2023 What do you plan to do during the next reporting period to accomplish the goals?1) Related to objective 1, we aim to conduct a more comprehensive characterization of our product and the bacteria being used to product it; the knowledge is critical for EPA registration. 2) Related to objective 2, we aim to obtain more data related to the product that we will commercialize. We aim to gather more evidence on the most effective mode of application to address the RCRR- whether to apply asa seed treatment product or to apply in furrow or soil-drench; the answer will be guided through - technical data (to be generated this year) and most importantly the customer discovery data (to understand the stage of growth where the growers experience the most pain.

Impacts
What was accomplished under these goals? The problem that this project addresses and the target audience: The project is addressingthe ongoing Rhizoctonia Crown and Root Rot (RCCR) problem in the sugar beet industry, which leads to the waste of millions of dollars worth of crops as well as energy and water associated with growing these crops.Sugar beet growers facing these issues, especially in the states of Colorado, Idaho, Michigan, Montana, Nebraska, Wyoming, and Oregon, will benefit most from this project. Goal of Phase I: The specific goal of this phase I project is to establish the technical feasibility of an antimicrobialformulation to combat RCCR in the sugar beet crop that can lead tothe commercialization of the product and the proposed approach.Two specific objectives were proposed for this project and the major activities completed under each specific aim is described below for this reporting period: Major activities completed under objective 1 (which proposed to identify a formulation and a dose that can lead to >95% growth inhibition ofpure cultures ofR. solaniandL. mesenteroides):We have optimized the process of making the formulation and identified the dose that leads to>95% growth inhibition ofpure cultures ofR. solaniandL. mesenteroides.We are currently in the process of analyzing the formulation that will be critical for EPA registration. Major activities completed under objective 2 ( which proposed to find thedose of the formulation that best preventsR. solaniandL. mesenteroidesinfections in artificially infected sugar beets and sugar beet extracts)- we have already initiated those field experiments. The beets show significant improvement in biomass and visible analysis were clearly indicative of decreased rot. We should have quantitative data available within the current year reporting period. We also realized the need for additional experiments to understand the best mode of application- whether as a seed treatment or as in-furrow or soil drench applications for which we will apply for a no-cost extension. Key outcomes or other accomplishments realized- We have obtained significant evidence in favor of our technology in addressing the RCCR problem and are on-track to commercialize the approach as envisioned in the phase I proposal. The field experiments performed during the past year have also presented us with some "mode of application" related questions that will guide our commercialization plan.

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