Source: PURDUE UNIVERSITY submitted to
UNDERSTANDING CARBON AND WATER DYNAMICS OF PERENNIAL CROPS IN RESPONSE TO WATER STRESS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1029700
Grant No.
2021-67034-39050
Cumulative Award Amt.
$84,823.22
Proposal No.
2022-11202
Multistate No.
(N/A)
Project Start Date
Aug 15, 2022
Project End Date
Jun 14, 2024
Grant Year
2023
Program Code
[A7201]- AFRI Post Doctoral Fellowships
Project Director
Furze, M.
Recipient Organization
PURDUE UNIVERSITY
(N/A)
WEST LAFAYETTE,IN 47907
Performing Department
(N/A)
Non Technical Summary
Drought impacts the tightly interrelated systems of carbon and water transport, yielding a complex problem for plants. During water stress, plants close the pores on their leaves to prevent water loss, but this also prevents carbon uptakethrough those same pores. Plants ultimately succumb to water stress by carbon starvation through reduced carbon capture ("suffering from hunger") and hydraulic failure through reduced water transport("suffering from thirst"). However, the physiological mechanisms underlying the different ways in which plants respond to water stress remain poorly understood. This knowledge gap hinders our ability to predict how plants will respond over the second half of the 21st century as the intensity and severity of droughts are projected to increase. This work will focus on the challenge of water stress for agricultural crops due to the biological, social, and economic consequences. The overarching goal is to 1) advance our understanding of carbon and water dynamics in crops under water stress, 2) improve our ability to predict which crops are most at risk of damage under global change, and 3) inform management strategies for irrigation and crop selection to optimize agricultural production. To accomplish this goal, tools from plant physiology will be combined with cutting-edge microCT imaging and machine learning technology to study the physiological responses of economically important woody perennial crops under experimental drought and field conditions. This work will advance our understanding of crop plant stress physiology, and has broader implications for ensuring the health and production of agricultural crops in a changing world.
Animal Health Component
20%
Research Effort Categories
Basic
80%
Applied
20%
Developmental
0%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2061212102030%
2061131102030%
2061219102040%
Goals / Objectives
Major goals:The goals of thisproject (from the original fellowship award) are to advance our understanding of carbon and water dynamics in agricultural crops in response to stress, improve our ability to predict which agricultural crops are most at risk of damage under global change, and inform management strategies to optimize and maintain agricultural production. To accomplish these goals, wehave been using and will continue to use tools from plant physiology with cutting-edge microCT imaging to study California's economically important woody perennial crops in both greenhouse-based and field-based experiments.Remaining objectives: We completed a greenhouse-based drought experiment in which carbohydrate metabolism was compared between almonds, pistachios, and grapes. Following the drought treatment, the plants were scanned with X-ray microCT imaging at the Advanced Light Source to quantify the distribution and depletion of starch in the stem in response to water stress. Stem tissue was also collected for the measurement of nonstructural carbohydrates. We will analyze these samples for nonstructural carbohydrates in the laboratory. Furher, the microCT imaging has yielded a massive dataset that will require data processing using machine learning technology.We also collected field samples from hundreds of plants in a commercial vineyard and orchard where crop water use and stress are being mapped with remote sensing to inform irrigation management and heat wave mitigation. In the vineyard, nonstructural carbohydrates were measured in wine grapes to experimentally determine how varying irrigation practices prior to extreme heat events influences whole-vine physiology and carbon allocation. These data willbe analyzed. In the orchard, hundreds of samples from four almond varieties were collected biannually from trees within the footprint of an eddy covariance flux tower. These samples will be processed in the laboratory for nonstructural carbohydrates and for subsequent calculation of carbon budgets. Additionally, stem cores willbe collected from the trees and annual growth measurements will also be taken. These additional measurements will be essential for understanding whole-tree carbon allocation and linking tree-level physiology with ecosystem-level flux data at the site.
Project Methods
Methods: Thegreenhouse-based drought experiment allowed us to quantify the distribution and depletion of starch in the stem in response to water stress. ThemicroCT images of the stem will be processedusing machine learning technology. The data will be analyzed using statistical methods in R. The data will be interpreted with support from colleagues, farmers/growers, and experts in the field.We also collected field samples from hundreds of plants in a commercial vineyard and orchard. In the vineyard, nonstructural carbohydrates were measured in wine grapes to experimentally determine how varying irrigation practices prior to extreme heat events influences whole-vine physiology and carbon allocation. These data were analyzed with statistical methods in R.In the orchard, hundreds of samples from four almond varieties were collected biannually from trees within the footprint of an eddy covariance flux tower. These samples will be processed in the laboratory for nonstructural carbohydrates and for subsequent calculation of carbon budgets. Additionally, annual growth measuremnets from stem cores will also be taken. The tree-level growth measurements will be correlated with other pre-existing datasuch as ecosystem level tower fluxes, yield, and flower counts.Efforts and Evaluation:Our efforts to disseminate our project outcomes totarget audiencesinclude sharing our findings with growers and farm advisors through informal discussion and annual meetings, with the scientific community through peer-reviewed publications and conference presentations, with undergraduate and graduate students through direct involvement in the research activities as well asthrough lectures in courses, and with the general public through outreach programs and social media. The project has been successfully completed by approximately 60% and is on track for continued success. The experimental and fieldwork components have yielded data that will be analyzed and prepared for dissemination in oral and written form.The continued success of the project will be measured by several key milestones, including 1) analyzing nonstructural carbohydrates, 2) analyzing microCT images with machine learning, 3) recruiting and mentoring undergraduate students, 4) performing statistical analyses, 5) presenting these data at annual conferences, and 6) preparing and submitting manuscripts to peer-reviewed journals. Research progress will be further communicated through lab meetings and seminars, and to the general public through participation in outreach and engagement on social media platforms.

Progress 08/15/22 to 06/14/24

Outputs
Target Audience:Over the project period,our team efforts reached a broad audience of scientists and non-scientists. A postdoctoral scholar, graduate student (M.S.),and an undergraduate student were involved in the data collection, processing, and analysis stages of the project. These individuals had the opportunity to engage with multiple audiences to conduct the research and communicate our findings. The graduate student attended the annual conferfence of Botany in Michigan, USA in June 2024 to present theresearch findings as a poster. The graduate student also attended the Midwest American Society of Plant Biologists conference at Purdue University in March 2024 to present the research findings as a poster. The PD shared results from the project with a broad scientific audience (23,700+ attendees) at the annual meeting of the American Geophysical Union in December 2022 in Chicago, USA.Additionally, through these research efforts, the research team has had the opportunity to engage with various stakeholders at the research sitesin California including orchard owners, growers, and managers. The data from the project has been continually communicated throughout the project periodto farm owners and managers at the research sites to inform orchard irrigation and management strategies to optimize crop production. The PD and research team arein the process of writing up the research findings in four scientific publications. The PD has also developted this project and findings into a course module at Purdue University to teach in an introductory plant biology course with an enrollment of 72 students. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Undergraduate students and a postdoctoral scholar were trained and mentored by the PD throughout the duration of the project. Undergraduate students learned how to conduct plant physiology measurements and analyze 3D image data sets with machine learning tools. The postdoctoral scholar was able to directly mentor undergraduate students to hone mentoring skills, in addition to learning new skills and techniques in plant physiology, imaging, machine learning technology, and scientific communication. PD was able to improve mentoring skills through weekly one-on-one meetings with each research team member and to improve managerial skills by coordinating the various projects associated with this award. How have the results been disseminated to communities of interest?The research team has disseminated research findingsat three different annual conferences in 2022-2024(American Geophysical Union, Botany, and Midwest ASPB). The results have been continuously shared with growers and farm owners at the research sites to optimize irrigation strategies and improve yield. Future disssemination of research findings tothe scientific communtiy is expected through a thesis defense and 4-5 scientific publications. The PD has also developed a course module to share this research with first year undergraduate plant science majors at Purdue, so that public understanding about the challenges of crop production in a changing world can be enhanced. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? 1. Greenhouse-based drought experiment to investigatecarbon metablism: We completed a greenhouse-based drought experiment in which carbohydrate metabolism was compared between almonds, pistachios, and grapevines. Following the drought treatment, the plants were scanned with X-ray microCT imaging at the Advanced Light Source to quantify the distribution and depletion of starch in the stem in response to water stress. An undergraduate student and postdoctoral scholar processed and analyzed the microCT imaging dataset using machine learning technology to quantify starch dynamics. These data are currently being analyzed and prepared for submission for scientific publication. 2.Greenhouse-based drought experiment to investigateroot exudation:We completed a greenhouse-based drought experiment in which root exudation was quantified in non-pareil almond saplings. Following drought treatments of different durations, root exudates were collected and the plants were fully harvested for quantification of whole-plant nonstructural carbohydrate reserves and determination of biomass. A graduate student is currently working with Purdue University's metabolomics center to quantify the composition of the collected root exudates. The graduate student will write this project up for a thesis chapter as well as scientific publication. 3. Field-based vineyard and orchard experiments: We collected field samples from hundreds of plants in a commercial vineyard and orchard where crop water use and stress are being mapped with remote sensing to inform irrigation management and heat wave mitigation. In the vineyard, we measured nonstructural carbohydrates in wine grapes to experimentally determine how varying irrigation practices prior to extreme heat events influences whole-vine physiology and carbon allocation. This work has been written upfor scientific publication and will be submitted in September 2024. In the orchard, hundreds of samples from four almond varieties were collected biannually from trees within the footprint of an eddy covariance flux tower. A graduate student analyzed all samples for nonstructural carbohydrates and for subsequent calculation of carbon budgets. Stem cores were also collected from the trees and prepared for dendrochonology. Annual growth measurements are currently being collected from these cores. These additional measurements will be essential for understanding whole-tree carbon allocation and linking tree-level physiology with ecosystem-level flux data at the site. This work will be written up as a chapter of the graduate student's thesis and will also be prepared for scientific publication in spring 2025.

Publications

  • Type: Journal Articles Status: Other Year Published: 2024 Citation: - In preparation manuscript: "NSC responses to irrigation manipulation during heatwaves in cabernet sauvignon" - This manuscript will be submitted for publication by September 2024
  • Type: Journal Articles Status: Other Year Published: 2024 Citation: - In preparation manuscript: "Seasonal dynamics of NSC reserves across almond varieties" - This manuscript is currently being written for submission by 2025
  • Type: Journal Articles Status: Other Year Published: 2025 Citation: - In preparation manuscript: "Root exudation in almond trees under drought" - The data for this manuscript is currently being analyzed and submission is expected in 2025
  • Type: Theses/Dissertations Status: Other Year Published: 2025 Citation: - The graduate student will defend a M.S. thesis in Spring/Summer 2025 which will contain two chapters related to this project: (1) Seasonal dynamics of NSC reserves across almond varieties, and (2) Root exudation in almond trees under drought
  • Type: Journal Articles Status: Other Year Published: 2024 Citation: - In preparation manuscript: "Carbon physiological responses of almonds, grapes, and pistachios to drought" - The data for this manuscript is currently being analyzed and submission is expected in 2025
  • Type: Conference Papers and Presentations Status: Other Year Published: 2022 Citation: - PD presented a scientific poster at the annual meeting of the American Geophysical Union in December 2022 in Chicago, IL
  • Type: Conference Papers and Presentations Status: Other Year Published: 2024 Citation: - Graduate student presented a scientific poster at the annual meeting of Botany in June 2024 in Michigan
  • Type: Conference Papers and Presentations Status: Other Year Published: 2024 Citation: - Graduate student presented a scientific paper at the Midwest American Society for Plant Biologists conference in March 2024 in Indiana


Progress 08/15/22 to 06/14/23

Outputs
Target Audience:During this reporting period, theproject reached a broad audience of scientists and non-scientists. At the university, a postdoctoral scholar and an undergraduate student were involved in the data collection, processing, and analysis stages of the project. Outside of the university, theproject allowed for direct interaction with growers. The data from theproject has been continually communicated to farm owners and managers at the research sites to inform irrigation and management strategies to optimize crop production. Preliminary results from theproject were shared with a broad scientific audience (23,700+ attendees) at the annual meeting of the American Geophysical Union in December 2022 in Chicago, IL. The PD is in the process of writing up the research findings for scientific publication for one of the aims of theproject. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? An undergraduate student and postdoctoral scholarwere trained and mentored by the PD throughout this reporting period. The undergraduate student is currently working on theproject as a summer research experience. The undergraduate student and postdoctoral scholarhavebeenable to learn new skills and techniques in plant physiology, imaging, and machine learning technology. The PD has beenable to hone mentoring skills. How have the results been disseminated to communities of interest? The PD has shared preliminary results from the project with colleagues. The PD shared results from the field-based experiments at the annual meeting of the American Geophysical Union in December 2022. The results have been shared with growers and farm owners to optimize irrigation strategies. Results from one of the objectives are currently being written up as a manuscript for publication. What do you plan to do during the next reporting period to accomplish the goals?The PD has requested a no cost extension to bring this project to completion during the next reporting period. The following action items will be completed during the next reporting period to accomplish the project goals: Greenhouse-based drought experiment: 1. Measure nonstructural carbohydrates in almonds, pistachios, and grapevines from greenhouse drought experiment 2. Continueprocessing the microCT imaging dataset using machine learning technology to look at spatial distribution of starch in the stems of almonds, pistachios, and grapevines 3. Data analaysis and write manuscripts Field-based vineyard and orchard experiments: 1. Write manuscript about grapevine carbon allocation in response to different irrigation strategies surrounding heat waves 2.Measure nonstructural carbohydrates in four varieties of almonds 3. Measure ring widths in prepared cores of four varieties of almonds 4. Data analysis and write manuscripts

Impacts
What was accomplished under these goals? Drought poses a signficiant threat to the health and production of agricultural crops. It is essential to understand how agricultural crops will physiologically respond to drought to better inform management strategies for irrigation and crop selection in a changing world. To accomplish this goal, tools from plant physiology were combimed with cutting-edge 3Dimaging and machine learning technology to study the physiological responses of of threeeconomically important perennial crops to experiment drougth and heat waves: grapevines, pistachios, and almonds. The knowledgegenerated provides insight into the longer-term goal of understanding the impact of climate change on agricultural crops and informs management strategies for irrigaiton and crop selection to maximize crop growth and yields in a changing world. 1. Greenhouse-based drought experiment: We completed a greenhouse-based drought experiment in which carbohydrate metabolism was compared between almonds, pistachios, and grapevines. Following the drought treatment, the plants were scanned with X-ray microCT imaging at the Advanced Light Source to quantify the distribution and depletion of starch in the stem in response to water stress. Stem tissue was also collected for the measurement of nonstructural carbohydrates. We need to analyze thesesamples for nonstructural carbohydrates in the laboratory. An undergraduate student and postdoctoral scholar arecurrentlyprocessing the microCT imaging dataset using machine learning technology. 2. Field-based vineyard and orchard experiments: We also collected field samples from hundreds of plants in a commercial vineyard and orchard where crop water use and stress are being mapped with remote sensing to inform irrigation management and heat wave mitigation. In the vineyard, we measured nonstructural carbohydratesin wine grapes to experimentally determine how varying irrigation practices prior to extreme heat events influences whole-vine physiology and carbon allocation. These data were presented at the annual meeting of the American Geophysical Union and are currently being written up as a manuscript for publication. Inthe orchard, hundreds of samples from four almond varieties were collected biannually from trees within the footprint of an eddy covariance flux tower. These samples need to be processed in the laboratory for nonstructural carbohydrates and for subsequent calculation of carbon budgets. Stem cores were collected from the trees and prepared for dendrochonology. Annual growth measurements need to be taken from these cores. These additional measurements will be essential for understanding whole-tree carbon allocation and linking tree-level physiology with ecosystem-level flux data at the site. This awardwas transferred from UC Davis to Purdue University where the PD started herlaboratory in August 2022. Funds were not accessibleuntil April 2023. The PD and teamwere able to make some progress from August 2022-April 2023, but were limited until the funds arrived and have since requested a no cost extension to complete the above project goals and objectives to bring the project to completion.

Publications