Source: Pan Genome Systems, LLC submitted to
MULTIVALENT VACCINES AGAINST INFECTIOUS BRONCHITIS VIRUS (IBV)
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1025798
Grant No.
2021-33530-34398
Cumulative Award Amt.
$99,979.00
Proposal No.
2021-00684
Multistate No.
(N/A)
Project Start Date
Jul 1, 2021
Project End Date
Feb 28, 2023
Grant Year
2021
Program Code
[8.3]- Animal Production & Protection
Project Director
Phanse, Y.
Recipient Organization
Pan Genome Systems, LLC
2314 Bedner Rd
Madison,WI 53719
Performing Department
(N/A)
Non Technical Summary
Infectious Bronchitis (IB) is an economically important severe respiratory infectious disease of poultry caused by IB coronavirus (IBV). The USA animal state health report identifies IBV as a critical source of economic loss in the broiler and egg laying industry. There is significant room for improvement in current vaccines available for IBV. Innovative technologies that can address the tremendous genetic variation of IBV and the poor cross- reactive immunity induced by conventional vaccines are desperately needed. Our proposed vaccine platform overcomes limitations of current commercial vaccines by employing subunit "mosaic" antigens expressed by a safe plasmid DNA vector that should induce broad protective immunity from a single immunization. Supported with a strong set of preliminary results, this project will: First, test the hypothesis that IBV mosaic antigens can be safely delivered via high-throughput routes of immunization (e.g. intranasal, in ovo) and still generate a robust immune responses against avian coronavirus. Second, evaluate the cross protective efficacy of mosaic vaccine constructs against challenge with multiple strains of IBV in the target species, chickens. Successful completion of this project will directly lead to the development of a highly effective, easy-to-dose, broadly reactive IBV vaccine for immediate global commercialization by Pan Genome Systems. Knowledge gained from these studies will greatly aid us in understanding how to elicit broader immunity to IBV and how to produce a successful vaccine against this important respiratory infection.
Animal Health Component
60%
Research Effort Categories
Basic
10%
Applied
60%
Developmental
30%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
3113299109050%
3113299110150%
Knowledge Area
311 - Animal Diseases;

Subject Of Investigation
3299 - Poultry, general/other;

Field Of Science
1090 - Immunology; 1101 - Virology;
Goals / Objectives
The economic success of the poultry industry in the USA hinges on extensive use of vaccines to control infections. Infectious Bronchitis (IB) is an economically important severe respiratory infectious disease of chickens caused by IB coronavirus (IBV). Current IBV Modified Live Vaccines (MLV) elicit a poor immune response and protection is usually short-lived and could require revaccinations. Vaccine development is further compounded by the presence of multiple serotypes or variants of IBV with little or no cross-protection seen among the serotypes. Reversion to virulence is another potential risk associated with widely used MLV for IBV. Preliminary data from our group indicated that a plasmid DNA (pQAC-N) encoding the N protein of IBV adjuvanted with QuilA Chitosan (QAC) nanoparticles, is sufficient to elicit robust humoral and cellular immune responses dominated by CD8+ and gd T-cells. In this project, our goal is to develop multivalent vaccine constructs that can protect chickens from single dose immunization.We have organized our project to address the following aims.Aim I: Characterize safety and immunogenicity of the DNA vaccine constructs (pQAC-NS).We will examine the safety and immunogenicity of pQAC-NS DNA constructs followingintranasal (IN) or in ovo (IO) immunization routes.Aim II: Evaluate the cross-protective efficacy of pQAC-NS. We will examine the crossprotective immunity of pQAC-NS constructs against divergent Ark and Cal strains in a standardheterologous vaccine/challenge model system in comparison to relevant MLV.
Project Methods
The optimized S and N sequence will be commercially synthesized with flanking restriction sites and C-terminal 6xHis tag to be cloned into an in-house vaccine expression vector (pCAG, originally from Addgene) to form the new pQAC-NS construct.Following the generation of the construct, groups of 1-day old (D1) white Leghorn chicks (N=15/group) will be immunized with commercially available Mass/Conn vaccine as a positive control. For the MLV, each chick will be immunized using the intranasal (IN) route with a dosage as suggested by the manufacturer. The pQAC-GFP (negative control) and mosaic pQAC-NS encoding mosaic N and S antigens for Mass41/Conn isolates (Mosaic I) will be given by the IN route at a dose of 100 ug/chick at day 1 for single dose or day 14 of age for prime/boost groups. For IO vaccination, 100 ug of pQAC-NS (Mass41/Conn) will be administered in 0.1ml by needle injection in the amniotic fluid at embryonic day 18 (E18). At 28 days of age, all bird groups will be challenged with 0.1 ml virulent field isolate of Mass41 strain (obtained from APHIS) via eye drop route using a titer of at least 106.5 EID50/bird. All chicks will be sacrificed at 8 days post challenge.For preliminary analysis of vaccine safety, chicks will be weighed upon hatch and examined daily for untoward health effects until challenge at 28 days of age. Also, the hatchability rate of eggs used for IN will be compared to that that received IO. Sera and tears from different time-points will be analyzed for humoral response against different representative IBV Mass41 and Conn serotypes. To dissect the type of immune cells activated following each immunization, isolated lung lymphocytes collected at 8 DPC, will be subjected to flow cytometry analysis using antibodies against CD4+, CD8α+ and TCRγδ+ lymphocytes. Viral shedding in tears and swabs will be quantitated by qRT-PCR standardized and validated in-house.Immunization/Challenge studies. A total of 6 vaccine groups will be examined in this part of the project for eachconstruct (mosaic I and II, total 12 groups) to accommodate challenge with 2 different IBV isolates. At day 1 of age, all chicks will be immunized using IN route (to mimic the standard coarse spray protocol used in chicken farms) with 100 ug/chick for the pQAC-NS while using the recommended dosage for MLV vaccine (matching the challenge isolate) as suggested by the manufacturer. A negative control group will be immunized with pQAC expressing GFP protein. At 28 DPV, all birds will be challenged with virulent field isolates of Mass41 or Conn IBV obtained from APHIS as recommended by the 9CFR guidelines. For Mosaic II, the same vaccination strategy will be repeated but challenge with a divergent Ark or Cal strains. Tracheal swabs will be collected at days 5 post challenge, collected in 3 ml of tryptose phosphate broth and antibiotics and stored at -80 oC. Each tracheal swab sample will be inoculated in the allantoic cavity (0.2 ml/egg) of 7 ECE at 9 to 11 days old. Only the embryos surviving the third day post inoculation will be utilized in further evaluation. Embryos will be considered positive for IBV when IBV lesions are displayed such as, stunting, curling or death in between 4-7 days post inoculation.We expect pQAC-NS vaccine to be at least 90% negative for virus recovery from tracheal swabs 5 days post challenge against all challenge strains tested, a criterion that is set forth by the 9CFR guidelines. In comparison, we expect competing MLV vaccine to elicit comparable protection against homologous DPI challenge.

Progress 07/01/21 to 02/28/23

Outputs
Target Audience:The direct audience for this project include, poultry health specialists, flock managers and owners as well as veterinarians. Our current commercialization approach is to collaborate with strategic partners to manufacture and market this novel IBV vaccine. Changes/Problems:The mosaic constructs did not provide adequate protection and so we had to design bicistronic vaccine constructs to increase the antigen payload. What opportunities for training and professional development has the project provided?The project director learnt many new techniques related to the chicken model system such as blood, tears, oral swab collection and subcutaneous and intranasal vaccine administration. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? Major goals of the project Goals: The economic success of the poultry industry in the USA hinges on extensive use of vaccines to control infections. Infectious Bronchitis (IB) is an economically important severe respiratory infectious disease of chickens caused by IB coronavirus (IBV). Current IBV Modified Live Vaccines (MLV) elicit a poor immune response and protection is usually short-lived and could require revaccinations. Vaccine development is further compounded by the presence of multiple serotypes or variants of IBV with little or no cross-protection seen among the serotypes. Reversion to virulence is another potential risk associated with widely used MLV for IBV. Preliminary data from our group indicated that a plasmid DNA (pQAC-N) encoding the N protein of IBV adjuvanted with QuilA Chitosan (QAC) nanoparticles, is sufficient to elicit robust humoral immune responses. In this project, our goal is to develop multivalent vaccine constructs that can protect chickens from IB. We have organized our project to address the following aims. Aim I: Characterize safety and immunogenicity of the mosaic DNA vaccine constructs (pQAC-NS). We will examine the safety and immunogenicity of pQAC-NS DNA constructs following intranasal (IN) or in ovo (IO) immunization routes. Aim II: Evaluate the cross-protective efficacy of pQAC-NS. We will examine the cross protective immunity of pQAC-NS constructs against divergent Ark and Cal strains in a standard heterologous vaccine/challenge model system in comparison to relevant MLV. What was accomplished under these goals? Objective I For Objective I of this project mosaic vaccine constructs were synthesized, and the safety and immunogenicity was tested in chickens. The mosaic S and N sequence for M41 and Conn were commercially synthesized with flanking restriction sites and C-terminal 6xHis tag to be cloned into an in-house vaccine expression vector (pCAG, originally from Addgene) to form the new mosaic pQAC-NS construct (mosaic S+ mosaic N). Following the generation of the construct, groups of 1-day old (D1cornish rocks broilers (N=15/group) were immunized with commercially available Mass41 vaccine as a positive control. For the MLV, each chick was immunized using the intranasal (IN) route with a dosage as suggested by the manufacturer. The mosaic pQAC-NS encoding mosaic N and S antigens for Mass41/Conn isolates was given by the SQ route at a dose of 30+30 ug/chick at day 1 and 20 ug + 20 ug at day 14 of age for prime/boost groups. At 21 days of age, all bird groups were challenged with virulent field isolate of Mass41 strain or Conn strain (obtained from APHIS) via eye drop route using a titer of at least 104 EID 50/bird. All chicks were sacrificed at 7 days post challenge. Sera and tears from different time-points were analyzed for humoral response. No untoward effect due to vaccination was observed in any of the vaccinated chickens indicating that pQAC-NS vaccines were safe. The prechallenge (21 DPV) serum IgY titers showed no statistically significant differences between the vaccinated and the sham vaccinated chickens. Objective II For Objective II, the protective efficacy of the vaccine was tested in chickens challenged with M41 and Conn strains. Chickens vaccinated in Objective I were challenged at 21 days of age. All bird groups were challenged with virulent field isolate of Mass41 strain or Conn strain (obtained from APHIS) via eye drop route using a titer of at least 104 EID 50/bird. All chicks were sacrificed at 7 days post challenge. Viral shedding in tears and swabs were quantitated by qRT-PCR standardized and validated in-house. The chickens that were sham vaccinated and challenged with M41 strain had significantly higher viral load compared to chickens vaccinated with mosaic vaccine and challenged with M41. No such differences were observed when the challenge was with the Conn strain. In addition, no differences in clinical severity scores were observed between any of the vaccine groups compared with the sham vaccine group. Based on the modest protective response of the mosaic vaccines we hypothesized that if the antigen expression by the plasmid DNA is improved we may observe better protection. To achieve this, we constructed a bicistronic vector that expressed both the S and N proteins of M41 from the same plasmid backbone using an IRES sequence (dubbed S-I-N). Chickens (N=9) were prime vaccinated at day 1 and boosted at D14 with the bicistronic S-I-N (60 ug prime and 200 ug boost at D14) construct or individual S (30 ug prime and 100 ug boost) and N (30 ug prime and 100 ug boost) constructs (dubbed SN) mixed together. At day 28 post vaccination chickens were challenged with M41 strain as mentioned above. The immune response as measured by IgY, and the clinical severity and viral loads were evaluated post challenge. The IgY humoral immune response data showed that chickens vaccinated with bicistronic S-I-N vaccine had similar IgY titers compared to SN vaccine. However, both the vaccine groups were significantly higher than the sham vaccinated chickens. No differences in clinical severity were observed between any of the groups. The viral titers in chickens vaccinated with the bicistronic S-I-N vaccine showed significantly lower viral loads compared to sham vaccinated as well as SN vaccinated chickens. This data indicated that increasing the antigen dose can significantly improve the vaccine performance of our IBV vaccines.

Publications


    Progress 07/01/22 to 02/28/23

    Outputs
    Target Audience: Nothing Reported Changes/Problems:The mosaic constructs did not provide adequate protection and so we had to design bicistronic vaccine constructs to increase the antigen payload. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

    Impacts
    What was accomplished under these goals? Objective II For Objective II, the protective efficacy of the vaccine was tested in chickens challenged with M41 and Conn strains. Chickens vaccinated in Objective I were challenged at 21 days of age. All bird groups were challenged with virulent field isolate of Mass41 strain or Conn strain (obtained from APHIS) via eye drop route using a titer of at least 104 EID 50/bird. All chicks were sacrificed at 7 days post challenge. Viral shedding in tears and swabs were quantitated by qRT-PCR standardized and validated in-house. The chickens that were sham vaccinated and challenged with M41 strain had significantly higher viral load compared to chickens vaccinated with mosaic vaccine and challenged with M41. No such differences were observed when the challenge was with the Conn strain. In addition, no differences in clinical severity scores were observed between any of the vaccine groups compared with the sham vaccine group. Based on the modest protective response of the mosaic vaccines we hypothesized that if the antigen expression by the plasmid DNA is improved we may observe better protection. To achieve this, we constructed a bicistronic vector that expressed both the S and N proteins of M41 from the same plasmid backbone using an IRES sequence (dubbed S-I-N). Chickens (N=9) were prime vaccinated at day 1 and boosted at D14 with the bicistronic S-I-N (60 ug prime and 200 ug boost at D14) construct or individual S (30 ug prime and 100 ug boost) and N (30 ug prime and 100 ug boost) constructs (dubbed SN) mixed together. At day 28 post vaccination chickens were challenged with M41 strain as mentioned above. The immune response as measured by IgY, and the clinical severity and viral loads were evaluated post challenge. The IgY humoral immune response data showed that chickens vaccinated with bicistronic S-I-N vaccine had similar IgY titers compared to SN vaccine. However, both the vaccine groups were significantly higher than the sham vaccinated chickens. No differences in clinical severity were observed between any of the groups. The viral titers in chickens vaccinated with the bicistronic S-I-N vaccine showed significantly lower viral loads compared to sham vaccinated as well as SN vaccinated chickens. This data indicated that increasing the antigen dose can significantly improve the vaccine performance of our IBV vaccines.

    Publications


      Progress 07/01/21 to 06/30/22

      Outputs
      Target Audience:The direct audience for this project include, poultry health specialists, flock managers and owners as well as veterinarians. Our current commercialization approach is to collaborate with strategic partners to manufacture and market this novel IBV vaccine. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project director learnt many new techniques related to the chicken model system such as blood, tears, oral swab collection and subcutaneous and intranasal vaccine administration. How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

      Impacts
      What was accomplished under these goals? The mosaic S and N sequence for M41 and Conn were commercially synthesized with flanking restriction sites and C-terminal 6xHis tag to be cloned into an in-house vaccine expression vector (pCAG, originally from Addgene) to form the new mosaic pQAC-NS construct (mosaic S+ mosaic N). Following the generation of the construct, groups of 1-day old (D1cornish rocks broilers (N=15/group) were immunized with commercially available Mass41 vaccine as a positive control. For the MLV, each chick was immunized using the intranasal (IN) route with a dosage as suggested by the manufacturer. The mosaic pQAC-NS encoding mosaic N and S antigens for Mass41/Conn isolates was given by the SQ route at a dose of 30+30 ug/chick at day 1 and 20 ug + 20 ug at day 14 of age for prime/boost groups. At 21 days of age, all bird groups were challenged with virulent field isolate of Mass41 strain or Conn strain (obtained from APHIS) via eye drop route using a titer of at least 104 EID 50/bird. All chicks were sacrificed at 7 days post challenge. Sera and tears from different time-points were analyzed for humoral response. No untoward effect due to vaccination was observed in any of the vaccinated chickens indicating that pQAC-NS vaccines were safe. The prechallenge (21 DPV) serum IgY titers showed no statistically significant differences between the vaccinated and the sham vaccinated chickens.

      Publications