Source: BERKELEY FERMENTATION SCIENCE INC. submitted to
ENGINEERING SACCHAROMYCES CEREVISIAE FOR INCREASED BIOTRANSFORMATION AND PRODUCTION OF TROPICAL FLAVORS FROM AGRICULTURAL PRODUCTS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1025791
Grant No.
2021-33530-34357
Cumulative Award Amt.
$100,000.00
Proposal No.
2021-00808
Multistate No.
(N/A)
Project Start Date
Jul 1, 2021
Project End Date
Feb 28, 2022
Grant Year
2021
Program Code
[8.5]- Food Science & Nutrition
Recipient Organization
BERKELEY FERMENTATION SCIENCE INC.
2451 PERALTA ST
OAKLAND,CA 946071703
Performing Department
(N/A)
Non Technical Summary
Tropical fruit flavors are highly desirable in the fermented beverage market. The popularity of these flavors is especially evident in the beer industry, where sales of beers made with tropical flavoring hops, primarily grown in the American Pacific Northwest and in Australia/New Zealand has skyrocketed in the last decade. While demand for these beers and the tropical flavoring-hops used to make them has increased in recent years, extreme weather events like droughts and high winds have simultaneously threatened, and in some cases damaged U.S. flavoring-hop harvests. As increasingly dry and adverse weather events are predicted to become more frequent due to climate change, U.S. hop harvests, hop farmers, and the production of in-demand beer styles will become increasingly threatened in coming years. While efforts are underway to support the $500M/yr American hop industry through the breeding of more resilient and drought tolerant hop cultivars, current drought-tolerant plants lack the pungent, fruity flavor profiles that brewers and beer drinkers demand.In this SBIR application, we propose to develop genetically engineered strains of brewers yeast that will produce strong, tropical fruit flavors during beer fermentation, using non-aromatic precursor molecules already existing in drought-tolerant hops as substrates. Specifically, we will engineer yeast for production of three volatile thiol molecules, 3MH (guava flavor), 3MHA (passionfruit), and 4MMP (black currant), each of which is a major contributor to the tropical flavor notes of currently popular hops varieties. As differing ratios of 3MH, 3MHA, and 4MMP molecules impart distinctive flavors in beer, we will construct a set of brewing yeast strains in which each strain produces distinct quantities of these three volatile thiols. This set of strains will provide brewers with an easily scalable toolkit that produces a diversity of tropical fruit flavored beers, using American-grown non-aromatic drought tolerant hops as substrates.This work will build upon our prior success engineering brewing yeast strains for enhanced 3MH biosynthesis during beer fermentation. In our proposed Phase I research, we will develop yeast strains that produce varying ratios of 3MH to 3MHA during fermentation, then test the consumer acceptance and commercial potential of this technology. In Phase II work, we will develop strains that additionally produce 4MMP during fermentation, then increase production of all three thiols so as to be comparable to the concentrations achieved through addition of popular flavoring hop varieties. The end result of Phase II work will be a set of strains that produce distinct, marketable, concentrations of 3MH, 3MHA, and 4MMP during beer fermentation. This technology will provide valuable tools that help the beer and hop industries meet consumer demand while insulating them from the threat of droughts and severely reduced hop harvests.
Animal Health Component
100%
Research Effort Categories
Basic
(N/A)
Applied
100%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
50122302020100%
Knowledge Area
501 - New and Improved Food Processing Technologies;

Subject Of Investigation
2230 - Hops;

Field Of Science
2020 - Engineering;
Keywords
Goals / Objectives
The overall goal of Phase I SBIR research is to improve beer quality by developing yeast strains that produce tropical-flavored thiols without off-flavors. The objectives of Phase I research that will allow us to reach this goal are to 1) identify an acyltransferase that converts 3MH to 3MHA without ethyl acetate production, and 2) vary acyltransferase expression to produce beer with distinct 3MH to 3MHA ratios. Once we achieve these objectives, we will evaluate successful achievement of improved beer quality by performing proof-of-principle brewing trials with chemical analytics and quanititative food science methods.
Project Methods
Aim 1: Identify an acyltransferase that converts 3MH to 3MHA without off-flavor production Hundreds of acyltransferase sequences from bacterial, fungal, and plant origins have been identified, but only a handful have been functionally characterized. In the cases where functional characterization was done, 3MH acetylating activity was rarely investigated, and as a result, no acyltransferases aside from ATF1 have been previously shown to produce 3MHA. In order to identify acyltransferases that produce 3MHA, but do not produce off-flavors, we will mine publically available sequences and choose a set of twenty candidate acyltransferases to screen for this desired functionality. In determining which twenty acyltransferase sequences to screen, priority will be given to those that have been functionally characterized and are known to 1) produce acetate esters, 2) produce limited ethyl acetate, and 3) show affinity for six-carbon alcohol substrates that are structurally similar to 3MH. For sequences that have not been functionally characterized, we will prioritize genes from tropical fruit and aromatic hops that display sequence similarity to characterized acetate ester-forming acyltransferases. These twenty acyltransferase genes will be synthesized and cloned into drug-selectable yeast centromeric plasmids with expression driven by the strong constitutive yeast promoter, pPGK1. Each of these plasmids will then be transformed into BY502. Transformed strains will be grown in brewing wort media supplemented with 100ng/L Cys-3MH in semi-anaerobic conditions that mimic the brewing environment. After five days of fermentation, culture supernatents will be harvested and concentrations of 3MH, 3MHA, ethyl acetate, and other esters will be determined by Solid-Phase Microextraction (SPME) GC/MS. The three acyltransferase genes that drive the highest 3MHA to 3MH ratio will be chosen for use in Aim 2. Aim 2: Vary acyltransferase expression to produce beer with distinct 3MH to 3MHA ratios We will first choose a set of ten yeast promoter sequences that display a range of expression strengths throughout the beer fermentation process. Each of these promoters will be paired with each of the top three acyltransferases identified in Aim 1, to generate 30 promoter/acyltransferase pairs. Each pair will be cloned into an "integration plasmid", with flanking sequences that mediate site-specific homologous recombination into the yeast genome. Each of the thirty integration plasmids will be linearized by restriction digest and transformed into BY502. Homozygous, stable integration of each promoter/acyltransferase pair at the target locus will be verified by diagnostic PCR. We will next brew beer with each of these thirty acyltransferase-expressing strains in our in- house pilot brewery. Beer fermentations will be supplemented with hops from drought resistant hop plants at day five, as this is typically when flavoring hops are added to beer fermentations. These hop additions will provide substrates for conversion to 3MH and potential subsequent acetylation to 3MHA. At the end of a ten-day fermentation, samples will be taken from each beer and analyzed by SPME GC/MS to quantity 3MH and 3MHA. Beers will also be kegged and carbonated, and an in-house sensory analysis will score each beer for flavor and aroma characteristics. From these combined analytical and sensory data, we will determine a group of five strains that produced beer with a range of 3MH to 3MHA ratios and that scored well during sensory analysis. This in-house sensory analysis will be sufficient to identify a set of five promising strains. To more rigorously assess the effects of our engineering efforts on beer chemistry, flavor, and stability, we will collaborate with the Shellhammer lab at Oregon State University (OSU). Professor Thomas Shellhammer is an internationally recognized expert in beer and hops chemistry, and he studies the contribution of hops to beer flavor, and the sustainability of beer and hops production. His lab has extensive capabilities for producing beer on a state-of-the-art, commercially-comparable 2 hL pilot brewery coupled with instrumental resources for characterizing raw materials and finished beer quality. His lab has worked with a diverse set of industrial partners including large global brewing companies, small, craft breweries, and industry leading companies in the areas of malt, hops, yeast, enzymes and brewery processing equipment. His facilities and expertise are ideally suited to perform more comprehensive brewery trials with our engineered strains. BY will send the Shellhammer lab the five yeast strains chosen on the basis of their distinct 3MH to 3MHA production profiles. The Shellhammer lab will brew 2 hL of beer with each of these strains using its pilot brewery, and will experiment with adding varying quantities and cultivars of drought-tolerant hops during the fermentation. Finished beer will be analyzed for differences in basic beer chemistry (fermentability and ABV) plus specific hop and fermentation components using HPLC and GC techniques. These same beers will be assessed using human sensory descriptive analysis techniques and an in-house trained panel. These two approaches will allow us to determine the magnitude of volatile thiol release and how it modulates the sensory qualities of the resultant beer. Work performed by the Shellhammer lab will allow us to confidently determine whether our engineering efforts succeeded in generating strains that produce flavor-distinct quantities of 3MH and 3MHA without negatively affecting other beer quality parameters. If successful, this work will represent a significant step forward in our ability to modulate the biotransformation process, and will clearly motivate further work in this area.

Progress 07/01/21 to 02/28/22

Outputs
Target Audience:The target audiences for this project are 1) hop farmers, and 2) brewers. The technology developed during this project will allow brewers to extract desirable flavorful compounds from drought tolerant hops during the brewing process. This technology will increase the value of drought tolerant hops for brewers, and in so doing will allow farmers to transition from planting drought sensitive hop cultivars, to planting more drought tolerant cultivars. As such, this technology will positively impact hop farmers, by allowing them to plant crops that are more robust to the effects of climate change. Our technology will also benefit brewers, by allowing them to create desirable beer flavors using raw ingredients that are more robust to supply chain disruptions caused by the effects of climate change, or other factors. Changes/Problems:No changes or problems in our research were necessary/encountered. What opportunities for training and professional development has the project provided?This work provided training opportunities for several junior Research Associates at Berkeley Yeast. Under the mentorship of skilled Scientists, the Research Associates learned cutting edge genetic engineering methods, as well as methods for analytical quantification of volatile thiols via High Pressure Liquid Chromatography-Mass Spectrometry. How have the results been disseminated to communities of interest?Results from this research have/will be disseminated to communities of interest via two channels. The first is through a publication in the journal Fermentation. In a manuscript co-authored with the lab of Dr. Tom Shellhammer, we describe all of the work conducted in this Phase I research effort. This manuscript has been submitted and is currently under review. The second channel through which this work has/will be communicated is via professional brewing conferences. We have given talks and presentations at multiple brewing conferences (most recently the 2022 Craft Brewers Conference in Minneapolis), during which we reference the results from this work and speak to its implications for the brewing industry. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? We accomplished all of the goals set out at the start of the project. First, we performed a screen of 16 different acyltransferase genes to identify one that converted 3MH (guava flavor) to 3MHA (passionfruit) without substantial production of the off-flavor ethyl-acetate. From this screen we identified the acyltransferase gene CATec3 as a promising candidate. This screen also identified a second acyltransferase gene, MpAAT1, that produced substantial quantities of another desirable flavor molecule, ethyl hexanoate (pineapple flavor). We next built several genetically modified brewers yeast strains that produced both 3MH, as well as expressed either the CATec3 or MpAAT1 genes. These strains were shipped to the lab of Dr. Tom Shellhammer for brewing trials and sensory analysis. In brewing trials with drought tolerant hops, the genetically modified strains performed similarly to the parental non-GM strains across all fermentation performance parameters (e.g. sugar consumption, finishing gravity, pH, alcohol content). Sensory analysis of the beers revealed that beer made with our GM strains had strong tropical fruit flavor notes,whereas the non-GM parental strain did not. Chemical analysis of the beer revealed that the GM strains had produced substantially increased concentrations of 3MH, 3MHA, and ethyl-hexanoate. The relative ratios and concentrations of these flavor molecules differed among the different GM strains, indicating that by varying acyltransferase genes and gene expression levels, we could create brewing strains that produce diverse tropical flavor bouquets during fermentation. One of the strains tested in this work was subsequently subjected to additional safety testing (genomic stability analysis and untargeted metabolomics), and was then released for sale to commercial breweries. Sales of this strain are rapidly growing among the craft brewing industry. In summary, this work clearly indicates the potential of genetic modification to create new brewing yeast strains that enhance the flavors extracted from brewing ingredients (e.g. drought tolerant hops), and that are commercially viable within the brewing industry.

Publications

  • Type: Journal Articles Status: Submitted Year Published: 2022 Citation: Richard W. Molitor, Jeremy I. Roop, Charles M. Denby, Charles J. Depew, Daniel S. Liu, Sara E. Stadulis, Thomas H. Shellhammer. The Sensorial and Chemical Changes in Beer Brewed with Yeast Genetically Modified to Release Polyfunctional Thiols from Malt and Hops. Submitted to Fermentation; 2022.