Progress 11/22/19 to 09/30/20
Outputs Target Audience:The target audience of these projects are swine veterinarians and virologists, pork producers, international and domestic animal health companies, government agencies (USDA APHIS and ARS), and swine health organizations, individuals invested in advancing swine and livestock production disease research, industry and academic collaborators, as well as graduate and undergraduate students trained through these projects with experimental learning opportunities. Changes/Problems:We had to terminate an animal vaccine study on HP-PRRSV in the BSL-3 facility in mid-March 2020 because of limited university operation in response to COVID-19. We will repeat the study in 2021. What opportunities for training and professional development has the project provided?Dr. Shi has provided the training opportunity for two postdoctoral fellows that are working on ASF/CSF related research at PIADC - USDA ARS Research Unit on Plum Island. Dr. Niederwerder has provided graduate student mentoring as major professor or co-major professor to 1 MS and 3 PhD students during the reporting time period. How have the results been disseminated to communities of interest?For the purpose of enhancing public understanding and increasing interest in learning and careers in science, technology, and the humanities, we have presented our research results to various members of communities thorough in person and online meetings with groups on or off campus, interviews with radio stations and other news outlets, as well as presenting at international and national scientific and industry conferences. Specifically, we have shared our results and knowledge with the following communities: The Hutchinson News K-State's daily "Agriculture Today" radio program and podcast KSNT TV International Veterinary Student Association (IVSA), KSU USDA APHIS, Topeka, KS ASAS-CSAS-WSASAS Virtual Annual Meeting Kansas State University Global Food Systems Initiative Microbiome Virtual Workshop, 51st Annual Meeting of the American Association of Swine Veterinarians Midwest Animal Science Meeting Michigan Professional Pork Producers Symposium Annual Finnish Veterinary Congress, Helsinki, Finland Conference for Research Workers in Animal Disease, Chicago North American PRRS Symposium, Chicago Feed info News Service Feed Additives Americas South Dakota State University Swine Day, Brookings USAHA-AAVLD Annual Meeting, Providence What do you plan to do during the next reporting period to accomplish the goals?We will: Develop validate novel ASF vaccines and companion DIVA diagnostic assays. Develop and validate the cELISA that can differentiate pigs vaccinated with the C-strain vaccine from pigs infected with wildtype CSF viruses. Evaluate novel vaccines and therapeutic compounds against PRRSV. Investigate physical and chemical mitigation strategies for reducing the risk of foreign animal disease entry and spread through feed. Investigate the use of microbiome modulation in preventing respiratory disease in weaned pigs.
Impacts What was accomplished under these goals?
Objective 1. CONTROL OF PRRSV PRRS immunology and vaccinology We have conducted one PRRS vaccine animal challenge study to evaluate the efficacy of an experimental vaccine, the study was terminated prematurely due to COVID-19 related university operation shutdown. We have done one in vitro anti-viral compound screening study and identified a small molecule compound that can block the replication of PRRSV in MARC-145 cells. We also evaluated the therapeutic efficacy of an anti-inflammatory compound in pigs challenged with high path PRRS virus. This study is still ongoing. Results will be available in 2021. 1.2. PRRS epidemiology: 1.3. PRRS Surveillance and Diagnostics: We have identified beneficial gut microorganisms associated with improved health and growth outcomes in pigs co-infected with PRRSV and PCV2, such as increased weight gain, reduced virus replication, less antimicrobial treatment, and decreased pathology. Fecal microbiota transplantation has been utilized as a preventative medicine tool to improve subsequent outcome during PRRS-associated polymicrobial respiratory disease. Further, we have identified microbiome characteristics associated with improved PRRS vaccine response. Novel PRRS vaccine is being evaluated as new tools for PRRS prevention and control in regions with highly pathogenic PRRSV. The anti-PRRSV and anti-inflammatory compounds may be used as experimental tools in studies employing PRRSV infection as a model for human COVID-19. The swine microbiome provides an opportunity to improve the growth and health outcomes of pigs with respiratory and other viral diseases. Porcine reproductive and respiratory syndrome virus (PRRSV) is considered the most costly disease of swine production in the U.S. Our work is aimed at identifying beneficial organisms from the gut microbiomes of pigs with improved health outcomes after viral disease challenge. Microbiome therapeutics may be used as preventative medicine tools to reduce the effects of viral infections and decrease the need for antimicrobials in swine. Objective 2 Developing effective and efficient approaches for detection, prevention and control of pressing viral diseases of swine of recent emergence 2.1 ASFV: Using ASF Georgia 2007 and Vietnam 2019, we have created three gene-deleted mutants as experimental vaccines against ASF. We will test the efficacy and safety of these vaccines in 2021. In addition, we are developing monoclonal antibodies against various ASFV proteins with the intention to develop DIVA assays for the ASF vaccine developed by USDA ARS and our own lab. We have received some serum samples from pigs infected with ASFV in Vietnam.Immunological analysis of these samples will be conducted in 2021. We have characterized ASFV decay during transoceanic shipment conditions in 9 feed ingredients commonly imported into the U.S. From the ASFV decay curves, we have calculated half-life estimates with SE and CI for recommended feed ingredient storage time. We have investigated chemical mitigation strategies, such as the use of formaldehyde and medium chain fatty acid based feed additives, for inactivating ASFV in feed ingredients. Further, we defined the dose-dependent ASFV inactivation curves for each feed additive in cell culture. 2.2: Swine Influenza Virus: 2.3 Porcine Circovirus: 2.4 Swine Pestiviruses: We have developed a competitive ELISA that can differentiate pigs vaccinated with the C-strain CSF vaccine from pigs infected with wildtype CSF viruses or other swine viruses. Using a transoceanic shipment model, we identified what feed ingredients support CSFV stability during environmental import conditions from Asia. 2.5: Senecavirus: 2.7: Viruses with potential interest to Xeno-transplantation science: Impacts: DIVA assays are CSF and ASF vaccines so that they can be used on swine farm to differentiate vaccinated pigs from animal infected with the wildtype CSFV or ASFV. African swine fever virus (ASFV) is currently the most significant threat to worldwide pork production. Defining the risk and mitigation of ASFV and other emerging viral diseases of swine in feed provides the opportunity to implement interventions for preventing introduction and spread of foreign viral diseases into the U.S. herd. We are identifying high-risk ingredients commonly imported in the U.S. that support virus stability, and investigating physical and chemical mitigation strategies, such as feed additives with antimicrobial activity, to inactivate viruses in feed.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
15. Gebhardt, J.T., K.A. Thomson, J.C. Woodworth, S.S. Dritz, M.D. Tokach, J.M. DeRouchey, R.D. Goodband, C.K. Jones, R.A. Cochrane, M.C. Niederwerder, S. Fernando, W. Abbas, T.E. Burkey. 2020. Effect of dietary medium-chain fatty acids on nursery pig growth performance, fecal microbial composition, and mitigation properties against porcine epidemic diarrhea virus following storage. Journal of Animal Science. 98(1):skz358. doi:10.1093/jas/skz358.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
16. Sanglard, L.P., S. Schmitz-Esser, K.A. Gray, D.C.L. Linhares, C.J. Yeoman, J.C.M. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2020. Investigating the relationship between vaginal microbiota and host-genetics and their impact on immune response and farrowing traits in commercial gilts. Journal of Animal Breeding and Genetics. 137(1):84-102. doi:10.1111/jbg.12456.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2020
Citation:
17. Wang, Y., L. Noll, N. Lu, E. Porter, C. Stoy, W. Zheng, X. Liu, L. Peddireddi, M.C. Niederwerder, J. Bai. 2020. Genetic diversity and prevalence of porcine circovirus type 3 (PCV3) and type 2 (PCV2) in the Midwest of the USA during 2016-2018. Transboundary and Emerging Diseases. 67(3): 1284-1294. doi:10.1111/tbed.13467.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
18. Stoian, A.M.M., J. Zimmerman, J. Ji, T.J. Hefley, S. Dee, D.G. Diel, R.R.R. Rowland, M.C. Niederwerder. 2019. Half-Life of African Swine Fever Virus in Shipped Feed. Emerging Infectious Diseases. 25(12): 2261-2263. doi: 10.3201/eid2512.191002.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
6. Niederwerder, M.C. 2020. Survival and transmission of foreign animal diseases in feed. Invited oral presentation and proceedings, 51st Annual Meeting of the American Association of Swine Veterinarians, March 7-10, 2020, Atlanta, GA, pg 366.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
7. Sanglard, L.P., R.L. Fernando, K.A. Gray, D.C.L. Linhares, J.C.M. Dekkers, M.C. Niederwerder, and N.V.L. Ser�o. 2020. Genomic basis of antibody response to porcine reproductive and respiratory syndrome virus vaccination. Oral presentation, Midwest Animal Science Meeting, Omaha, NE; March 3, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
8. Niederwerder, M.C. 2020. Risk of Foreign Animal Disease in Feed. Invited oral presentation, Michigan Professional Pork Producers Symposium, East Lansing, MI; February 20, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
9. Niederwerder, M.C. 2020. Gut Microbiome and Respiratory Health. Invited oral presentation, Michigan Professional Pork Producers Symposium, East Lansing, MI; February 20, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
10. Niederwerder, M.C. 2019. Role of the gut microbiome in porcine respiratory disease complex. Invited oral presentation, Annual Finnish Veterinary Congress, Helsinki, Finland; December 12, 2019.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
11. Niederwerder, M.C. 2019. Risk of feed in the introduction and transmission of viral diseases. Invited oral presentation, Annual Finnish Veterinary Congress, Helsinki, Finland; December 12, 2019.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
1. Shi, J. Control and impacts of African swine fever. International Veterinary Student Association (IVSA), College of Veterinary Medicine, KSU, Manhattan, KS. Feb. 24, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
2. Shi, J. Control and impacts of African swine fever. USDA APHIS, Topeka, KS. Feb. 11, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
3. Sanglard, L.P., R.L. Fernando, K.A. Gray, D.C.L. Linhares, J.C.M. Dekkers, M.C. Niederwerder and N.V.L. Ser�o. 2020. Genomic relationship between antibody response to porcine reproductive and respiratory syndrome virus vaccination and reproductive performance in commercial sows. Oral presentation, ASAS-CSAS-WSASAS Virtual Annual Meeting; July 22, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
4. Niederwerder, M.C. 2020. Role of Gut Microbes in Swine Respiratory Disease. Invited oral presentation, Kansas State University Global Food Systems Initiative Microbiome Virtual Workshop, Manhattan, KS; April 30, 2020.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2020
Citation:
5. Dee, S., M. Niederwerder, G. Patterson, D. Diel, E. Nelson. 2020. Update on feed mitigation research. Invited oral presentation and proceedings, 51st Annual Meeting of the American Association of Swine Veterinarians, March 7-10, 2020, Atlanta, GA, pg 367-368.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
12. Sanglard, L.P., S. Schmitz-Esser, K.A. Gray, D.C.L. Linhares, C.J. Yeoman, J.C.M. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2019. Association between vaginal microbiome and antibody response to PRRS vaccination in commercial gilts. Oral presentation and proceedings, Conference for Research Workers in Animal Disease, Chicago, IL; pg 32.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
13. Sanglard, L.P., S. Schmitz-Esser, K.A. Gray, D.C.L. Linhares, C.J. Yeoman, J.C.M. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2019. Vaginal microbiome of PRRS-vaccinated gilts differs between animals with high and low farrowing performance. Poster presentation and proceedings, North American PRRS Symposium, Chicago, IL; pg 30.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
14. Sanglard, L.P., S. Schmitz-Esser, K.A. Gray, D.C.L. Linhares, C.J. Yeoman, J.C. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2019. Association between vaginal microbiome and antibody response to PRRS vaccination in commercial gilts. Poster presentation and proceedings, North American PRRS Symposium, Chicago, IL; pg 29.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
15. Niederwerder, M.C. 2019. The Relationship between Animal Health and Nutrition. Invited oral presentation, Feed info News Service Feed Additives Americas, Miami, FL; November 15, 2019.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
16. Niederwerder, M.C. 2019. Risk of African swine fever and other foreign animal diseases through feed. Invited Keynote speaker, South Dakota State University Swine Day, Brookings, SD; November 5, 2019.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
17. Wang, Y., L. Noll, N. Lu, E.G. Porter, C.P.A. Stoy, W. Zheng, X. Liu, L. Peddireddi, M. Niederwerder, T.G. Nagaraja, J. Bai. 2019. Genotyping and Prevalence of Porcine Circovirus Type 3 (PCV3) and Type 2 (PCV2) in the Midwest of the USA during 2016-2018. Oral presentation and proceedings, USAHA-AAVLD Annual Meeting, Providence, RI; October 27, 2019.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
18. Dee, S., M. Niederwerder, G. Patterson, D. Diel. 2019. Risk of ASFV and PEDV transmission in feed ingredients. Oral presentation and proceedings, USAHA Foreign and Emerging Diseases committee meeting, USAHA-AAVLD Annual Meeting, Providence, RI.
- Type:
Journal Articles
Status:
Accepted
Year Published:
2020
Citation:
1. Shi, J., L. Wang, and D.S. McVey. 2020. Of pigs and men: the best laid plans for prevention and control of swine fevers. Animal Frontiers (Invited review and accepted for publication).
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
2. Wang, L., R. Madera, Y. Li, D.S. McVey, B.S. Drolet, and J. Shi. 2020. Recent advances in diagnosis of classical swine fever and future perspectives. Pathogens. 9(8), 658; https://doi.org/10.3390/pathogens9080658
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
3. Wang, L., S. Mi, R. Madera, L. Ganges, M.V. Borca, J. Ren; C. Cunningham, A.G. Cino-Ozuna, H. Li, C. Tu, W. Gong; and J. Shi. 2020. A neutralizing monoclonal antibody-based competitive ELISA for classical swine fever C-strain postvaccination monitoring. BMC Veterinary Research. Open Access, Published online Jan. 14, 2020. https://link.springer.com/article/10.1186/s12917-020-2237-6
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
4. Borca, M.V., V. ODonnell, L.G. Holinka, G.R. Risatti, E. Ramirez-Medina, E.A. Vuono, J. Shi, S. Pruitt, A. Rai, E. Silva, L. Velazquez Salinas, and D.P. Gladue. 2020. Deletion of CD2-like gene from the genome of African swine fever virus strain Georgia does not attenuate virulence in swine. Scientific Reports. 10:494. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6965178/
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
5. Evans, T.S., Z. Shi, M. Boots, W. Liu, K. Olival, X. Xiao, S. Vandewoude, H. Brown, J. Chen, D. Civitello, L. Escobar, Y. Grohn, H. Li, K. Lips, Q. Liu, J. Lu, B. Martinez-Lopez, J. Shi, X. Shi, B. Xu, L. Yuan, G. Zhu, and W. Getz. 2020. Synergistic China-US Ecological Research is Essential for Global EID Preparedness. EcoHealth, Open Access, Published online Feb. 3, 2020. https://link.springer.com/article/10.1007/s10393-020-01471-2
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
6. Zhang, H., Y. Wang, E. Porter, N. Lu, Y. Li, F. Yuan, M. Lohman, L. Noll, W. Zheng, C. Stoy, Y. Lang, V. Huber, W. Ma, L. Peddireddi, Y. Fang, J. Shi, G. Anderson, X. Liu, J. Bai. 2019. Development of a multiplex real-time RT-PCR assay for simultaneous detection and differentiation of influenza A, B, C, and D viruses. Diagnostic Microbiology and Infectious Disease. 95(1):59-66.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
7. Patterson, G., M.C. Niederwerder, G. Spronk, S.A. Dee. 2020. Quantification of soy-based feed ingredient entry from ASFV-positive countries to the United States by ocean freight shipping and associated seaports. Transboundary and Emerging Diseases. doi:10.1111/tbed.13881.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
8. Sanglard, L.P., R.L. Fernando, K.A. Gray, D.C.L. Linhares, J.C.M. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2020. Genetic analysis of antibody response to Porcine Reproductive and Respiratory Syndrome vaccination as an indicator trait for reproductive performance in commercial sows. Frontiers in Genetics. 11:1011. doi:10.3389/fgene.2020.01011.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
9. Dee, S.A., M.C. Niederwerder, R. Edler, D. Hanson, A. Singrey, R. Cochrane, G. Spronk, E. Nelson. 2020. An evaluation of additives for mitigating the risk of virus-contaminated feed using an ice-block challenge model. Transboundary and Emerging Diseases. doi:10.1111/tbed.13749.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
10. Niederwerder, M.C., S. Dee, D.G. Diel, A.M.M. Stoian, L.A. Constance, M. Olcha, V. Petrovan, G. Patterson, A.G. Cino-Ozuna, R.R.R. Rowland. 2020. Mitigating the risk of African swine fever virus in feed with antiviral chemical additives. Transboundary and Emerging Diseases. doi:10.1111/tbed.13699.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
11. Dee, S., A. Shah, R. Cochrane, T. Clement, A. Singrey, R. Edler, G. Spronk, M. Niederwerder, E. Nelson. 2020. Use of a demonstration project to evaluate viral survival in feed: Proof of concept. Transboundary and Emerging Diseases. doi:10.1111/tbed.13682.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
12. Dee, S.A., M.C. Niederwerder, G. Patterson, R. Cochrane, C. Jones, D. Diel, E. Brockhoff, E. Nelson, G. Spronk, P. Sundberg. 2020. The risk of viral transmission in feed: What do we know, what do we do? Transboundary and Emerging Diseases. doi:10.1111/tbed.13606.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
13. Sanglard, L.P., S. Schmitz-Esser, K.A. Gray, D.C.L. Linhares, C.J. Yeoman, J.C.M. Dekkers, M.C. Niederwerder, N.V.L. Ser�o. 2020. Vaginal microbiota diverges in sows with low and high reproductive performance after porcine reproductive and respiratory syndrome vaccination. Scientific Reports. 10(1):3046. doi:10.1038/s41598-020-59955-8.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
14. Stoian, A.M.M., V. Petrovan, L.A. Constance, M. Olcha, S. Dee, D.G. Diel, M.A. Sheahan, R.R.R. Rowland, G. Patterson, M.C. Niederwerder. 2020. Stability of classical swine fever virus and pseudorabies virus in animal feed ingredients exposed to transpacific shipping conditions. Transboundary and Emerging Diseases. 67(4):1623-1632. doi:10.1111/tbed.13498.
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