Progress 11/22/19 to 09/30/20
Outputs Target Audience:Target audiences include veterinary researchers and diagnosticians, veterinary practitioners, pork producers, and veterinary biologics and diagnostics companies. Tools and knowledge generated from this work provide insight for other researchers as well as direct benefits for the livestock industry through improved strategies for the diagnosis and control of infectious diseases. Changes/Problems:The COVID-19 pandemic did require some changes in our original research priorities over the past 9 months. Based on the focus of our original objectives for this project and our prior experience working with a variety of coronaviruses, we were well-positioned to conduct needed reagent and assay development for SARS-CoV-2. We anticipate that we will still be able to remain on schedule for all of our original stated objectives. What opportunities for training and professional development has the project provided?Six undergraduate students and 3 graduate students received extensive training from this project. Numerous additional graduate students, primarily assigned to collaborating laboratories, received specialized training in hybridoma technology and diagnostic assay development and validation. Three Research Associates at South Dakota State University, Dr. Steve Lawson, Aaron Singrey and Julie Nelson, contributed substantially to the project, benefitting from professional development opportunities. This work has resulted in expanded collaborations with private industry and other academic institutions. Additional funding for this work was provided by the National Pork Board, the Swine Health Information Center, USDA-NIFA, USDA-ARS, the South Dakota Governor's Office of Economic Development, the South Dakota Agricultural Experiment Station and the Animal Disease Research and Diagnostic Laboratory. Laura Munger, BS student. May, 2018 - present. Laura has been working in our laboratory on multiple projects including the development and validation of multiple serological assays.She has learned a wide range of molecular biology skills including DNA/RNA extraction/purification and protein purification. She worked extensively in our hybridoma laboratory to develop monoclonal antibody reagents. Post-graduation, Laura plans to further her education to receive her DVM, along with a master's degree. Molly Kroeger, BS student. January 2018 - May 2020. Molly is interested in a professional research career and recently started a PhD program. Her research work on this project focused on the development of diagnostic reagents and the validation of serological assays including ELISA, FMIA & IFA platforms for Senecavirus A. Katelyn Bettin, BS student. May 2020 - present. Katelyn has been working in our lab and has been involved in all aspects of hybridoma production, diagnostic test development and general maintenance of the laboratory. She is a junior Animal Science major. Kayla Egenes, BS student. August 2020 - present. Kayla is a junior Honors College student and Human Biology major and is interested in pursuing a medical degree. Her research project has focused on the development of diagnostic reagents and assays and she works extensively in the hybridoma laboratory. Pratik Katwal, PhD student with Dr. Wang, Fall 2017-present. Pratik is working on the role of cellular restriction factors in PRRSV replication in vitro. He has mastered flow cytometry, confocal microscopy, qRT-PCR and other techniques. He has submitted two abstracts for oral presentations to be held virtually. Shamiq Aftab, PhD student with Dr. Wang, Spring 2020-present. Shamiq is working on the role of cellular GTPases such as Rab11 and Rab8 in PRRSV replication. He will be also working on Senecavirus A pathogenesis. He has mastered cell culture, transfection, confocal microscopy and other molecular techniques. Sienna Josephine Mahan-Deitte, BS student, Fall 2019-spring 2020. Sienna worked with Pratik to examine the role of cellular restriction factors on PRRSV replication. She has mastered mammalian cell culture, virus titration assay, and other routine laboratory techniques. Kaylee Lynne Athey, BS student, Fall 2020-present. Kaylee is working with Shamiq on the role of cellular GTPase on PRRSV replication. She is learning routine laboratory techniques as well as cell culture, virus titration etc. Shaurav Bhattarai, PhD student with Ben Hause. June, 2020-present. Shaurav's dissertation is focused on emerging infectious viruses of cattle and swine and development of countermeasures. Specific to NC229, he is working on a universal influenza A virus-swine vaccine project. Pig vaccination and challenge experiments will be conducted in January, 2021. How have the results been disseminated to communities of interest?Results of this work have been broadly disseminated through publications in appropriate scientific journals and presentations at scientific and stakeholder meetings. Technologies developed during the course of this project have been implemented in various veterinary diagnostic laboratories to serve the livestock industry. Additional products developed here are being considered for licensing and commercial distribution. What do you plan to do during the next reporting period to accomplish the goals?Goal 1: Control of PRRSV. 1.1. PRRSV immunology/vaccinology: We will continue to validate observations related to virus restriction factors and investigate the mechanistic basis of virus restriction mediated by both cellular and innate factors during the next reporting period. One USDA NIFA grant proposal was submitted and it is current under review. We will also provide specialized diagnostic assay support for studies related to PRRSV immunology and vaccinology. 1.2. PRRSV epidemiology: We will continue to contribute PRRSV sequence data from field cases to collaborative efforts using bioinformatics tools to summarize and report routine pathogen detection to inform the U.S. swine industry on key macro-epidemiological aspects of agent detection. 1.3. PRRSV Surveillance and Diagnostics: We will continue to provide reagents, including monoclonal antibodies, as well as diagnostic assay support to collaborating stations, other universities and industry for research and diagnostic applications. Goal 2: Developing effective and efficient approaches for detection, prevention and control of pressing viral diseases of swine of recent emergence. 2.2. Swine Influenza Virus: The SDSU Station will continue to contribute swine influenza virus diagnostic and sequence data from field cases to collaborative efforts using bioinformatics tools to summarize and report routine pathogen detection to inform the U.S. swine industry on key macro-epidemiological aspects of agent detection. 2.5. Senecavirus A: We will continue efforts to develop improved diagnostic methods for Senecavirus A. 2.8. Foreign animal disease (FAD) import risk through feed ingredients: During the next year, we will continue to contribute to efforts led by Dr. Scott Dee, Pipestone Applied Research, to evaluate mitigation strategies to reduce the risk of pathogen transmission through feed using SVA, PRRSV and PEDV as model pathogens.
Impacts What was accomplished under these goals?
Goal 1: Control of PRRSV (20% Accomplished). 1.1. PRRSV immunology/vaccinology: During the current reporting period we examined the role of two virus restriction factors, namely IFITM3 and ZMPSTE24, in PRRSV replication. We have shown that over-expression of IFITM3 reduces PRRSV replication. An average of 5.4-fold decrease in virus titers was observed in the supernatants of IFITM3 transfected cells compared to vector controls. To examine the mechanisms by which IFITM3 reduced PRRSV replication, we first focused on virus entry. We observed the colocalization of PRRSV with early endosome marker (EEA1) at 3 h after virus infection, but only limited colocalization between PRRSV and late endosome/lysosome marker (LAMP1) at 3 h after virus infection. No or limited colocalization of PRRSV with EEA1 and LAMP1 was observed at 1 h and 6 h after infection. Amphotericin B treatment only partially restore the replication of PRRSV in cells over-expressing IFITM3. Over-expression of IFITM3 does not significantly impact virus entry (p > 0.05). Furthermore, we observed that MARC-145 cells constitutively express a relatively low level of IFITM3. Treatment of MARC-145 cells with Interferon alpha and gamma upregulates the expression of Mx1 (9.7 and 28.5 fold respectively) and IFITM3 (2.3 and 2.7 fold respectively), which is positively correlated with reduced virus replication. The exact mechanisms by which IFITM3 restricted PRRSV replication remain to be determined in future studies. Similarly, we found that over-expression of ZMPSTE24 in MARC-145 cells reduces PRRSV replication. An average of 76-fold decrease in PRRSV TCID50 titer was observed in the supernatants of ZMPSTE24 transfected cells compared to the vector controls. Over-expression of ZMPSTE24 does not affect virus entry into MARC-145 cells. Interestingly, PRRSV nucleocapsid distribution pattern in ZMPSTE24 positive cells is different from those in ZMPSTE24 negative cells. Little or no colocalization of exogenous ZMPSTE24 with PRRSV was observed at 24 h after infection. However, silencing of endogenous ZMPSTE24 slightly affects PRRSV replication. Cell viability was not affected by over-expression of either IFITM3 or ZMPSTE24. We will continue to examine the molecular mechanisms by which these two virus restriction factors limit PRRSV replication in MARC-145 cells. Additionally, in support of research being conducted at USDA-ARS-NADC in Ames, IA, mouse monoclonal and rabbit polyclonal antibody reagents against the PRRSV MLV?23-S tag peptide sequence were developed for DIVA (differentiating infected from vaccinated animals) vaccine diagnostic differentiation. 1.2. PRRSV epidemiology: The SDSU Station contributed PRRSV sequence data from field cases to collaborative efforts using bioinformatics tools to summarize and report routine pathogen detection to inform the U.S. swine industry on key macro-epidemiological aspects of agent detection. During this reporting period, over 900 PRRSV sequences were contributed by the SDSU Station. 1.3. PRRSV Surveillance and Diagnostics: The SDSU Station continued to provide numerous reagents, including monoclonal antibodies, as well as diagnostic assay support to collaborating stations, other universities and industry for research and diagnostic applications. Goal 2: Developing effective and efficient approaches for detection, prevention and control of pressing viral diseases of swine of recent emergence (20% Accomplished). 2.2. Swine Influenza Virus: The SDSU Station contributed swine influenza virus diagnostic and sequence data from field cases to collaborative efforts using bioinformatics tools to summarize and report routine pathogen detection to inform the U.S. swine industry on key macro-epidemiological aspects of agent detection. Additional monoclonal antibodies against selected epitopes of influenza D virus were developed and are being fully characterized for application in collaborative research projects. 2.5. Senecavirus A: We continued to develop additional reagents for detection of Senecavirus A antigen and antibody. Serum virus neutralization assays (SVN) and immunohistochemistry (IHC) methods using these antibodies are now readily available to veterinary clients at the South Dakota ADRDL and provide important tools to monitor and differentiate incidences of vesicular disease outbreaks. 2.8. Foreign animal disease (FAD) import risk through feed ingredients: The goal of this work is to evaluate survival of important viral pathogens of livestock in animal feed ingredients imported into the U.S. under simulated transboundary conditions. Previously, virus survival was evaluated using Trans-Pacific or Trans-Atlantic transboundary models with representative feed ingredients, transport times and environmental conditions. Results demonstrated survival of certain viruses in specific feed ingredients ("high-risk combinations") under conditions simulating transport between continents and provided further evidence that contaminated feed ingredients may represent a risk for transport of pathogens at domestic and global levels. Continuing collaborative efforts are now focused on mitigation strategies using SVA, PRRSV and PEDV as model pathogens. A variety of feed additives, including a dried lactic acid product, and extended feed storage times were found to help reduce the risk of pathogen transmission through feed. Impact statements: A recently developed monoclonal antibody-based blocking ELISA to detect antibody responses to Senecavirus A (SVA) was validated and licensed for commercialization. Monoclonal antibodies against Senecavirus A were further characterized and applied to serum virus neutralization assays (SVN) and immunohistochemistry (IHC) methods, providing important tools to monitor and differentiate incidences of vesicular disease outbreaks. Large panels of monoclonal antibodies against the nucleocapsid and spike proteins of SARS-CoV-2 were developed. These antibodies will be of value in a wide range of research and diagnostic applications related to COVID-19. Further study to evaluate survival of viral pathogens in animal feed and feed ingredients imported into the U.S. under simulated transboundary conditions provided evidence that contaminated feed ingredients represent a risk for transport of pathogens at domestic and global levels. However, it is possible to partially mitigate this risk using selected feed additives. Through evaluation of virus restriction factors, we demonstrated that over-expression of IFITM3 reduces PRRSV replication. Further evaluation of cellular factors involved in PRRSV replication in-vitro may lead to improved control of this disease.
Publications
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Dee, S., M. Niederwerder, R. Elder, D. Hanson, A. Singrey, R. Cochrane, G. Spronk, E. Nelson. 2020. An evaluation of additives for mitigating the risk of virus-contaminated feed using an ice-block challenge model. Transboundary and Emerging Diseases. doi:10.1111/tbed.13749.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Dee, S., A. Shah, R. Cochrane, A. Wu, T. Clement, A. Singrey, R. Edler, G. Spronk, M. Niederwerder, E. Nelson. 2020. Use of a demonstration project to test the effect of extended storage on viral survival in feed: Proof of concept. Transboundary and Emerging Diseases. doi: 10.1111/tbed.13682.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Dee, S., M. Niederwerder, G. Patterson, R. Cochrane, C. Jones, D. Diel, E. Nelson, G. Spronk, E. Brockhoff, P. Sundberg. 2020. The risk of viral transmission in feed: What do we know, what do we do? Transboundary and Emerging Diseases. doi: 10.1111/tbed.13606.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Dee, S., J. DeJong, C. Neill, B. Ratliff, A. Singrey, E. Hansen, E. Nelson, J. Keegan, A. Gaines. 2020. Inactivation of porcine epidemic diarrhea virus in contaminated swine feed through inclusion of a dry lactic acid-based product. JSHAP 28:213-216.
- Type:
Journal Articles
Status:
Published
Year Published:
2020
Citation:
Benfield, D., J. Lunney, M. Murtaugh, E. Nelson, F. Osorio, R. Pogranichniy, S. Ramamoorthy, R. Rowland, J. Zimmerman, F. Zuckermann. 2020. The NC229 Multi-station Research Consortium on Emerging Viral Diseases of Swine: Solving stakeholder problems through innovative science and research. Virus Research 280. doi.org/10.1016/j.virusres.2020.197898.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Vinson, H., G. Singh, A. Pillatzki, B. Webb, E. Nelson, S. Ramamoorthy. 2019. Delivery of a thermo-enzymatically treated influenza vaccine using pulmonary surfactant in pigs. Vet. Micro. 239:108492. DOI: 10.1016/j.vetmic.2019.108492.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Singh, G., O. Zholobko, A. Pillatzki, B. Webb, E. Nelson, A. Voronov, S. Ramamoorthy. 2019. An amphiphilic invertible polymer as a delivery vehicle for a M2e-HA2-HA1 peptide vaccine against an Influenza A virus in pigs. Vaccine. 37(31):4291-4301. doi.org/10.1016/j.vaccine.2019.06.030.
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Fernandes, M.H.V., M.F. Maggioli, J. Otta, L.R. Joshi, S. Lawson, D.G. Diel. 2019. Senecavirus A 3C protease mediates host cell apoptosis late in infection. Frontiers in Immunology 10:363 doi: 10.3389/fimmu.2019.00363
- Type:
Journal Articles
Status:
Published
Year Published:
2019
Citation:
Sharma, B., M.H.V. Fernandes, M. DeLama, L.R. Joshi, S. Lawson, D.G. Diel. 2019. A novel live attenuated vaccine candidate protects against heterologous senecavirus A challenge. Frontiers in Immunology, Manuscript 487682 https://doi.org/10.3389/fvets.2019.00347
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
Rauh, R., T. Clement, J. Christopher Hennings, S. Lawson, S-L Zhai, J-Y Ma, J.D. Callahan, E.A. Nelson, D.G. Diel. 2019. Development of a novel multiplex real-time PCR for the detection and differentiation of SADS-CoV, an emerging swine coronavirus. Abstract #60. North American PRRS Symposium. Chicago, Il. Dec. 2-3.
- Type:
Conference Papers and Presentations
Status:
Published
Year Published:
2019
Citation:
Diel, D., S. Lawson, F. Li, E. Nelson, D. Wang, X. Wang, J. Christopher-Hennings. 2019. Detection and control of PRRS virus and emerging viral diseases of swine (NC-229 South Dakota). Abstract #65. North American PRRS Symposium. Chicago, Il. Dec. 2-3.
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