Source: SYNSHARK LLC submitted to NRP
DEVELOPMENT OF HIGH SQUALENE TOBACCO
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1019634
Grant No.
2019-33610-29779
Cumulative Award Amt.
$100,000.00
Proposal No.
2019-00736
Multistate No.
(N/A)
Project Start Date
Jul 1, 2019
Project End Date
Feb 29, 2020
Grant Year
2019
Program Code
[8.8]- Biofuels and Biobased Products
Recipient Organization
SYNSHARK LLC
800 RAYMOND STOTZER PKWY
COLLEGE STATION,TX 778456151
Performing Department
(N/A)
Non Technical Summary
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}This proposal from SynShark LLC of College Station, Texas, addresses the use of non-food biobased products whereby new technology unlocks the competitiveness of value added terpenes from tobacco.Through optimization of squalene extraction from SynShark tobacco as a competitive substitute to the status quo, the Company can enhance agricultures role as a supplier of a raw materials market reliant on animal mass from the seas. This approach to delivering squalene addresses two sustainability issues, 1) the immediate need for switching in a declining American tobacco farming sector, and 2) ocean ecology issues resulting from the needless 'livering' of deep water sharks for this product.The Companywill support tobacco farmers looking to replace low value smoking leaf with a specialty tobacco that can bring extra income to farmers. Much can be said about the continued loss of tobacco growing contracts in the American South, but more needs to be understood about the high cost of switching to different crops. Through our current scale-up of squalene accumulating tobacco lines, the Company will address simultaneously the marketneed for squalene as well as the agricultural community's need for new high value crops that can be cultivated with existing infrastructure and knowledge.Through terpenoid metabolic engineering, the Company can successfully shift the fundamental carbon allocation pathways within tobacco allowing for increased accumulation of the triterpene squalene. Phase I research will focus on optimizing this method as during the Company's operating history plant, it became apparent that plant squalene yield has the single most direct effect on profitability. The Team has the specific expertise and experience to reach enough squalene yield in SynShark tobacco to achieve commercialization success.
Animal Health Component
40%
Research Effort Categories
Basic
50%
Applied
40%
Developmental
10%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
20119991080100%
Goals / Objectives
Goal:p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}SynShark's goal for this project is to integrate existing successes from the company to enhance the squalene production in tobacco through yield improvement.Objective 1:p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Technology Integration and Vector Constructionp.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}In phase 1, we will focus on integrating C2 and C5 redirection pathway redirection, synthetic droplet, and downstream attenuation technologies. Strong constitutive promoters will be used in each cassette. The C2 and C5 redirection pathways work by allocating sufficient carbon to the MEP pathway and directing it toward squalene biosynthesis. Fragment amplification and assembly will be done using the Gibson methods for homology guided self-assembly. Primers will be designed in silico amended from the NEBuilder Assembly Tool to have unique overhangs to allow for self-assembly of fragments. Assembly of complete cassettes of genetic targets for overexpression downstream of the MEP pathway will be done prior to entry into the expression vector. The expression vector will utilize existing carbon repartition constructs to generate single fragments for assembly. Following construction, the plasmids will then be transformed into DH5? E. coli competent cells by electroporation. Permutations of overexpression targets downstream will include one of the three carbon reallocation schemes.Objective 2:p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Cloning, Transformation, and Confirmation - Generation of Engineered Linesp.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Following incubation at 37C for 12 hours, individual DH5? colonies successfully transformed will be selected for using antibiotic selection LB media and colony PCR. After colony screening, 5ml liquid cultures will be grown overnight at 37C in an orbital shaker (250rpm) for plasmid isolation. Following restriction enzyme digest confirmation, complete plasmids will be sent for sequencing though the T-DNA region. After making glycerol stocks, the vector can be transformed into Agrobacterium tumefaciens GV1301 through electroporation. Transformed competent cells will be spread on selection YEP media to grow at 28C for two days. These colonies, after selection and confirmation again, will be used to transform tobacco explants. Preparation of sterile explant material (young leaf tissue) in vitro will consist of germinating N. tabacum L. 1068 seed on MS media petri dishes. Transfer to sterile MS jars or magenta boxes to produce young sterile tobacco leaves. Using a small-bore cork borer or forceps with a scalpel I excise 10 to 12 healthy, young leaves to prepare explants (approximately 2-3cm2 explant surface area) while working within a laminar flow hood. This will be completed during the transformation, but transformation material generation will begin week one to ensure healthy sterile leaf tissue on time. Sterile germination of non transgenic background tobacco for transformation will begin 6-8 weeks before transformation to ensure proper starting material.p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Preparation of the inoculum begins days before the transformation, allowing for the A. tumefaciens time to reach an OD600 of 0.6-0.8 before co-cultivation. Centrifugation of the liquid cultures at 4,000rpm for 10min, decanting of the bacterial media, and rise of sterile water before resuspension in either water or 1/2 MS liquid media is sufficient for inoculum preparation. Co-cultivation OD600 target is between 0.4-0.6 once resuspended.Co-cultivation of resuspended Agrobacterium with tobacco explants will allow for transfer of TDNA fragments into tobacco host cell genomes, typically 1 hour is enough time before straining the suspension. In the sterile flow hood, explants can be left to dry prior to being placed on MSor 1/2MS for 1 to 2 days depending on OD of the resuspension and virulence of the Agrobacterium strain. Selection following Agrobacterium-mediated transformation will be done using negative selection growth media utilizing herbicide resistance in transformants as a selection marker, while also selecting against bacterial overgrowth using cefotaxamine. Postselection, regeneration and rooting will be achieved by physiological response to natural stimuli (i.e. light, gravity) and aided by media supplemented with IAA or BAP to direct organogenesis of transformed tissues. Post-regeneration, acclimation to passive air (hardening off) before transfer to soil allows for genetic sampling. Amplification of T-DNA fragments will be used toscreen transformants prior to potting in soil. Initially transformants will be planted into a propagation flat with a clear dome cover and under mixed spectrum T5 grow lights in a temperature controlled room to reduce loss from stress.Objective 3:p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Preliminary Analysis of T0 and T1 generation for squalene contentp.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}Before transferring to 1 gallon pots and put in the greenhouse, initial squalene extraction and quantification will be performed using hexane extraction methods followed by column separation, and analyzed by GC/MS using previously reported method from the Yuan lab.Post-run Analysis and Data - Integration and quantification of peaks will be done using analytical standards as references. Quantification of squalene will then be correlated back to sample loading and standardized to mg/G dry weight. Based on calculated ratio of fresh leaf material to lyophilized mass, an estimate of fresh weight to yield can be derived. This will serve as a metric for economic feasibility, based on costs associated with generating the mass required of transgenic material (i.e. acreage productivity, scaled extraction, etc).High yielding lines will be further evaluated and transplanted to 5 gallon pots when ready. Seed will be collected from the higher yielding lines to propagate the next generation. Germination of T1 and subsequent generations will be done on MS media, and transplanted to selective media after emergent cotyledons are fully expanded. Individual lines will be evaluated for segregation ratio, and in eventual generations will show line stabilization. As with T0 plants, T1 lines will be evaluated for squalene content as previously described. A comprehensive report ofp.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica}findings will be the majority of Phase 1 deliverables. Tobacco lines with significantly elevated squalene content will also be deliverables after phase 1.
Project Methods
High yielding lines will be further evaluated and transplanted to 5 gallon pots when ready. Seed will be collected from the higher yielding lines to propagate the next generation. Germination of T1 and subsequent generations will be done on MS media, and transplanted to selective media after emergent cotyledons are fully expanded. Individual lines will be evaluated for segregation ratio, and in eventual generations will show line stabilization. As with T0 plants, T1 lines will be evaluated for squalene content as previously described. A comprehensive report of findings will be the majority of Phase 1 deliverables. Tobacco lines with significantly elevated squalene content will also be deliverables after phase 1. ?In order to address these questions ANOVA will be used to determine significant variation between groups (lines) of tobacco plants based on squalene content, standardized to non-transgenic background line samples from the same environment and collected with each sample batch. This analysis between permutations of pathway utilizations in different constructs will allow us to determine which pathways are additive and which components are possibly synergistic, as well as components that have no significant impact on squalene synthesis. To increase statistical resolution within squalene yield, an intermediate vector can be constructed for use as a binary vector with single omissions or additions to existing permutations. Within lines, significant yield variances will be analyzed using a pairwise t-test. This will be used for variance within lines because each sample is compared with itself or, in other words, determines whether they differ from each other in a significant way under the assumptions that the paired differences are independent and identically normally distributed. Statistically significant elevation in squalene content between construct designs using ANOVA, and then within the higher performing lines using a pairwise t-test analysis, will allow for selection of the deliverable line of high yielding squalene tobacco.

Progress 07/01/19 to 02/29/20

Outputs
Target Audience: American Tabocco Farmer, e.g., Vick Family Farms: As a major tobacco farmer in the largest tobacco farming state, SynShark's crop is critical to the Vick Family Farms. The concept of having valuable terpenes extracted from one of Vick Family Farm's important crops is an exciting opportunity. Vick Family Farms have been working with SynShark on this pursuit including the Phase I period. Vick Family Farms has provided a strong letter of commitment to invest in the growth of SynShark - details included in SynShark's Phase II application. OEMs, e.g., Deutsche Process: Deutsche Process is a sanitary processing equipment manufacturer for a broad range of multiple industries specializing in liquid processing and down stream refinement. Deutsche Process is a sister company of the Deutsche Beverage Technology and Ink Keg brands, and are an industry leader in turnkey beverage solutions for the craft beer sector. During the Phase I period, Deutsche Process and Synshark have collaborated on the extraction of high-yield terpene production from tobacco. This year, working with SynShark, Deutsche Process was able to demonstrate an effective extraction of SynShark's squalene rich oil by using Ethanol and a lab scale version of our Counter-Current Rotax Extraction System, which can now be scaled to industrial capacity. Deutsche Process' expertise in extraction can be leveraged to address downstream challenges to provide seamless integration of Synshark's novel approach. Deutsche Process provided a stong letter of support for our Phase II application. US Tobacco Manufacturer, e.g., Tobacco Rag Processors, Inc. (TRP): TRP's interest in SynShark is based on its strategic intent to process local agriculture for future markets. TRP belives that the combination of SynShark's technology combined with TRP's farming reach and manufactirng expertise is a compelling partnership for both entities. TRP has provided a letter of intent to invest in capiral shares of SynShark - details included in our Phase II application. Changes/Problems:The deliverables from Phase I toward the Carbon Repartition task (Task 1) were altered due to a sub-awardee change. Partnership with a tobacco breeding research group at NCSU has led to the incorporation of an organized breeding scheme using pairwise crosses for combining squalene accumulation technologies. The genetically uniform F1 progeny resulting from these crosses allowed comparison of C2 and C5 strategies when coupled with other successful storage and downstream inhibition technologies. This new shift in strategy resulted in increases in squalene titer and more stability in yield prediction than has been observed in previous iterations of the various technologies. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? The Phase I project work addresses the use of non-food biobased products whereby SynShark's new technology unlocks the competitiveness of value added terpenes from tobacco. Through optimization of squalene extraction from SynShark tobacco as a competitive substitute to the status quo, the Company can enhance agriculture's role as a supplier of a raw materials market reliant on animal mass from the seas. This approach to delivering squalene addresses two sustainability issues, 1) the immediate need for switching in a declining American tobacco farming sector, and 2) ocean ecology issues resulting from the needless 'livering' of deep water sharks for this product. The Phase I work supports tobacco farmers looking to replace low value smoking leaf with a specialty tobacco that can bring extra income. Much can be said about the continued loss of tobacco growing contracts in the American South, but more needs to be understood about the high cost of switching to different crops. Through our current scale-up of squalene accumulating tobacco lines, the Company addressed simultaneously the market need for squalene rich oils as well as the agricultural community's need for new high value crops that can be cultivated with existing infrastructure and knowledge. During the Phase I period, through terpenoid metabolic engineering, the Company has successfully shifted the fundamental carbon allocation pathways within tobacco allowing for increased accumulation of the triterpene squalene. Squalene as an adjuvant is one of the critically studied aspects of delivering a vaccine for Coronavirus 2019 (COVID-19), and shark derived squalene is unthinkable for manufactures.[i] The Team has the specific expertise and experience to reach enough squalene yield in SynShark tobacco to achieve commercialization success. Phase I accomplishments focus on transforming SynShark's scientific discovery on enhanced terpene production from tobacco into products with commercial potential and societal benefit. SynShark has successfully proved the feasibility of this technology in the Phase I period. Over the course of the Phase I period, SynShark has proven that this early or "seed" stage research and development effort in molecular genetics and purification has commercial potential, most notably in creating an alternative source for squalene and help build a strong, biomanufacturing-based economy. Phase I results showed that the data from this redistribution channel revealed increased carbon allocation into the MEP for terpene synthesis when coupled with strong downstream squalene sink. SynShark was able to localize it away from the downstream pathway by synthesizing these molecules in the stroma. Further efforts to compartmentalize the compound was successful by the addition of modified oleosin proteins to sequester the squalene within protective oil bodies. SynShark hypothesizes that part of the success of squalene accumulation in Company plants is due to the fact that squalene production was engineered into the energetically favorable MEP pathway, whereas native squalene synthesis occurs in the cytosolic MVA pathway. This provides a natural sequestration from the enzymes involved in downstream squalene metabolism. The Phase I research was focused on optimizing the squalene production in SynShark tobacco plants. Through the three objectives explained below, the Company was able to gain enough information to control the squalene yield in SynShark tobacco plants. This has been a crucial achievement as squalene yield is the most important step to long-term return on investment. This drives both the ability to purify an end product and a pathway to control other valuable terpenes. The team believes, however, that they have the specific know-how and experience to further improve the squalene yield in Phase II and bring tobacco-based terpene production closer to commercialization. Over the course of the Phase I period, SynShark made significant progress in addressing all three technical barriers. #1. Carbon repartition: The first objective of the Phase I effort was to address the technical barriers associated with carbon repartition, the key limiting factor for higher plant biomass and terpene yield. Even though multiple approaches can be exploited to increase photosynthesis limited progress has been made to increase terpene yield by improving carbon fixation alone. In the Phase I period, SynShark focused on re-channeling and re-distributing photorespiration products, enabling it to couple intermediate channeling with terpenoidbiosynthesis. In particular, considering that G3P exists abundantly in chloroplast, the available pyruvate has greatly promoted carbon flux channeling to MEP pathway for squalene biosynthesis. The increase of pyruvate has leveraged more G3P to be condensed by DXPS to DXP, the first committed step to downstream MEP pathway terpene production. Overall, the Phase I results showed that can increase terpene yield. This strategy was shown to increase carbon allocation to the MEP and will be optimized in the Phase II period to further increase squalene yield. The second objective of the Phase I effort was the storage of final products in planta. For yield purposes, the produced squalene has to be stored in the proper organelles or structures to reduce loss. As aforementioned, several structures including glandular trichomes are involved in terpenoid accumulation. Subcellular droplets have been indicated as a mechanism for squalene storage, an option that has been explored, including SynShark's recent work with squalene. To enhance the squalene yield by the storage organelle, SynShark LLC has licensed the synthetic droplet technology addressing the success criterion of this Phase I objective. Prevention of downstream consumption of squalene: The third objective of the Phase I effort was to prevent the downstream consumption of squalene. Even though chloroplast compartmentation of squalene biosynthesis has led to a significant increase in squalene accumulation, various lines of evidence suggested that squalene might leak out the plastid membrane to be consumed by squalene expoxidase (SQE), which prevented further increases of squalene. Thus,downstream degradation remained the major challenge for squalene production. The instability of squalene in cytosol has not been solved and still hampered squalene production. In order to address this barrier, SynShark has applied Overall, during the Phase I period, SynShark has made significant progresses with three sets of technologies to increase the squalene yield. However, maximizing commercial potential of the technology depends on further increasing the yield. The Company's current model indicates that a 4-6% or more of squalene yield is needed to generate a viable purified squalene product. The combination of these technologies provides realistic approaches to consistently reaching the 4-6% squalene yield target, which will be pursued in the Phase II period along with other novel yield improvement approaches. In addition to addressing the above mentioned squalene yield increasing terpene pathway modification objectives, during the Phase I period, SynShark has explored addressing the commercial bottlenecks in feasibility, mainly harvesting to post-harvesting processing, followed by further processing steps such as molecular distillation and remediation. Overall, this effort was composed of harvest and drying (Task 2), and post-harvest processing; extraction, molecular distillation, and chromatography (Task 3).

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