Source: UNIVERSITY OF WYOMING submitted to
DEVELOPMENT OF GENETIC RESOURCES AND MANAGEMENT PRACTICES FOR SUSTAINABLE GRAPEVINE PRODUCTION IN WYOMING
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
1002839
Grant No.
(N/A)
Project No.
WYO-526-14
Proposal No.
(N/A)
Multistate No.
(N/A)
Program Code
(N/A)
Project Start Date
Apr 19, 2014
Project End Date
Sep 30, 2018
Grant Year
(N/A)
Project Director
Dhekney, SA.
Recipient Organization
UNIVERSITY OF WYOMING
1000 E UNIVERSITY AVE DEPARTMENT 3434
LARAMIE,WY 82071-2000
Performing Department
Plant Sciences
Non Technical Summary
Grape production in Wyoming evinces strong interest from producers seeking viable alternatives to traditional crops and homeowners with backyard plantings. The WY grape industry, which started with two growers in 2001, has now expanded to include approximately 20 producers growing grapes on 25-30 acres with an annual production of 40-45 tons of fruit. Harsh climatic conditions including freezing winter temperatures, spring frosts and a short growing season prevent the cultivation of traditional grape (Vitis vinifera) cultivars in WY. Intensive breeding efforts have led to development of new cold-hardy hybrids suitable for production in colder regions including Wyoming. Diverse soils and variable climatic conditions throughout the state necessitate identification of region-specific cultivars and rootstocks, standardization of vineyard management practices, and continued improvement of available grape germplasm. The project will study establishment, growth, yield and quality attributes of several grapevine cultivars at two locations in Wyoming. Existing grape germplasm will be further improved for drought and salinity tolerance using genetic engineering technology. Identifying suitable cultivars and optimizing management practices will enable Wyoming growers and homeowners to make the right choice of cultivar/s, improve production and ensure faster recovery of establishment costs. Genetic engineering of existing germplasm for abiotic stress tolerance will result in rapid improvement of existing cultivars without altering existing desirable characteristics. New knowledge obtained from this project will help in the expansion of area under viticulture, and sustainability of the Wyoming grape industry.
Animal Health Component
0%
Research Effort Categories
Basic
60%
Applied
40%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2011131104080%
2021130108020%
Goals / Objectives
Objectives for the project include:1) identify grapevine cultivars that exhibit rapid growth and establishment in specific soils and locations;2) analyze differential gene expression patterns of drought and salinity stressed grapevines to identify genes involved in stress tolerance;3) incorporate abiotic stress tolerance genes in target cultivars and rootstocks using genetic engineering.
Project Methods
1) Identify grapevine cultivars that exhibit rapid growth and establishment in specific soils and locations.Field tests will be conducted at two University of Wyoming research and extension centers (Powell and Sheridan). Vitis interspecific hybrid cultivars (10 cultivars in Powell and 35 cultivars in Sheridan) will be screened for vine growth, establishment, flowering and fruiting, yield and quality parameters. Cultivars have been selected keeping in mind potential cold-hardiness, berry color (white/red for wine production) and after consultation with grape growers statewide.Fall 2012: Soil samples will be collected from test locations and analyzed for pH, E.C. and macro/micronutrients to develop a complete soil profile characterization. Ten replicate vines of each cultivar will be planted in a randomized block design. A five feet tall trellis system will be established using wooden posts (8 feet tall) at 20 feet distance within rows and two wires at 3 and 5 feet (12.5 gauge aluminum wire). End posts will be securely anchored in the ground using 40 inch earth anchors. Existing fenced locations and deer exclusion devices will be used to prevent animal damage to vines.Spring 2013: One year old vines with a robust root system will be planted in one foot deep pits containing 50 g slow-release fertilizer (Osmocote 15:9:12) and trained to two stems on a high cordon system. Vines will be drip-irrigated during periods of active growth and extreme drought. Spot fertilization will be carried out during periods of vegetative growth and fruiting.Spring/Fall 2013, 2014, 2015, 2016 and beyond: The following growth parameters will be recorded for individual cultivars:Plant height: Plant height of individual cultivars will be measured for the first 2 yearsBud swell: Date when vines exhibit full swell. This date in conjunction with temperature data will be used to estimate spring frost susceptibility for individual cultivars.Bud burst: Date when the first emerging leaf separates at the tip of individual buds.Pruning weight: Fresh weight of one year old canes following pruning will be recorded.Fruiting during the first year will be discouraged by removal of any inflorescences to permit vine establishment. From the second year, the following flowering and fruiting parameters will be recordedDate of flower initiation: Date of visible flower buds will be recorded.Time required from flower initiation to berry set: Number of days required from flower initiation to development of pea sized berries.Time required for ripening: Days from flowering to berry ripening will be recorded. This data along in conjunction with temperature data will be used to calculate growing degree days (GDD) requirement.Berry parameters: Number of berries per bunch, number of bunches per vine, type of ripening (even/uneven), individual berry weight and yield per vine will be recorded for individual cultivars.Fruit quality: Berry TSS (total soluble solids, which are generally used to indicate sweetness), number of seeds per berry, sugar: acid ratio and organoleptic evaluations will be recorded for individual cultivars.Test locations will be monitored for any potential problems including disease, pests and physiological disorders.2) Analyze differential gene expression patterns of drought and salinity stressed grapevines to identify genes involved in stress tolerance.Differential gene expression patterns in abiotically stressed grapevines will be analyzed using microarrays and subtractive hybridization. A drought/salt tolerant species (V. rupestris) and susceptible species (V. vinifera) will be used for RNA isolation. Two year old, greenhouse-grown grapevines will be exposed to drought and salinity stress treatments. For microarray analysis, leaf samples will be obtained from various stress treatments and controls, and instantly frozen in liquid nitrogen. Total RNA will be isolated according to the protocol described by Boss et al. (1996). DNA will be removed from samples using RNase free DNaseI treatment according to the manufacturer's instructions (Promega, Madison, WI, USA) followed by a cleanup with RNeasy mini kit (Qiagen, Valencia, CA, USA). Pure RNA will be used for microarray analysis. Double-stranded cDNA will be synthesized from 5 µg of total RNA from each treated sample. Labeled cDNA, synthesized from mRNA will be hybridized to an Affymetrix grape whole genome array. The hybridization signal of the arrays will be obtained and quantified through Affymetrix (London, ON, Canada). The resulting microarray data will be analyzed using GeneSpring software (Agilent, CA, USA) to obtain a list of genes that are up- or down-regulated by stress treatments. Additionally, software such as Mapman and online annotation tools such as Agri-GO will be used to obtain information on the pathways involved in abiotic stress tolerance. These results will be compared to those obtained from previous grapevine microarray data and other plant species to identify candidate genes. For subtractive hybridization, RNA will be isolated from stressed and control grapevines as described above. Following cDNA synthesis and digestion with suitable restriction digestion enzyme, cDNA from treated samples (TESTER) and controls (DRIVER) will be ligated with specific adapter sequences to incorporate a label and enable hybridization between the TESTER and DRIVER samples. Resulting hybridizing sequences will be removed to recover any unhybridized cDNA sequences that are differentially expressed in the TESTER as a result of abiotic stress treatments. Such sequences will be amplified using suppression PCR, ligated into cloning vectors and sequenced. Amplified DNA sequences will be compared with sequences in DNA databases and the sequenced grape genome to confirm identity. Identified regulatory and functional genes involved in abiotic stress tolerance will be transferred to expression vectors for plant transformation.3) Incorporate abiotic stress tolerance genes in target cultivars/rootstocks using genetic engineering.Embryogenic cultures will be established from leaves, stamens and pistils of target cultivars and rootstocks. Candidate genes (regulatory and functional genes identified in Objective 3) will be isolated from grapevine genomic DNA using PCR. Following DNA sequencing, the genes will be placed along with reporter/marker fusion genes (GFP, VvMyb1a, NPTII) under the control of a bidirectional duplex promoter complex. Genetic constructs will be transferred to Agrobacterium tumefaciens strain 'EHA 105' and used in genetic engineering studies. We have standardized protocols for genetic engineering of several Vitis cultivars, species and hybrids (Dhekney et al. 2008; 2009). Somatic embryos at the mid-cotyledonary stage of development will be used for Agrobacterium-mediated transformation. Following co-culture and growth on plant tissue culture medium with antibiotics (to inhibit bacterial growth), transgenic embryo lines produced by secondary embryogenesis will be identified on the basis of GFP fluorescence and anthocyanin pigmentation. Transgenic embryos will be germinated to produce plants. Transgene presence and copy number will be confirmed by PCR and quantitative real-time PCR, while protein expression will be measured using ELISA and Western blotting. Independent plant lines transfered to a greenhouse will be vegetatively propagated to produce replicate clones. Rooted cuttings will be grown in pots containing Promix BX potting mix (A. H. Hummert Seed Co., St Louis, MO, USA) and the recommended fertilizer dose under standard drip irrigation regime. Four month old plants will be screened for drought and salinity tolerance along with non-transformed plants (negative controls). The promising lines will be repeatedly tested for their response and those that exhibit significant tolerance will be considered for future field-testing.

Progress 04/19/14 to 09/30/18

Outputs
Target Audience: Nothing Reported Changes/Problems:Project Director is no longer at the University of Wyoming. What opportunities for training and professional development has the project provided? Nothing Reported How have the results been disseminated to communities of interest? Nothing Reported What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? n/a

Publications


    Progress 10/01/16 to 09/30/17

    Outputs
    Target Audience:Presentations were made on grape production for updating grape growers and interested homeowners in research activities being carried out for expanding viticulture activities in Wyoming. Presentations and visits were carried out at the annual field days in Sheridan (280 people over 3 years) and Powell (200 people over 3 years). Information to several growers and homeowners was also provided via phone consultations. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Community college and undergraduate students were involved in experiments involving vineyard management, data collection, and laboratory experiments including total RNA isolation and analyses. Two students were trained in RNA sequencing technology. How have the results been disseminated to communities of interest?The results have been presented at field days and undergraduate research days. What do you plan to do during the next reporting period to accomplish the goals?We will continue to screen additional genetic elements, genes and selectable markers for use in precision breeding of grapevines. Data will be collected on cold-hardiness, yield and fruit quality of grapevines growing in the cultivar evaluation trial.

    Impacts
    What was accomplished under these goals? Data on bud break, number of inflorescences per vine, yield per vine, number of clusters, cluster weights, individual berry weights and TSS were recorded. Frontenac, Frontenac Gris and Osceola Muscat were the highest yielding cultivars. Most Vitis labrusca hybrids such as 'Elvira', 'Concord', 'Ives' and 'Fredonia' are extremely late maturing and ripening for the Sheridan area and not suitable for production due to the risk of crop being lost to an early Fall freeze. Efforts continued to advance precision breeding technology for genetic improvement of grapevine. Grapevine leaf samples were collected from field-grown grapevines exposed to low temperatures for RNA sequencing studies. Total RNA was isolated and will be sent for RNA sequencing to compare differential gene expression of grapevines exposed to abiotic stress. The Vitis rupestris-derived CBF1 gene is induced in response to multiple abiotic stress factors (cold/drought/salinity) and triggers the expression of functional genes involved in imparting stress tolerance. Preliminary results indicated that the constitutive expression of this transcription factor inhibited plant growth and development, which might necessitate expression of this regulatory gene under the control of stress inducible genetic elements. Additional grapevine-derived transporter and antiporter genes are also being tested to impart abiotic stress tolerance.

    Publications

    • Type: Conference Papers and Presentations Status: Published Year Published: 2017 Citation: Baldwin, M. and Dhekney, S.A. 2017. The grape research program at the University of Wyoming. Proceedings of the 5th International Conference on Steep Slope and Mountain Viticulture, 55-60.


    Progress 10/01/15 to 09/30/16

    Outputs
    Target Audience:Research results were presented to grape growers statewide and at the world congress on in vitro biology held in San Diego in June 2016. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?A graduate student completed his PhD dissertation as part of the project. How have the results been disseminated to communities of interest?Research results were presented at the 2016 World Congress on In Vitro Biology held in San Diego in June 2016. What do you plan to do during the next reporting period to accomplish the goals?Additional transcription factors will be isolated and placed under the control of tissue specific- and stress-inducible promoters for transformation in grapevine. Regenerated plants will be screened for abiotic stress tolerance.

    Impacts
    What was accomplished under these goals? C-repeat binding factors (CBF) and ion-transporters were isolated from rootstocks of V. rupestris and gene sequences were analyzed for important regulatory elements conferring stress tolerance. The CBF1 gene was cloned into a binary vector and transferred into susceptible V. vinifera spp using genetic engineering. Somatic embryos at mid-cotyledonary stage of development were used to insert the gene construct. No significant difference was observed in transient and stable gene expression. Transgenic embryos was recorded to be 7.95 - 8.5% however a limited number of transgenic lines were recovered following embryo germination. Abnormality in embryo germination and plant regeneration was routinely observed in the form of malformation, stunted growth or tissue necrosis. It can be attributed to overexpression of CBF1 gene which activates several regulatory genes in a downstream pathway. Higher amount of regulatory proteins being produced could be the possible reason of negative phenotype appearance. Over expression of CBF1 may be due the same core promoter divergently placed upstream of the duplicated enhancer in a bi-directional dual promoter configuration in vector.

    Publications

    • Type: Journal Articles Status: Published Year Published: 2017 Citation: Kandel, R., Dutt, M., Gray, D.J., Li, Z.T., Bergey, D.R., Sitther, V., and Dhekney, S.A. 2017. Evaluation of a grapevine-derived reporter gene system for precision breeding of Vitis. Plant Cell Tissue and Organ Culture, 124: 599-609.


    Progress 10/01/14 to 09/30/15

    Outputs
    Target Audience:Grape growers, interested homeowners, master gardeners, and other scientists studying grape genetics. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?A graduate student completed his PhD program and several undergrduate students were involved in grape tissue culture experiments. How have the results been disseminated to communities of interest?Several scientific papers were published and presentations were made on grape production at the following locations for updating grape growers and interested homeowners in research activities being carried out for expanding viticulture activities in Wyoming. Talks were presented at the Master gardeners' conference in Sheridan, WY. A presentation was made to the Sheridan county master gardeners in April 2015. A grape production workshop was conducted in Powell in May 2015 to provide information on the use of the right training and pruning systems for cold-hardy grapevine cultivars. Presentations and visits were carried out at the annual field days in Sheridan and Powell. A number of prospective and current grape growers visited the vineyard and obtained information on suitable cultivars and vineyard establishment procedures. What do you plan to do during the next reporting period to accomplish the goals?Wewill continueto screengrapevine-derived screen abiotic-stress inducible genes, genetic elements and reporter genes for use in precision breeding.

    Impacts
    What was accomplished under these goals? Field trials for year 2015 included collecting data on grapevine cultivar response and cold hardiness at two trials established in Sheridan and Powell. The unseasonal freeze that occurred in September 2014 caused significant delays in grapevine establishment at Sheridan. Additionally a field trial to estimate water requirement of mature vineyards and study the effect of landscape fabric on grape yield and quality was established at a grower's vineyard in Wheatland, WY. Experimental treatments were established and preliminary data was collected. Fruit obtained from the experimental plot was used to make wine. The wine was evaluated at a multistate meeting (NE1020) by comparing it for quality characteristics with wine made by other grape research programs in the United States. The laboratory component of my program focusses on studying the genetics of abiotic stress tolerance and utilizing this information for grapevine improvement. We continued to grapevine-derived screen abiotic-stress inducible genes, genetic elements and reporter genes for use in precision breeding. A Vitis-derived MybA1 transcription factor was optimized for use as a reporter gene.

    Publications

    • Type: Conference Papers and Presentations Status: Published Year Published: 2015 Citation: Dhekney, S.A., Kandel, R., Vardiman, J., Bergey, D.R., and Gray, D.J. 2015. Screening grapevine cultivars for adaptability to soil and climatic conditions in Wyoming. HortScience, S112.
    • Type: Conference Papers and Presentations Status: Published Year Published: 2015 Citation: Dhekney, S.A., Kandel, R., Bergey, D.R., Shafer, H., Sitther, V., Li, Z.T. and Gray, D.J. 2015. Studying micropropagation response of cold-hardy grapevine cultivars. P-2038. In Vitro Cell. Dev. Biol.  Plant, DOI 10.1007/s11626-015-9906-y
    • Type: Conference Papers and Presentations Status: Published Year Published: 2015 Citation: Kandel, R., Dutt, M., Gray, D.J., Li, Z.T., Bergey, D.R., Sitther, V., Quarterman, I., and Dhekney, S.A. 2015. Optimizing parameters for precision breeding of grapevine. HortScience, S112.
    • Type: Other Status: Published Year Published: 2015 Citation: Dhekney, S.A., Kandel, R., Bergey, D.R., Smith, D., and Vardiman, J. 2015. . Screening grapevine cultivars for adaptability to soil and climatic conditions in Wyoming.. UW AES Field Days Bulletin, 121.


    Progress 04/19/14 to 09/30/14

    Outputs
    Target Audience: Presentations were made on grape production to update grape growers and interested homeowners in research activities being carried out for expanding viticulture activities in Wyoming.Prospective grape growers were provided with information forvineyard establishment. Presentations on grape production and vineyard establishment were given at the Casper County master gardener program in Casper and Powell, WY, and at field days held at the Sheridan and Powell Research and Extension Centers. Additionally, information on grape production was also provided via email and phone conversations. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Two community college students (Sheridan College) and three UW undergraduate students carried out some internships in gene cloning and somatic embryogenesis. How have the results been disseminated to communities of interest? Presentations were made on grape production at the following locations for updating grape growers and interested homeowners in research activities being carried out for expanding viticulture activities in Wyoming. What do you plan to do during the next reporting period to accomplish the goals? Selected candidate gene sequences along with the assembled genetic elements for constitutive expressionwill be rapidly incorporated into binary vectors using the Gateway Clonase technology and transferred to Agrobacterium. Agrobacterium harboring the binary constructs will be used for cocultivation with embryogenic cultures and recovery of transgenic plant lines.

    Impacts
    What was accomplished under these goals? Objective 1. The winter and spring of 2014 experienced record cold temperatures with minimum temperatures exceeding - 20F in December and February. Day/s of bud break in specific cultivars and at both locations was recorded. Following bud break, the total survival rates and individual survival rates in specific cultivars was recorded. All vines that exhibited bud break and some growth symptoms by June 25 were considered to have survived the 2013-14 winter and spring freeze-induced damage. Plant height was recorded by July 25, which is when most of the vines for all cultivars reached the top wire of the high wire cordon system (5 feet). We observed differences in survival rates between cultivars at the Sheridan and Powell location. While high survival rates (70% and higher) were observed in most cultivars in Sheridan, the overall survival rate in Powell was 40%. Objective 2. Vitis interspecific hybrid "Richter 110" was subjected to salt stress and total RNA was isolated from shoot tissues. Genes from the CBF, NAC, NHX, SOS and type 1 H+-phyrophosphatase families that are either induced during salt stress or implicated in salinity tolerance were recovered. The cDNA sequences were inserted in cloning vectors and sequenced. Sequences showing a 100% homology will be used for insertion in binary vectors and used in transformation studies. Objective 3. Embryogenic cultures were initiated and established in V. vinifera 'Thompson Seedless', 'Merlot' and Vitis interspecific hybrids 'Seyval Blanc', 'Bronx Seedless' and 'Richter 110'. Embryogenic cultures are currently being maintained on embryo development medium and will be used in gene insertion studies.

    Publications

    • Type: Journal Articles Status: Published Year Published: 2014 Citation: Gray, D.J., Li, Z.T., and Dhekney, S.A. 2014. Precision breeding of grapevine for improved traits. Plant Science, 228: 3-10.
    • Type: Journal Articles Status: Published Year Published: 2014 Citation: Li, Z.T., Kim, K.H., Dhekney, S.A., Jasinski, J.R., Creech, M.R., and Gray, D.J. 2014. An optimized procedure for plant recovery from somatic embryos significantly facilitates the genetic improvement of Vitis. Horticulture Research, 1: 1-7 doi:10.1038/hortres.2014.27.