Source: WASHINGTON STATE UNIVERSITY submitted to
IDENTIFYING SIGNAL MOTIFS FOR TRANSPORT THROUGH THE TYPE III SECRETION SYSTEMS OF VIBRIO PARAHAEMOLYTICUS
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
0225950
Grant No.
2011-67011-30651
Project No.
WNV-NYDAM
Proposal No.
2010-05232
Multistate No.
(N/A)
Program Code
A7101
Project Start Date
Sep 1, 2011
Project End Date
Aug 31, 2013
Grant Year
2011
Project Director
Nydam, S. D.
Recipient Organization
WASHINGTON STATE UNIVERSITY
240 FRENCH ADMINISTRATION BLDG
PULLMAN,WA 99164-0001
Performing Department
Veterinary Science
Non Technical Summary
The type III secretion system (T3SS) is a bacterial structure that forms a needle-like complex used to transport specialized "effector proteins" into cells to cause or exacerbate disease. The T3SS is an important virulence factor in many food-borne pathogens including Salmonella and E. coli O157:H7. Vibrio parahaemolyticus, a seafood-borne pathogen, harbors two distinct T3SSs, T3SS1 and T3SS2, that use effector proteins to cause cell death and gastroenteritis, respectively. V. parahaemolyticus is estimated by the Centers for Disease Control and Prevention (CDC) to cause over 8000 infections annually. Consumption of raw or undercooked shellfish is the primary risk factor and infection results in symptoms including watery diarrhea, abdominal cramps, vomiting, headaches, and more serious infections that may result in death. V. parahaemolyticus has a worldwide distribution with increasing incidence since 1996 that is expected to increase further with rising ocean temperatures associated with global warming. Many studies of the V. parahaemolyticus T3SSs have focused on the roles of the T3SSs and select effector proteins in pathogenesis, while relatively little work has examined the molecular signals responsible for effector protein trafficking through the T3SS. Our studies aim to determine the roles of the signals involved in regulating effector transport through the T3SSs in V. parahaemolyticus. Through this work we will gain insight into the nature of the interactions between effectors and the T3SS, which may offer unique targets for therapeutic intervention both in Vibrio and other organisms harboring a T3SS.
Animal Health Component
(N/A)
Research Effort Categories
Basic
100%
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
7124010104015%
7124010110015%
7125010104010%
7125010110010%
7234010104015%
7234010110015%
7235010104010%
7235010110010%
Goals / Objectives
Type III secretion systems (T3SSs) form a needle-like complex that translocates specialized "effector proteins" into host cells to disrupt normal host-cell physiology. T3SSs are important virulence factors in food-borne pathogens including Yersinia, Salmonella and E. coli O157:H7. Vibrio parahaemolyticus, a seafood-borne pathogen, harbors two phylogenetically distinct T3SSs, T3SS1 and T3SS2, that use effector proteins to induce host-cell death and enterotoxicity, respectively. Effector proteins are thought to encode a secretion signal (export sequence), chaperone-binding domain, and a catalytic domain, and we have hypothesized that an export sequence is required for secretion through the T3SS, but both an export sequence and chaperone-binding domain are required for T3SS specificity and translocation of effector proteins. Our long-term goal is to use V. parahaemolyticus as a model system to better understand the regulation of the T3SS as a means to identify alternative control and therapeutic strategies for Vibrio as well as other food-borne pathogens. We intend to accomplish this through the following specific aims: (1) use bait-and-capture experiments to identify chaperone proteins that bind T3SS1- and T3SS2-specific effector proteins; (2) identify the export sequence and chaperone-binding domain for these effector proteins; and (3) use homologous recombination to both remove and exchange these signaling motifs to directly assess secretion, specificity and translocation of effector proteins. We expect to identify novel chaperone proteins and determine effector protein export sequences within the first year of study, and to identify the chaperone-binding domains and assess the roles of the signaling motifs by the end of the second year. We expect that this work will culminate in the publication of 1-2 peer-reviewed papers in reputable scientific journals. Additionally, during the period of this study I will assist with teaching the laboratory section of the General Bacteriology course taught by Dr. Devendra Shah to veterinary students at Washington State University in the fall semester of 2011 and 2012. Here I will contribute to the training of DVM students in laboratory techniques and diagnostic testing as they relate to clinical disease in animals. We will also recruit two summer students for the duration of the fellowship to work with me directly. We will meet weekly to discuss research efforts and to help the summer students develop and refine one-page concept and objective papers while they learn basic molecular lab skills such as PCR, cell culture and cloning. I will be responsible for the day-to-day training of the students while they are a part of my research efforts. The goal of this additional training is to develop important skills in training/mentoring students on how to develop projects, describe them in writing, and execute well-designed experiments.
Project Methods
To identify effector specific chaperones, T3SS1 and T3SS2-specific effectors will be polyhistidine(His)-tagged and expressed in V. parahaemolyticus followed by cellular lysis. His-tagged proteins bound to their cognate chaperones will be isolated by passage through a nickel column and putative chaperones will be isolated and analyzed by mass spectrometry. To confirm binding, putative chaperones will be hemagglutinin(HA)-tagged and expressed concurrently with His-tagged effector proteins. Cells will then be lysed and chaperone-effector complexes will be isolated by passage through an anti-HA column. Lysate and eluted proteins will be immunoblotted to detect the presence of both the HA-tagged chaperone and His-tagged effector protein following elution. To identify the export sequence, a series of effector protein truncations containing a C-terminal epitope tag comprising the Bordetella pertussis adenylate cyclase toxin (CyaA) will be generated in V. parahaemolyticus using homologous recombination. Following T3SS induction, the cell-free supernatant will be immunoblotted for presence of the CyaA-tagged protein constructs. Truncation to the point at which secretion is eliminated will identify the functional components of the export sequence. To identify the chaperone-binding domain, HA-tagged chaperones will be bound to an anti-HA column. A series of CyaA-tagged truncated effectors will then be applied to the anti-HA column. Protein complexes will be eluted and immunoblotted for presence of the CyaA-tag to determine the functional limits of the effector's chaperone-binding domain. To determine the role of the export sequence and chaperone-binding domain on secretion and T3SS specificity, four constructs will be created using homologous recombination: wild-type, export sequence deletion, chaperone-binding domain deletion, and catalytic domain deletion, each incorporating a C-terminal CyaA-tag. These constructs will be generated in wild-type strain NY-4 and strains with deletions of T3SS1, T3SS2 and T3SS1/2 and expressed under T3SS inducing conditions. Cell-free supernatant for each strain containing each construct will be probed to detect their secretion. To assess the involvement of these signal motifs on effector translocation, the four constructs in wild-type NY-4 will be incubated with HeLa cells. Translocation of CyaA into eukaryotic cells results in conversion of ATP to cAMP, which is measured using a commercial enzyme immunoassay. The signals responsible for effector protein specificity will be demonstrated by signal exchange between T3SS1- and T3SS2-specific effectors. Effectors containing exchanged signals will be expressed under T3SS inducing conditions in wild-type strain NY-4 and T3SS1, T3SS2 and T3SS1/2 mutants and immunoblotted to assess redirection of effector transport. Assessment of instruction in Dr. Shah's Bacteriology course will be performed by student evaluations, interactions with students and other course instructors and evaluation by Dr. Shah. Assessment of summer students will be determined by weekly meetings, interactions with Dr. Call and myself and evaluation of their laboratory techniques and writing.

Progress 09/01/11 to 08/31/13

Outputs
Target Audience: Target audiences include the general scientific community as well as faculty, staff and students of Washington State University. Efforts include presentation of scientific results through regularly scheduled research in progress seminars (most recent 10/23/12), poster sessions (most recent 4/26/13) and publication in peer-reviewed journals, as well as delivery of lectures to undergraduates enrolled in "Earth's History and Evolution" and laboratory instruction to 2nd year veterinary students enrolled in "Veterinary Bacteriology and Mycology". The data obtained in this study has been prepared as a scientific manuscript and has been submitted for publication in Frontiers in Cellular and Infection Microbiology, where it is currently in review. An abstract has also been submitted for presentation at the VIBRIO 2014 meeting in Edinburgh, Scotland, where results may be disseminated to attendees by presentation or poster display. Changes/Problems: The original approach for this project was largely published by Akeda et al, 2011. Identification of the Vibrio parahaemolyticus type III secretion system 2-associated chaperone VocC for the T3SS2-specific effector VopC. FEMS Microbiology Letters 324(2):156-64. Our approach for virulence factor discovery in Vibrio parahaemolyticus was subsequently altered to use RNA-seq for comparative transcriptomics between expression conditions of type III secretion system 1 (T3SS1). This approach allowed us to capitalize on the availability of advanced sequencing technology to examine the pathogen on a global expression scale and conduct a more thorough analysis for as yet unidentified factors involved in T3SS1-related pathogenesis of V. parahaemolyticus. What opportunities for training and professional development has the project provided? I gained significant experience in experimental design and data analysis, particularly with regard to obtaining,analyzing and performing quality control onlarge data sets associated with RNA-seq and current sequencing technology. I also gained experience in manuscript preparation and dissemination of information regarding large scale data sets, which offers several unique challenges. I served as a teaching assistant inDr. Devendra Shah's"Veterinary Bacteriology and Mycology"course for 2nd year veterinary students at Washington State University in the fall semester of 2011 and 2012. This allowed me the opportunity to gain valuable teaching experience by assisting in the training of DVM students in microbiology associated laboratory techniques, delivering lectures, preparing laboratory materials, and assessing and evaluating student examinations. I have also lectured on "Evolution, Speciation and Natural Selection" for an undergraduate "Earth's History and Evolution" class forfour semesters to date (Fall 2011, Spring/Fall 2012 and Fall 2013). How have the results been disseminated to communities of interest? The data obtained in this study has been prepared as a scientific manuscript and has been submitted for publication in Frontiers in Cellular and Infection Microbiology, where it is currently in review. An abstract has also been submitted for presentation at the VIBRIO 2014 meeting in Edinburgh, Scotland, where results may be disseminated to attendees by presentation or poster display. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? RNA-seq was utilized to obtain global transcriptome patterns ofVibrio parahaemolyticusunder conditions that either induce (growth in DMEM media, in trans expression of transcriptional regulator exsA) or repress T3SS1 expression (growth in LB-S media, in trans exsD expression) and during infection of HeLa cells over time in a minimal media (Hank's Balanced Salt Solution). Comparative transcriptomic analysis demonstrated that growth in DMEMyielded amore metabolically active expression profile that includedseveral highly expressed genes putatively associated with iron acquisition, while the in trans exsA expression profile showed high upregulation of T3SS1 associated genes.We also identified13 genes not currently associated with T3SS1 that were commonly upregulated in both the DMEM and exsA expression conditions for potential further study. Transcriptional data obtained fromV. parahaemolyticus infection of HeLa cells was used tocharacterizethe expression patterns of several T3SS1 associated genes, including those encoding for structural proteins, effector proteins, translocators, chaperonesand regulators. Additionally, an overall expression profile of V. parahaemolyticus during HeLa cell infection was constructed, which suggested that transport and metabolism of inorganic ions, most notably iron,peaked early in infection while nitrate and amino acid transport and metabolismcame to predominateshortly thereafter and that several of these genescontinued to be upregulatedthrough the end of infection.Comparative expression analysis also identified 21 genes currently not associated with T3SS1 that were upregulated continuously through at least 6 hours post-infection, and are candidates for further study to determine their roles in T3SS1 related virulence.

Publications

  • Type: Journal Articles Status: Under Review Year Published: 2014 Citation: Nydam, SD, DH Shah, and DR Call. Transcriptome analysis of type III secretion system 1 in Vibrio parahaemolyticus. [In Review]


Progress 09/01/11 to 08/31/12

Outputs
OUTPUTS: Comparative transcriptomic analysis of inducing and repressive conditions affecting type III secretion system 1 in Vibrio parahaemolyticus has been completed and detailed experiments on the results are currently underway. A research in progress seminar discussing the current results of this project was presented to Washington State University's department of Veterinary Microbiology and Pathology on 2/7/12 and a poster was displayed at Washington State University's Academic Showcase on 3/30/12. This is the second year in which I have assisted in Dr. Devendra Shah's "Veterinary Bacteriology and Mycology" course for 2nd year veterinary students, in which I assist during the laboratory sessions and grade exams. This year I have also been given the opportunity to lecture and prepare materials for one of the laboratory sessions. I have also lectured on "Evolution, Speciation and Natural Selection" for an undergraduate "Earth's History and Evolution" class for two consecutive semesters to date (Fall 2011, Spring 2012). PARTICIPANTS: Seth Nydam (PI): Conducts experiments and analysis of results, preparation of manuscripts and presentations for dissemination of information. Assists in teaching duties of Dr. Shah's "Veterinary Bacteriology and Mycology" course. Douglas Call: Provides oversight and advice regarding experimental design and analysis. Edits and revises written and presented material as necessary. Washington State University: Provides facilities for conducting scientific experiments, analysis of results, and presentation of data to faculty, staff and students. TARGET AUDIENCES: Target audiences include the general scientific community as well as faculty, staff and students of Washington State University. Efforts include presentation of scientific results through regularly scheduled research in progress seminars (most recent 2/7/12), poster sessions (most recent 3/30/12) and publication in peer-reviewed journals, as well as delivery of lectures to undergraduates enrolled in "Earth's History and Evolution" and laboratory instruction to 2nd year veterinary students enrolled in "Veterinary Bacteriology and Mycology". PROJECT MODIFICATIONS: The original approach for this project was largely published by Akeda et al, 2011. Identification of the Vibrio parahaemolyticus type III secretion system 2-associated chaperone VocC for the T3SS2-specific effector VopC. FEMS Microbiology Letters 324(2):156-64. Our approach for virulence factor discovery in Vibrio parahaemolyticus was subsequently altered to use deep sequencing by Illumina technology for comparative transcriptomics between different expression conditions of type III secretion system 1. This approach utilizes more advanced technology to examine the pathogen on a global expression scale and conduct a more thorough analysis for as yet unidentified virulence components involved in the pathogenesis of Vibrio parahaemolyticus.

Impacts
Comparative transciptomic analysis has identified genes within and outside of the Vibrio parahaemolyticus pathogenicity islands on both chromosomes with increased expression under type III secretion system 1 inducing conditions in conjunction with as well as independent of a known transcriptional regulator. This data set is being explored with continued in vitro experiments aimed towards identifying and characterizing additional factors that influence, regulate and are utilized by type III secretion system 1. Manuscripts detailing this work are in progress and intended to culminate in publication and a completed PhD dissertation, with a final defense projected for May of 2013.

Publications

  • Erwin, DP, SD Nydam, and DR Call. 2012. Vibrio parahaemolyticus ExsE is requisite for initial adhesion and subsequent type III secretion system 1-dependent autophagy in HeLa cells. Microbiology 158(Pt 9):2303-2314.
  • Zhou, X, SD Nydam, JE Christensen, ME Konkel, L Orfe, P Friel, and DR Call. 2012. Identification of Potential Type III Secretion Proteins via Heterologous Expression of Vibrio parahaemolyticus DNA. Applied and Environmental Microbiology 78(9):3492-3494.