Source: VANDERBILT UNIVERSITY submitted to
THE POPULATION GENOMICS OF AN INVASIVE SPECIES IN ITS NATIVE AND INTRODUCED RANGES
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
EXTENDED
Funding Source
Reporting Frequency
Annual
Accession No.
0192607
Grant No.
2002-35320-12174
Project No.
TENR-2--2-02213
Proposal No.
2002-02213
Multistate No.
(N/A)
Program Code
51.9
Project Start Date
Aug 1, 2002
Project End Date
Jul 31, 2006
Grant Year
2002
Project Director
McCauley, D. E.
Recipient Organization
VANDERBILT UNIVERSITY
(N/A)
NASHVILLE,TN 37235
Performing Department
(N/A)
Non Technical Summary
This project compares the genetic composition of Silene vulgaris in its introduced range in North America and in its native range in Europe. Comparisons of the population genetics of an invasive plant between the introduced and native ranges can be useful for two reasons. First, the genotypes found in the introduced range could be restricted to a certain portion of the native range, indicating the geographic source of the introduction. Second, changes in the genetic composition of the species following the introduction could enhance invasiveness. Plants collected from numerous locations in North America and Europe will be used in two studies. First, DNA extracted from those plants will be examined using genetic markers in the chloroplast and nuclear DNA. Populations will be characterized by the specific genotypes they contain. Populations from different parts of the introduced range will be compared for genetic similarity in order to identify any geographic divergence that has occurred since the original introduction. Populations from the introduced range will be compared with those from Europe in order to identify whether the introduction can be traced to any European point sources, and to compare levels of genetic diversity. In a second study, greenhouse crosses will be conducted between plants from different locations in North America and between North American and European plants. Patterns of viability in the offspring will assist in the interpretation of the relationship between genetic divergence as indicated by the DNA studies, and its consequences for invasiveness.
Animal Health Component
(N/A)
Research Effort Categories
Basic
50%
Applied
50%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2012300107033%
2012300108034%
2012300114033%
Goals / Objectives
Evaluate geographic patterns of genetic diversity in Silene vulgaris, a weedy invasive plant, using chloroplast DNA and nuclear microsatellite genetic markers. Partition total genetic diversity into within and among population components within North America and within and among population components within Europe. Compare the genetic composition of North American and European populations in order to infer European sources of North American populations and evaluate any genetic changes that may have accompanied the spread of S. vulgaris across its North American range. Conduct greenhouse crosses within and among North American and European S. vulgaris populations in order to evaluate the relative influences of inbreeding depression and local adaptation on vigor and invasive potential. Combine the results of the genetic marker and crossing studies in order to evaluate how population genetic processes influence the establishment and spread of invasive plants.
Project Methods
Seed collections will be made from numerous North American and European populations of Silene vulgaris in the summers of 2002 & 2003. Chloroplast DNA (cpDNA) haplotype diversity will be assayed by using published PCR primers to amplify non-coding regions of the chloroplast genome of these plants. Size and restriction site variation will be determined by electrophoresis following restriction digests of the PCR products. Representatives of all cpDNA haplotypes will be sequenced using an ABI automated DNA sequencer. Microsatellite genetic markers will be based on PCR primers developed previously for S. alba and will be scored on ABI 377 and MJ Research Base Station automated DNA sequencers. Partitioning of genetic diversity within and among populations will be accomplished using analysis of molecular variation (AMOVA) statistical methods, which combine frequency and phylogenetic information. The genetic composition of North American and European populations will be compared with regard to absolute amounts of genetic diversity, level of geographic structure, and similarity of non-random associations among genotypes. Comparisons of genetic structure between continents based on F-statistics and covariance matrices will use bootstrapping statistical methods. Greenhouse crosses within and among populations will use an experimental design similar to the Line Cross method. Crosses will be conducted among populations separated by spatial scales ranging from several km to separate continents. F1 and F2 offspring will be assayed for seed germination and seedling to adult survivorship. Comparison of within and among population cross treatments will utilize ANOVA and other statistical methods in order to test for the effects of heterosis (i.e.F1 offspring from among-populations crosses are the most fit) and outbreeding depression (i.e. F2 offspring from among-population crosses are the least fit). The effect of spatial scale on heterosis and outbreeding depression will also be detected by this analysis.

Progress 10/01/03 to 09/30/04

Outputs
Chloroplast DNA (cpDNA) studies based on PCR/RFLP data have shown that North American Silene vulgaris populations are highly structured at the level of local populations and moderately structured among geographic regions. Further, pooling information from North American populations results in a measure of genetic diversity comparable to that found previously in Europe, suggesting multiple introductions to multiple localities. A companion study based on cpDNA sequencing of select individuals from North America and Europe has shown only modest regional geographic structuring in Europe, and that North American sequences can be found throughout a phylogenetic tree based on European cpDNA sequences. This again suggests multiple introductions from Europe to North America. Studies of the geographic structure of nuclear genes to date have been based on AFLP markers. Preliminary results suggest a nuclear population structure in Europe not seen in the cpDNA data. North American multi-locus AFLP genotypes can be found throughout a neighbor joining tree created with European AFLP genotypes, once again suggesting multiple introductions to North America. Microsatellite nuclear genetic markers have been developed in anticipation of further studies of cyto-nuclear genetic structure. To date crossing studies have focused on crosses within and between North American populations. The major result is that crosses between some North American populations generate F1 offspring whose survivorship is significantly higher than is found in either parental population. Crosses between other combinations of populations result in F1 progeny with significantly reduced survivorship. Thus, there is evidence that gene flow could result in either heterosis or outbreeding depression, depending on which populations are involved. One notable result was that offspring of Giles County, VA plants who were crossed with individuals from any other region in the study display heterosis, suggesting that inbreeding depression is a general property of the Virginia plants. One would predict that gene flow into the Virginia populations could increase their invasiveness. It was also shown that when these long distance outcross individuals are self-fertilized their offspring exhibit reduced inbreeding depression, when compared to the progeny of individuals outcrossed within their local population and then self-fertilized. Differently put, the advantage to gene flow persists beyond the first generation. A second result from the cross experiment was that long distance crosses increase the proportion of hermaphrodite offspring. S. vulgaris is gynodioecious with cyto-nuclear sex determination, and a change in offspring sex with outcrossing distance was considered to be an indication of the effect of population structure on cyto-nuclear interactions. The study of European populations was delayed by extreme heat and drought in Europe in the summer of 2003, which limited the opportunity for collecting the necessary seeds. European seed collection in the summer of 2004 was very successful, however, and these studies are now proceeding well, as indicated above.

Impacts
Management strategies of invasive species depend on knowledge of population dynamics and population history. Studies of the geographic structure of genetic diversity in the native and introduced ranges can provide insight into the history of the invasion (e.g. one or multiple introductions into one or multiple sights) that can, in turn, demonstrate how population genetic processes influence invasion success. Crosses between plants from diverse locations can illustrate the degree to which the invasive species has undergone local adaptation or, conversely, suffers from inbreeding depression. Local adaptation implies that a management strategy must be tailored to local circumstances. Populations suffering from inbreeding depression could become considerably more aggressive, should conditions come to favor increased rates of gene flow. The results of this project have illustrated both the North American population structure of Silene vulgaris in the context of its structure in Europe, and the consequences of gene flow among geographic populations.

Publications

  • McCauley, DE, RA Smith, JD Lisenby, C Hsieh. 2003. The hierarchical spatial distribution of chloroplast DNA polymorphism across the introduced range of Silene vulgaris. Molecular Ecology 12: 3227-3235.
  • Bailey, M.F. and D.E. McCauley. 2005 Offspring sex ratio under inbreeding and outbreeding in a gynodioecious plant. Evolution (in press)


Progress 10/01/02 to 09/30/03

Outputs
Plant material for DNA extraction was collected from 56 North American Silene vulgaris populations ranging from Ontario to Virginia. Local populations were clustered into nine geographic regions. A survey of chloroplast DNA diversity identified 19 haplotypes distinguished by the PCR/RFLP method. Haplotype diversity was partitioned statistically into the following hierarchical components: among regions, among populations within regions, and among individuals within populations. The significant among region component, coupled with a lack of isolation by distance, suggests that S. vulgaris was introduced to North America in multiple episodes to different localities, and that subsequent gene flow by seed has not been sufficient to eradicate the genetic signature of these introductions. A large among population within region component suggests that recent patch dynamics drive local population structure. Comparison of total haplotype diversity across North American populations to haplotype diversity calculated from previous studies of S. vulgaris chloroplast DNA in Europe suggests that the introduction of S. vulgaris to North America did not involve a severe population bottleneck. Additional studies of chloroplast DNA haplotype diversity and geographic structure in Europe are underway. Greenhouse crosses within and among North American populations were initiated to study the effects of mating system and population structure on viability. Cross treatments included self-fertilization, outcrossing with another individual from the same population, outcrossing with an individual from a nearby population, and outcrossing with an individual from a different geographic region. This is a two generation experiment. The F1 generation is complete with the following results. Self-fertilization reduces seed viability and post germination survivorship greatly, when compared to outcrossing within populations. Viability is increased further by outcrossing among local populations and by outcrossing among regions. An interaction between geographic region of origin and cross treatment demonstrates that the magnitude of these effects is region dependent. Offspring gender was also noted. Self-fertilization produced a greater proportion of female offspring (vs. hermaphrodites) than did outcrossing within populations. The proportion of hermaphrodite offspring increased further with longer distance outcrossing though again there was a region x cross treatment interaction. The results of the cross experiment suggest that the viability of local populations depends in part on their ability to retain and accumulate genetic diversity. The fact that different geographic regions differ in their response to inbreeding/outbreeding suggests that the effects of genetic structure on viability depend in part on local history. Since one intent of the experiment was to distinguish between dominance and epistatic genetic effects on fitness, complete interpretation of the results depends data from the second generation (F2). The F2 crosses are underway. Crosses among European populations and between European and North American populations will be initiated in Spring, 2004.

Impacts
Management stategies of invasive species depend on knowledge of population dynamics and population history. Studies of the geographic distribution of genetic diversity will provide information on the history and genetic consequences of the spread of the study species from Europe to North America. Crossing studies will indicate whether the persistence and vigor of natural populations is influenced by the magnitude of genetic variation within them, and whether this varies geographically across the range of the study species.

Publications

  • McCauley D.E., Smith R.A., Lisenby J.D. and Hsieh, C. 2003. The hierarchical spatial distribution of chloroplast DNA polymorphism across the introduced range of Silene vulgaris. Molecular Ecology 12: 3227-3235.