Source: UNIVERSITY OF CALIFORNIA, DAVIS submitted to
HEPATITIS E VIRUS (HEV) PREVALENCE AND RISK FACTORS IN PASTURE-RAISED PIGS IN CALIFORNIA
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
1018595
Grant No.
(N/A)
Project No.
CA CALV-AH-385
Proposal No.
(N/A)
Multistate No.
(N/A)
Program Code
(N/A)
Project Start Date
Jan 31, 2019
Project End Date
Jul 30, 2019
Grant Year
(N/A)
Project Director
de Andrade e Pires, AL, F.
Recipient Organization
UNIVERSITY OF CALIFORNIA, DAVIS
410 MRAK HALL
DAVIS,CA 95616-8671
Performing Department
Population Health & Reproduction
Non Technical Summary
The growing niche of pastured pork farms reflects consumer demand for local, sustainable, high-quality, "humanely" raised meat. One of the obvious challenges of raising pigs outdoors is the increased likelihood of domestic swine interfacing with wildlife, including feral pigs, and a corresponding increasing risk of disease transmission between the two populations. Feral pigs are an invasive species in the U.S. and their expanding population creates negative impacts on agriculture crops, ecosystems and native wildlife. Feral pigs also serve as a reservoir for many zoonotic diseases and pathogens that can infect livestock and humans (e.g., Shiga toxin-producing Escherichia coli (STEC), Pseudorabies, Brucella suis, and Hepatitis E virus (HEV)). Despite multiple control efforts, California has one of the highest and widest distributions of feral pigs.. The two parallel trends of an expanding feral pig population and a growing interest in pasture-raised pork creates a possible disease transmission link between existing pathogens harbored in feral pigs and humans. No studies have surveyed HEV prevalence in pasture-raised pig systems or feral swine populations in CA. The overall research objective is to fill a critical information gap regarding the epidemiology of HEV in pasture-raised and feral pigs in California. The results of this project will provide valuable information to researchers, stakeholders and consumers regarding the overall food safety risks associated with this type of pasture-raised pig system. In addition, we will create a multi-disciplinary outreach program to address the public health and food safety concerns in these systems.
Animal Health Component
100%
Research Effort Categories
Basic
(N/A)
Applied
100%
Developmental
0%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
3073510117050%
3110830110150%
Goals / Objectives
The overall research objective is to fill a critical information gap regarding the epidemiology of Hepatitis E virus (HEV) in pasture-raised and feral pigs in California. The specific objectives are: 1) To estimate HEV prevalence in pasture-raised pigs and feral pigs; 2) To identifyrisk factors associated with the interface of pasture-raised pigs and feral pigs; and 3) To develop UC CE-VME outreach capabilities.
Project Methods
A cross-sectional study will be conducted with pasture-raised pig farms located in three regions of Northern California and Central Coast. These areas were selected due to the proximity to the University, recent growth of pasture-raised pig farms in these counties near Bay Area markets, proximity or contact with feral pigs, and participation in an on-going projects. The inclusion criteria include: 1) farm incorporates a pasture-raised pig? system; 2) small to medium-sized farm; 3) farm interfaces with feral pigs; and 4) willingness to participate. A cross-sectional study will be conducted on 15 pasture-raised pig farms (114 individual domestic pigs and 36 individual feral pigs). Within each region, five farms will be identified and a stratified proportional sampling will be conducted (6, 12, or 19 individual samples per farm, depending on the total animals: 25, 50 or 350 pigs). Two approaches will be conducted in order to collect feral pig samples in the surrounding areas of the enrolled farms. 1) fecal samples obtained by hunters or landowner depredation and 2) samples collected by USDA APHIS WS during their statewide comprehensive feral swine surveillance effort will be shared with this project. A sampling kit will be sent to farmers, hunters and landowners. All samples will be processed for viral RNA detection using real-time reverse transcriptase PCR for HEV in the DiCaprio laboratory using standard methods. A questionnaire will include the following topics: 1) demographics, 2) management practices, 3) animal health and disease prevention, 4) biosecurity, and 5) environmental factors. The prevalence (overall and as stratified prevalence by sampling period, farm type and county) will be estimated using Bayesian methods. The association between potential risk factors and HEV prevalence will be calculated using generalized linear mixed models.

Progress 01/31/19 to 07/30/19

Outputs
Target Audience:Small to medium-sized farms, pasture-raised pig farms located in three regions of Northern California and Central Coast, interface with feral pigs. These areas were selected due to the proximity to the University, recent growth of pasture-raised pig farms in these counties near Bay Area markets, proximity or contact with feral. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project provided support for graduate research, thus helping to build capacity for future professionals in epidemiology, animal health and food safety. Dr Pires mentored a a PhD student and Dr. DiCaprio master's student. This project was part of the master's student thesis. How have the results been disseminated to communities of interest?The results have been disseminated through outreach activities involving farmers, extension specialists and farm advisors working with integrated crop-livestock farms. They were reached as part of the workshops, field days and informal education activities. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? A cross-sectional study was conducted with pasture-raised pig farms located in three regions of Northern California and Central Coast. Fecal specimens from outdoor-raised and feral swine were screened for the presence of HEV RNA. In total, 140 fecal samples were collected from outdoor-raised pigs on 11 California farms and 32 fecal samples from feral pigs. No feral pig fecal samples tested positive for HEV. Overall prevalence in domestic pigs was 0.7% (1/139), with a farm level prevalence of 9.1% (1/11). These results indicate a low prevalence of HEV among outdoor-raised pigs and feral swine in California.

Publications

  • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Harrison L, Patterson L, Wu X#, Pires A, DiCaprio E. 2019. Prevalence of Hepatitis E virus in outdoor-raised and feral pig fecal samples in Northern California. ASM Microbe 2019, San Francisco, CA, June 20-24, 2019