Source: TEXAS A&M UNIVERSITY submitted to NRP
INVESTIGATING BIOLOGICAL NITRIFICATION INHIBITION (BNI) IN SORGHUM
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
1015760
Grant No.
2018-67030-28133
Cumulative Award Amt.
$100,000.00
Proposal No.
2017-09277
Multistate No.
(N/A)
Project Start Date
Jun 1, 2018
Project End Date
May 31, 2021
Grant Year
2018
Program Code
[A1801]- Exploratory: Exploratory Research
Recipient Organization
TEXAS A&M UNIVERSITY
750 AGRONOMY RD STE 2701
COLLEGE STATION,TX 77843-0001
Performing Department
Soil & Crop Sciences
Non Technical Summary
Investigating low-nitrifying sustainable farming systems is essential as current agriculture accounts for approximately 79% of total anthropogenic emissions of nitrous oxide in the U.S. Some plants can suppress nitrification by releasing nitrification inbibitors from its roots (biological nitrification inhibition or BNI).Exploiting the BNI activity of crops could be an effective and innovative strategy for developing long-term solutions for improving environmental sustainability of agricultural practices in the US. This project proposes to identify sorghum (Sorghum bicolor) genotypes with nitrification inhibition property which could potentially revolutionize the sorghum breeding program and contribute to options for improving nitrogen use efficiency (NUE), water quality and overall agricultural sustainability.In this exploratory grant project, we are teaming up with researchers from the Japan International Research Center for Agricultural Sciences (JIRCAS) and theInternational Center for Tropical Agriculture (CIAT) in Cali, Colombia to investigate the BNI properties and potential reductions in greenhouse gas (GHG) emissions associated with sorghum grown in the US.
Animal Health Component
10%
Research Effort Categories
Basic
60%
Applied
10%
Developmental
30%
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
1021520107050%
1021520102050%
Goals / Objectives
The primary goal of this exploratory research grant proposal is to conduct preliminary studies investigating BNIproperties in sorghum. We have two specific objectives: Objective 1: Screen sorghum cultivars from the Texas A&M Sorghum Breeding Program for hydrophobic and hydrophilic BNI activity comparing to BNI positive and negative checks. Objective 2: Measure nitrification inhibition from root exudates extracted from BNI positive sorghum cultivars in contrasting soils representing major sorghum production regions in Texas.
Project Methods
Objective 1: Screen sorghum cultivars from the Texas A&M Sorghum Breeding Program for hydrophobic and hydrophilic BNI activity comparing to BNI positive and negative checks.We will screen sorghum genotypesfrom Dr. Bill Rooney's (Co-PI) breeding program at Texas A&M University for BNI properties. Sorghum seeds will be germinated in propagation trays filled with inert germination media. Brachiariahumidicola genotype with known BNI and corn seedlings will be used as positive and negative BNI checks.We will follow the methods described in published literature for extraction of hydrophilic and hydrophobic BNI compounds from root exudates.Objective 2: Measure nitrification inhibition from root exudates extracted from BNI positive sorghum cultivars in soil representing major sorghum production regions in Texas. A nitrification study will be conducted over a 28-day period for soil treated with increasing rates of root exudates or root extracts from sorghum lines and B. humidicola, and soil treated with a commercial nitrification inhibitor (DCD). Sorghum lines will be selected from initial screening based on BNI potential.

Progress 06/01/18 to 05/31/21

Outputs
Target Audience:Targeted audience for the project included agricultural scientists (soil scientists, agronomists, environmental scientists, and hydrologists), extension personnel, and climate change scientists and policy makers. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The projectprovided training and professional development opportunities for one Ph.D. graduate student and one undergradute student. This graduate stduent won second prize instudent poster competition organized by the "Global Climate Change" Community of American Society of Agronomy in 2020. How have the results been disseminated to communities of interest?The results from this project were presented at the ASA-CSSA-SSSA Annual meetings, Texas Plant protection Meeting, andthe Americal Geophysical Union (AGU) annual meeting. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? Objective 1:The PD, Dr. Rajan, screened sorghum seeds from Dr. William Rooney's germplasm collection for BNI compounds at the Japan International Research Center for Agricultural Sciences (JIRCAS) in Tsukuba, Japan. This work was carried out in collaboration Dr. Subbarao, Principal Scientist at JIRCAS. In total, 89 different elite sorghum genotypes and two control genotypes were screened for hydrophobic BNI activity. After eight days of growth in the growth chamber, roots and shoots were excised from sorghum seedlings. Sorghum roots from each replication were immersed in 20 ml dichloromethane(acidified with 1 % acetic acid v/v) and filtered using Whatman No. 2 filter paper after 1 min. The solution was evaporated in a rotary evaporator at 40 degrees. After 3 hours, the residue was re-extracted with 5 ml methanol and evaporated again at 40 degrees. Then, the residue was re-extracted using 5 ml acetonitrile and filtered through a 0.20 µm membrane filter into a glass vial for sorgoleone analysis, a major BNI compound (hydrphobic) in sorghum. Out of the 89 genotypes, we discovered 5 genotypes with high sorgoleone production (above 50 micrograms per plant) and approximately half of the genotypes had sorgoleone production significantly higher than the positive control genotype we used which had medium level sorgoleone production (23 micrograms per plant). A preliminary analysis of our data reveals heritability of this trait in sorghum. Objective 2: We investigated the effect of BNI in four soil types from Texas. These soils were collected from row crop production fields. The study was conducted in the growth chamber and greenhouse. Plants were grown in pipe columns that were filled with soil and packed to achieve the same bulk density as in the field.Six genotypes selected based on objective 1. Two High BNI lines from Texas A&M breeding program, two low BNI lines from Texas A&M breeding program, positive control (High BNI producing genotype), and negative control (soil). Urea and ammonium sulphate were used as the fertilizer sources. Destructive plant and soil sampling was done 50-60 days after emergence. AOB populations from the rhizosphere soil was determined by quantifying DNA. This was followed by a potential nitrification study in the lab by using the Hart el. al. (1994) procedure. Results from the study showed that the positive control (High BNI producing genotype) resulted in the lowest AOB gene count (~ 60% lower than Low BNI lines from Texas). Although, there was a great differences of AOB gene count in sorghum lines, nitrification was relatively similar in three soils which all had soil pH above 7. The differences in nitrification rates were more pronounced in the soil that had the soil pH less than 6. Our results showed that effect of BNI was more pronounced in low pH soil than high pH soil.

Publications

  • Type: Conference Papers and Presentations Status: Published Year Published: 2020 Citation: Phuyal, D., Rajan, N., Rooney, W., Kim, J., Chu, K.H., Subramanian N., Maharjan B., Okumoto, S., Schnell, R., Peterson, J.A., and Subbarao, G.V. (2020). Climate smart farming: A preliminary investigation of biological nitrification inhibition (BNI) in selected sorghum genotypes. Abstracts, ASA-CSSA-SSSA International Annual Meetings, 9-13 November, Virtual
  • Type: Conference Papers and Presentations Status: Published Year Published: 2020 Citation: Phuyal, D., Rajan, N., Rooney, W., Kim, J., Chu, K.H., Subramanian N., Maharjan B., Okumoto, S., Schnell, R., Peterson, J.A., & Subbarao, G.V. (2020). Effect of biological nitrification inhibition (BNI) of sorghum on Weswood silt loam soil. Abstracts, Texas Plant Protection Conference, 8 December, Virtual.
  • Type: Other Status: Published Year Published: 2020 Citation: Rajan, N. (2020). Greenhouse gas emissions from grain cropping systems. Soil Critique Meeting at College Station, TX,22 July, Virtual.
  • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Rajan, N., Rooney, W. L., Okumoto, S., Schnell, R., Bagavathiannan, M., Aitkenhead-Peterson, J., Jifon, J., Chu, K., Casey, K. D., & Subbarao, G. V. (2019). Climate smart agriculture: The role of biological nitrification inhibition. Abstracts, ASA-CSSA-SSSA Annual Meetings, 10-13 November, San Antonio, TX.
  • Type: Journal Articles Status: Other Year Published: 2022 Citation: Rajan, N., Okumoto, S., Maharjan, B., Phuyal, D., & Subbarao, G. V. A review on climate smart agriculture opportunities using biological nitrification inhibition. Biology and Fertility of Soils (Special Issue). To be submitted before 30 September.
  • Type: Conference Papers and Presentations Status: Accepted Year Published: 2021 Citation: Phuyal, D., Rajan, N., Rooney, W., Kim, J., Chu, K.H., Subramanian N., Maharjan B., Okumoto, S., Schnell, R., Peterson, J.A., and Subbarao, G.V. (2021). Effect of biological nitrification inhibition of sorghum on soil greenhouse gas emission and nitrification. Abstracts, ASA-CSSA-SSSA International Annual Meetings.
  • Type: Conference Papers and Presentations Status: Accepted Year Published: 2021 Citation: Phuyal, D., Rajan, N., Rooney, W., Kim, J., Chu, K.H., Subramanian N., Maharjan B., Okumoto, S., Schnell, R., Peterson, J.A., and Subbarao, G.V. (2021). Study of soil properties on biological nitrification inhibition of sorghum genotypes. Abstracts, ASA-CSSA-SSSA International Annual Meetings.
  • Type: Conference Papers and Presentations Status: Published Year Published: 2021 Citation: Rajan, N. Nitrous oxide emissions from agricultural soils: Sources and mitigation options. Abstracts, Soil and Water Conservation Society Annual International Conference, 26-28 July, Virtual.
  • Type: Conference Papers and Presentations Status: Published Year Published: 2020 Citation: Rajan, N., Phuyal, D., Maharjan, B., Okumoto, S., Casey, K., Subramanian, N., Aitkenhead-Peterson, J., Bagavathiannan,M., Jifon, J., Rooney, W., Schnell, R., & Subbarao, G. V. (2020). Climate solutions: Biological nitrification inhibition in modern crop varieties. Abstracts, American geophysical Union Fall Meeting, 1-17 December, Virtual.


Progress 06/01/19 to 05/31/20

Outputs
Target Audience:Targeted audience for the project included agricultural scientists (soil scientists, agronomists, environmental scientists, and hydrologists), extension personnel, and climate change scientists and policy makers. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The project provided training and professional development opportunities for one Ph.D. graduate student. How have the results been disseminated to communities of interest?Dr. Rajan presented results from this project at the ASA-CSSA-SSSA Annual meeting and in a local meeting. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? We have started objective 2 research during this period.We investigated the effect of BNI in four soil types from Texas. These soils were collected from row crop production fields. The study was conducted in the growth chamber and greenhouse. Plants were grown in pipe columns that were filled with soil and packed to achieve the same bulk density as in the field. Six genotypes selected based on objective 1. Two High BNI lines from Texas A&M breeding program, two low BNI lines from Texas A&M breeding program, positive control (High BNI producing genotype), and negative control (soil). Urea and ammonium sulphate were used as the fertilizer sources. Destructive plant and soil sampling was done 50-60 days after emergence. AOB populations from the rhizosphere soil was determined by quantifying DNA. This was followed by a potential nitrification study in the lab by using the Hart el. al. (1994) procedure. Results from the study showed that the positive control (High BNI producing genotype) resulted in the lowest AOB gene count (~ 60% lower than Low BNI lines from Texas). Although, there was a great differences of AOB gene count in sorghum lines, nitrification was relatively similar in three soils which all had soil pH above 7. The differences in nitrification rates were more pronounced in the soil that had the soil pH less than 6. Our results showed that effect of BNI was more pronounced in low pH soil than high pH soil.

Publications

  • Type: Conference Papers and Presentations Status: Published Year Published: 2019 Citation: Rajan, N., Rooney, W. L., Okumoto, S., Schnell, R., Bagavathiannan, M., Aitkenhead-Peterson, J., Jifon, J., Chu, K., Casey, K. D., & Subbarao, G. V. (2019). Climate smart agriculture: The role of biological nitrification inhibition. Abstracts, ASA-CSSA-SSSA Annual Meetings, 10-13 November, San Antonio, TX.
  • Type: Other Status: Published Year Published: 2020 Citation: Rajan, N. (2020). Greenhouse gas emissions from grain cropping systems. Soil Critique Meeting at College Station, TX, 22 July, Virtual


Progress 06/01/18 to 05/31/19

Outputs
Target Audience:Targeted audience of this project during the first year included the scientific community. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?This project provided training opportunities for one undergraduate student. How have the results been disseminated to communities of interest?The results from this project will be presented at theASA-CSSA-SSSA Annual meeting and Americal Geophysical Union (AGU) annual meeting this year. What do you plan to do during the next reporting period to accomplish the goals?Currently the PD is continuing the sorgoleone (hydrophobic BNI activity) screening work at JIRCAS. She will repeat the hydrophobic BNI experiment with 10 high and 10 low sorgoleone genotypes to confirm the results. She will also do a hydroponics experiment with two high and one low sorgoleone producing genotypes for hydrophilic BNI activity. Work is also planned to carry out soil nitrification inhibition studies usingroot exudates extracted from BNI positive sorghum cultivars. This work will be carried out at Dr. Rajan's laboratory at Texas A&M.

Impacts
What was accomplished under these goals? The PD, Dr. Rajan, screened sorghum seeds from Dr. William Rooney's germplasm collection for BNI compounds at the Japan International Research Center for Agricultural Sciences (JIRCAS) in Tsukuba, Japan. This work was carried out in collaboration Dr. Subbarao, Principal Scientist at JIRCAS. In total, 89 different elite sorghum genotypes and two control genotypes were screened for hydrophobic BNI activity. After eight days of growth in the growth chamber, roots and shoots were excised from sorghum seedlings. Sorghum roots from each replication were immersed in 20 ml dichloromethane (acidified with 1 % acetic acid v/v) and filtered using Whatman No. 2 filter paper after 1 min. The solution was evaporated in a rotary evaporator at 40 degrees. After 3 hours, the residue was re-extracted with 5 ml methanol and evaporated again at 40 degrees. Then, the residue was re-extracted using 5 ml acetonitrile and filtered through a 0.20 µm membrane filter into a glass vial for sorgoleone analysis, a major BNI compound (hydrphobic) in sorghum. Out of the 89 genotypes, we discovered 5 genotypes with high sorgoleone production (above 50 micrograms per plant) and approximately half of the genotypes had sorgoleone production significantly higher than the positive control genotype we used which had medium level sorgoleone production (23 micrograms per plant). A preliminary analysis of our data reveals heritability of this trait in sorghum.

Publications

  • Type: Conference Papers and Presentations Status: Submitted Year Published: 2019 Citation: Rajan, N., W. Rooney, S. Okumoto, R. Schnell, M. Bagavathiannan, J. Aitkenhead-Peterson, J. Jifon, K. Chu, K. D. Casey and G. V. Subbarao. Climate Smart Agriculture: The Role of Biological Nitrification Inhibition. ASA-SSSA-CSSA International Annual Meetings, November 10-13, San Antonio, Texas, USA.