Source: NORTH CAROLINA A&T STATE UNIV submitted to
PROTEOMICS INSTRUMENTATION MEETS EDUCATION (PRIME) AT NORTH CAROLINA A&T STATE UNIVERSITY
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
COMPLETE
Funding Source
Reporting Frequency
Annual
Accession No.
0226949
Grant No.
2011-38821-30967
Cumulative Award Amt.
$149,910.00
Proposal No.
2011-02476
Multistate No.
(N/A)
Project Start Date
Sep 1, 2011
Project End Date
Aug 31, 2015
Grant Year
2011
Program Code
[EP]- Teaching Project
Project Director
Waterman, J.
Recipient Organization
NORTH CAROLINA A&T STATE UNIV
1601 EAST MARKET STREET
GREENSBORO,NC 27411
Performing Department
Animal Sciences
Non Technical Summary
Proteomics is a field of study capable of studying complex mixtures of proteins from plants, animals or microbes allowing the expansion of our knowledge of concepts ranging from normal physiological to disease processes. This field is having an impact on agricultural and food sciences by revolutionizing the manner in which researchers approach scientific questions. It is critical to ensure that minority students are effectively trained in this cutting edge discipline. The goal of this proposal is to establish a proteomics laboratory and provide hands-on training opportunities for students, staff, and faculty at North Carolina A&T State University. The teaching capabilities of NC A&T will be greatly enhanced by having the infrastructure, expertise and techniques in place to properly train a new generation of individuals that will be competitive nationally and globally. By offering proteomics training opportunities for students, this project will diversify the workforce by equipping minority students with experience in a premier field of research. This initiative will impact the food and agricultural sciences higher education system by training minority students in proteomics and making them more competitive for employment opportunities. The training of technical staff and faculty will build a stable, critical mass of expertise which will ensure long-term proteomics capacity for the university; thus providing a foundation for continued proteomics training at NC A&T.
Animal Health Component
100%
Research Effort Categories
Basic
(N/A)
Applied
100%
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
90360993020100%
Goals / Objectives
Proteomics is a field of study capable of qualitatively and quantitatively deciphering complex biochemical mixtures allowing the expansion of our knowledge of concepts ranging from basic biological processes to multivariate diseases. This field is having an impact on agricultural and food sciences by revolutionizing the manner in which researchers approach scientific questions. It is critical to ensure that minority students are effectively trained in this cutting edge discipline. The goal of this proposal is to establish a proteomics laboratory and provide hands-on training opportunities for students, staff, and faculty at North Carolina A&T State University. The teaching capabilities of NC A&T will be greatly enhanced by having the infrastructure, expertise and techniques in place to properly train a new generation of individuals that will be competitive nationally and globally. By offering proteomics training opportunities for students, this project will diversify the workforce by equipping minority students with experience in a premier field of research. This initiative will impact the food and agricultural sciences higher education system by training minority students in proteomics and making them more competitive for employment opportunities. The training of technical staff and faculty will build a stable, critical mass of expertise which will ensure long-term proteomics capacity for the university; thus providing a foundation for continued proteomics training at NC A&T. The objectives are: Objective 1: Establish a proteomics laboratory at North Carolina A&T State University. Our goal is to enhance the educational infrastructure at NC A&T by acquiring proteomics-related equipment and establishing a functional training laboratory. Objective 2: Provide hands-on proteomics training and research opportunities for NC A&T faculty, staff, and students. Our goal is to establish proteomics expertise at NC A&T.
Project Methods
Methodology/Design: We will first establish a proteomics laboratory, which will be under the direction of the PI (Waterman), by acquiring essential pieces of equipment for proteomics scale experiments. Further, the proposed pilot research study will allow at least one graduate student the opportunity to conduct proteomics-focused thesis research. This will ensure that protocols and techniques are reproducible prior to releasing them to the entire NC A&T community. Proteomics modules will be taught in relevant laboratory courses. Proteomics workshop/training material will be developed to provide campus-wide training opportunities to students and researchers in the agricultural and life sciences.

Progress 09/01/11 to 08/31/15

Outputs
Target Audience:The primary target audience was undergraduate and graduate students in the disciplines of agricultural, environmental and life sciences at North Carolina A&T State University.We were also interested in targeting teaching and research faculty, and staff so that the knowledge gained will be transferred to students for years to come. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?The PD participated in an hands-on proteomics workshop. The PD then developed course materials and assisted faculty with implementation into their course work. Then, faculty had the oppportunity to participate in hands on training with the proteomics instruments acquired via this project. Graduate students, through thesis projects,assisted with development of protein isolation, quantitation and analysis protocols. How have the results been disseminated to communities of interest?These activities have been shared through conference papers, presentations and seminars. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? This project accomplished three major goals: 1) Acquisition basic proteomics equipment for gel based applications and establishement of a lab in the Department of Animal Sciences; 2) Development of educational materials for implemention into relevant courses; 3) training and professional development opportunities for students (via courses)and faculty and staff members at N.C. A&T State University.

Publications


    Progress 09/01/13 to 08/31/14

    Outputs
    Target Audience:The target audience was mainly undergraduate and graduate students in the disciplines of agriculture, environmental and life sciences at North Carolina A&T State University. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided?Over the life of this award (2011-2015) there have been numerous training and professional development activities and events associated with this project. For example, there have been hands-on trainingsand experiential learning activities (30); course lectures (9); seminars (10); conference presentations/participations (35); and professional development events (3) which have enhanced proteomics knowledge and skills of faculty and students at the undergraduate and graduate level. How have the results been disseminated to communities of interest?Project participants have sponsored workshops, hands-on training events/activities, proteomics lab tours to visitors (e.g., prospective students, community organizations including K-12 students and youth organizations). Community engagement activities (e.g., lab tours, conferences, recruitment tours, seminars, educational forums and field days) provided platforms to share training opportunities and learning outcomes. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

    Impacts
    What was accomplished under these goals? Resources from NIFA were leveraged to address the lack of proteomics instrumentation and resources at N.C. A&T State University. Three major outcomes have resulted from this project: 1)a proteomics laboratory was established at North Carolina A&T State University in 2012; 2) hands-on training and lecture modules were developed; 3) undergraduate and graduate students, faculty, and researchers participated in proteomics-focused educational and/or research activities as part of this project. There were a number of proteomics project related lectures, seminars/presentations, training activities totaling 91 events over a four year period (2011-2015). This project impacted a total of 1,371 people -- consisting of undergraduate and graduate students, professors, scientists/researchers and community members - by providing access to proteomics expertise, instrumentation and knowledge.

    Publications

    • Type: Conference Papers and Presentations Status: Published Year Published: 2015 Citation: Ranabhat R, McClendon CJ, Souza e Silva AA, Pettiford SG, Conklin DR, Waterman JT. 2015. Swine production systems cause differential expression of superoxide dismutase in porcine tracheobronchial tissues. American Journal of Respiratory and Critical Care Medicine 191:A1718.


    Progress 09/01/12 to 08/31/13

    Outputs
    Target Audience: The primary target audience was undergraduate and graduate students in the disciplines of agricultural, environmental and life sciences at North Carolina A&T State University. This year there was an effort to reach middle and high school students also. We were also interested in targeting teaching and research faculty, and staff so that the knowledge gained will be transferred to students for years to come. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? Hands-on research training opportunities were provided for student research trainees (15 total) -- doctoral (3), master of science (4), and undergraduate students (8). Twenty-five (25) middle and high school students participated in hands-on activities in the proteomics laboratory during summer 2013. How have the results been disseminated to communities of interest? During Year 2, there were eight (8) conference presentations and nine (9) lectures/seminar. Conference Presentations (8 presentations, 162 participants impacted) Minor R, Luster-Teasley S, Alford V, Locklear J. “Engaging Middle School Girls in STEM with Case Studies and Hands-on Lab Experiences: A College Professor’s Experience.” 14th Annual Conference on Case Study Teaching in Science. September 20, 2013. UB-SUNY Buffalo, NY (15 participants) McClendon C, Pettiford SG, Conklin D, Laremore TN, Oh S-H, Waterman JT. 2013. Proteomics analysis of the impact of swine production style on airway morphology. American Thoracic Society International Conference. Philadelphia, PA. May 17-22, 2013. (15 participants) McClendon C, Oh S-H, Waterman JT. 2013. Analysis of the impact of production style on porcine airway morphology and proteome dynamics. ARD 17th Biennial Research Symposium. Jacksonville, FL. April 6-10, 2013. 3rd Place Graduate Student Oral Presentation Award. (40 participants) Minor T, Waterman JT, Idassi J, Smith D. Moringa Oleifera Tea Abrogates Inflammation. Association of Research Directors (ARD) Conference. Jacksonville, FL. April 6-10, 2013. (40 participants) McKnight M, Smith D, Hurley H, Waterman JT, Idassi J, Minor RC. 2013. Moringa Tea Decreases c-jun n-Terminal Kinase Activation in a Model of Acute Airway Inflammation. Minorities in Agriculture Natural Resources and Related Sciences (MANNRS). Sacramento, CA. March 21-23, 2013. (30 participants) Pettiford SG, Conklin CJ, McClendon CJ, Waterman JT. 2013. Histological evaluation of porcine airways from animals reared indoors and outdoors. Fayetteville State University Student Research Conference. Fayetteville, NC. March 12-13, 2013. (7 participants) McDaniel TC, McPherson CN, Gerald CL, Xu, K, Waterman JT. 2013. Quantitative Analysis of Lipopolysaccharides in Agricultural Dusts. FSU Student Research Conference. Fayetteville, NC. March 12-13, 2013. (5 participants) Minor RC, Waterman JT, Allen J, Smith D, Hurley S. “Moringa Oleifera Tea Abrogates Neutrophil Influx but not TNF-alpha Production” Society for Leukocyte Biology Annual Meeting- October 2012. Maui, Hi. (10 participants) Lectures and Seminars (9 activities, 188 participants) Lectures in 3 courses (ANSC 637, LASC 660, BIOL 755) Seminars (6) Waterman, J.T. 2013. “Activities of Toxicants-Part I.” ANSC 637 - Environmental Toxicology Course. Lecture with a component on the application of proteomics technologies to the science of toxicology, toxicoproteomics. Instructor: Jenora Waterman, Ph.D. Fall 2013 (16 participants) Muganda P. 2013. “Proteomics Workflows.” Department of Biology, North Carolina A&T State University. (BIOL 755) Host: Perpetua Muganda, Ph.D. April 2013 (8 participants) Waterman JT. 2013. The DIRT on agricultural dust. Agricultural Research Seminar Series. North Carolina A&T State University. March 21, 2013. (20 participants) Minor RC. 2013. “Diet and Lung- Inflammation: A Tale of Two Supplements” Biology Department Seminar, Department of Biology, North Carolina A&T State University. (15 participants) Minor RC. 2013. “Diet and Immune Modulation: An Investigation of Two Supplements, Beta glucan and Moringa Oleifera.” Departmental Seminar, East Carolina University. (20 participants) Minor RC. 2013. LASC 660-Special Techniques in Specimen Preparation, Immunological Techniques, Electron Microscopy, Radiology or Histotechnology Course. Western Blot Technique. Proteomics laboratory was used for gel imaging. Spring 2013. (14 participants) Minor RC. 2012. “Diet and Lung- Inflammation: A Tale of Two Supplements” presented at A Day in the Life of a Cell- Journal Club. Winston Salem State University. (35 participants) Minor RC. 2012. “Modulating Immunity Through Diet” Agricultural Research Seminar, North Carolina A&T State University. (30 participants) Minor RC. 2012. “Diet and Lung- Inflammation: A Tale of Two Supplements” Departmental Seminar, Biomedical Biotechnology Research Institute (BBRI), North Carolina Central University. (30 participants) Outreach (2 activities, 25 participants) Waterman, J.T. 2013. “Proteomics is Cool…It Really Is.” Visit by Middle and High School Group – Calvary Christian Center Youth Council. Host: Jenora Waterman, PhD, July 10, 2013. (12 participants) Minor RC, Luster-Teasley S. 2013. “Girls in Science” Middle School Summer Camp. Proteomics laboratory was used for imaging gels to visualize PCR products. North Carolina A&T State University. June 2013. (13 participants) What do you plan to do during the next reporting period to accomplish the goals? In the final year of the PrIME award, we will continue to teach and train students throught course and laboratory activities. We plan to share results through conference presentations and publications.

    Impacts
    What was accomplished under these goals? Proteomics lectures and training materials were utilized in three courses: ANSC 637 - Environmental Toxicology BIOL 755 - Systems Biology LASC 660 - Special Techniques in Specimen Preparation, Immunological Techniques, Electron Microscopy, Radiology or Histotechnology

    Publications

    • Type: Conference Papers and Presentations Status: Published Year Published: 2013 Citation: McClendon C, Pettiford S, Conklin D, Laremore TN, Oh S-H, Waterman JT. 2013. Proteomics analysis of the impact of swine production style on airway morphology. American Journal of Respiratory and Critical Care Medicine 187:A4486.


    Progress 09/01/11 to 08/31/12

    Outputs
    OUTPUTS: A proteomics laboratory was established at North Carolina A&T State University through the acquisition of a GelDoc imager and associated conversion screens, a gel stainer, 2D gel electrophoresis system, isoelectric focusing system (IEF), proteomics image acquisition and analysis software. Several lectures have been developed for the purpose of introducing and teaching proteomics principles and applications to undergraduate and graduate students. Outputs from this project include four (4) lectures, two (2) seminars, two (2) proteomics protocols, one (1) thesis entitled, "Proteomic Analysis of The Impact of Management Programs on Porcine Airways" was supported, in part, by this project; and three (3) conference presentations. There were also three (3) professional development activities sponsored by this project (23 people impacted). The findings have been disseminated through a master of science thesis and a series of lectures, seminars and conference presentations. There have been a total of 11 presentations and 222 people have been impacted. In Year 1 we have impacted a total of 245 students, staff teachers and researchers though this project. PARTICIPANTS: We have worked with several students on this project, mainly graduate students to develop, optimize and implement protocols prior to using them in courses. Currently, four (4) master level students have incorporated the use of proteomics resources, tools and technologies sponsored by this grant into their thesis projects. One thesis has been completed; at least three more have ongoing activity. Several presentations (11) have been given by the PD and graduate students working on this project. There have been three (3) professional development activities provided by this project and 23 people have been impacted. A Hands-On Two-Dimensional Gel-based Proteomics Training was sponsored for LASC 660 students (PrIME grant), April 16, 18, 23, 25, 2012. Students learned how to separate and stain proteins using two-dimensional (2D) gel electrophoresis. They were also trained to use the ChemiDoc Imaging System to analyze and interpret differences in protein abundance. Lectures were used to provide the basic principles on each technique. (7 participants: 1 faculty, 1 undergraduate and 5 graduate students) A Hands-On ChemiDoc training session was held for faculty, staff and students to demonstrate proper usage of the ChemiDoc imager and accompanying image analysis software. The training was conducted in collaboration with Arielle Linderman, Proteomics Systems Specialist at Bio-Rad Laboratories on April 5, 2012. (12 people impacted: 2 faculty, 2 staff, and 3 undergraduate and 5 graduate students) The PD, Jenora Waterman, attended the "Proteomics Four-Day Hands-On Workshop" at the National Jewish Health Research Center in Denver, Colorado (September 25-28, 2012); Course Director, Dr. Nichole Reisdorph. (1 participant) In Year 1 we have impacted a total of 245 students, staff, teachers and researchers though this project. TARGET AUDIENCES: The primary target audience is undergraduate and graduate students in the disciplines of agricultural, environmental and life sciences at North Carolina A&T State University. We are also interested in targeting teaching and research faculty, and staff so that the knowledge gained will be transferred to students for years to come. PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

    Impacts
    Proteomics is a relatively new branch of science with techniques that may be used in various discipline including agricultural and life sciences; however, students at minority serving institutions may have access to such resources. A proteomics laboratory was established at North Carolina Agricultural and Technical State University through the acquisition of several key pieces of equipment. The establishment of a proteomics lab has brought the discipline of proteomics to the campus of North Carolina A&T State University and given students access to leading edge instrumentation, principles and techniques. Access to leading edge technologies will provide training opportunities for minority students and produce a diverse set of leaders for the field of agriculture. We have been able to establish a proteomics laboratory at North Carolina A&T State University with gel-based proteomics capabilities. We purchased instrumentation to separate complex mixtures of proteins based on their size and charge, along with a ChemiDoc Imager and ImageLab Software for visualization and analysis of stained gels and blots. Students and faculty at North Carolina A&T State University who had not previously learned or applied proteomics technologies have gained proteomics knowledge and have the resources to apply them in the classroom and or laboratory setting. In year one, the USDA/NIFA-sponsored PrIME at North Carolina A&T State University project has impacted 245 participants through a series of presentations (222 or 90%) including proteomics-focused lectures, seminars, conferences, and hands-on training workshops (23 or 11%).

    Publications

    • No publications reported this period