Source: PURDUE UNIVERSITY submitted to
GENETICS AND BREEDING OF MINT
Sponsoring Institution
National Institute of Food and Agriculture
Project Status
TERMINATED
Funding Source
Reporting Frequency
Annual
Accession No.
0223587
Grant No.
(N/A)
Project No.
IND011817
Proposal No.
(N/A)
Multistate No.
(N/A)
Program Code
(N/A)
Project Start Date
May 1, 2010
Project End Date
Sep 30, 2014
Grant Year
(N/A)
Project Director
Dilkes, BR.
Recipient Organization
PURDUE UNIVERSITY
(N/A)
WEST LAFAYETTE,IN 47907
Performing Department
Horticulture and Landscape Architecture
Non Technical Summary
The U.S. essential mint oil industry requires sexually reproducing germplasm to insure its long-term sustainability. A lack of genetic diversity and clonal-reproduction in cultivated commercial mints combine with multiple risk factors, such as disease and abiotic stress sensitivity to threaten the continued production of this important specialty crop. Peppermint and spearmint are sterile polyploid hybrids that are not amenable to conventional breeding for crop improvement. The barriers to reproduction in this crop are not entirely understood, but a failure in meiosis due to a lack of paired chromosomes is one of the main impediments. By testing genome size in mint, we are able to estimate chromosome copy number and will be able to manipulate genetic material to enable breeding and improvement of mint for the first time. An alternative mechanism to improve sterile vegetatively propagated crops is transgenic manipulation, or genetic engineering. This is possible in mint and multiple transgenic mint plants have been made. For this method to be useful in the improvement of mint the genes introduced into the mint genomes need to be stably expressed year after year of vegetative propagation. We do not yet know whether transgenes in cultivated mints, which are both species hybrids and polyploids, are subject to periodic silencing or are faithfully and stably expressed over multiple cycles of propagation. We will determine the expression stability, and the mechanism of any identified instability in this crop to allow scientists and growers to make educated decisions about future improvement efforts. Genetic improvement of mint is necessary for the long-term sustainability of this important U.S. specialty crop Without these approaches there is little hope for varietal improvement or the survival of the mint industry in the U.S.
Animal Health Component
(N/A)
Research Effort Categories
Basic
(N/A)
Applied
(N/A)
Developmental
(N/A)
Classification

Knowledge Area (KA)Subject of Investigation (SOI)Field of Science (FOS)Percent
2012231108038%
2022231108138%
2062499104024%
Goals / Objectives
The U.S. essential mint oil industry requires sexually reproducing germplasm to insure its long-term sustainability. The a narrow genetic base of cultivated commercial mints combine with multiple risk factors, such as disease and abiotic stress sensitivity threaten the continued production of this important specialty crop. Peppermint and spearmint are sterile polyploid hybrids that are not amenable to conventional breeding for crop improvement. All commercial mints are vegetatively propagated as clones and their narrow genetic base results in low productivity and a high susceptibility to biotic and abiotic stresses. Additional risk factors include high production costs and low oil prices due to competition from low cost yet lower quality foreign oil. Genetic improvement of mint is necessary for the long-term sustainability of this important U.S. specialty crop. Without these approaches there is little hope for varietal improvement or the survival of the mint industry in the U.S. We will screen the entire Purdue Mentha collection for chromosome number. From this information it will be possible to select the appropriate material for the production of novel mint breeding lines. We will induce flowering in all of the material obtained and make crosses between accessions. Progeny will be tested for fertility and the role of chromosome number and species identity in controlling fertility determined. This will both expand and catalog the sexually-fertile germplasm collection in Mentha that can be screened for genetic polymorphisms associated with the mint oil biosynthetic machinery (e.g. menthone reductase) and lay the groundwork for the conversion of sexually reproductive tetraploid Mentha accessions into menthol-accumulating Verticillium-resistant cultivars and contribute to the production of novel peppermint-type hybrids by crossing. We will test transgene stability using an herbicide resistance gene that was previously used for invitro selection. Herbicide resistance gene expression will be assessed at the phenotypic level and herbicide tolerance quantitated in multiple independent clones. If any evidence of expression instability is found at the phenotypic level, we will determine whether DNA methylation or other epigenetic regulatory mechanisms are associated with the change in expression. At the conclusion of this project we will have an understanding of the genetic and karyotypic determinants of Mint reproductive competence.
Project Methods
Flow cytometric analysis of nuclear DNA content will be done on nuclei isolated and crudely purified from adult leaves. This technique works very well in mint and can be made robust to the high content of secondary compounds in mentha leaves by the addition of polyvinyl pyrolidone. We have found that 2h incubation with propidium iodide is sufficient for the fluorescent dye-dsDNA hybrids to equilibrate. Flow cytometric data will be warehoused and made available to the community via the PI's website. Novel hybrids will be generated by direct hand crossing of emasculated flowers. This is very labor intensive, but the only way to ensure that hybrids can be generated, as non-congenic pollen can be out competed. Novel hybrids will be made available as soon as hybridity is confirmed. Improved material will be offered to both the grower communities and the National Clonal Germplasm Repository for propagation and distribution. All improved materials will be propagated at Purdue for the duration of the project. Any NCGR accessions that currently do not have genome content descriptors will be supplied with genome size estimates. In addition, any NCGR accessions that we successfully double the genomes of will be offered to the NCGR as new accessions regardless of current assessed agronomic value to enable future crop improvement and crossing. Transgenic material will be treated with herbicide at 3 application strengths at and exceeding the normal field application rates. Herbicide damage will be assessed visually and quantitated. Growth and treatment will be carried out in randomized complete block design and effect of genotype, transgenic event, and herbicide treatment assessed statistically. All material exhibiting expression instability will be compared to material with stable expression for DNA methylation level. If successful, this will create a genetic base of sexually fertile material that can be used for cultivar development and continual and incremental improvement of Mentha essential oil crops. In addition, we will understand the frequency with which transgenes exhibit expression instability in this crop; providing growers and researchers with valuable information necessary to choose an appropriate cultivar improvement plan. Such studies are critically important for evaluating the risks and upsides of taking a transgenic approach in the modification of plant architecture, crop protection, or yield.

Progress 05/01/10 to 09/30/14

Outputs
Target Audience: Mint industry representatives, mint producers, food and personal product industry, and scientific community. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? This project has substantially contributed to the training of one technician. How have the results been disseminated to communities of interest? Results have been disseminated via presentiation to the Mint Industry research council. What do you plan to do during the next reporting period to accomplish the goals? Nothing Reported

Impacts
What was accomplished under these goals? DNA methylation was demonstrated to be altered at transgenic loci in mint during vegetative propagation. This variation was associated with differences in expression of the transgenes and in plant phenotype. Chromosome doubling was carried out for Black Mitcham peppermint and two polyploid derivatives were obtained and characterized. Neither chromosome doubled type was substantially sexually fertile, indicating that a more substantial genetic approach will be required to generate a sexually fertile and biochmecially favorable (e.g. organoleptically acceptable) mint accession. Work towards that was begun during the last year of the project.

Publications


    Progress 10/01/12 to 09/30/13

    Outputs
    Target Audience: We have evaluated transgene methylation stabilty and herbicide tolerance trait expression. This has indicated that mutliple independent lines have been subject to silencing during clonal propagation and highlight challenges faced when using GMO improvement approaches in this crop. We continue to make progress on working with the sexually reproducing mint species that form the progenitor species complex that gives rise to the various horticulturaly relevant hybrids. Changes/Problems: Nothing Reported What opportunities for training and professional development has the project provided? This project has engaged one research technician and provided an opportunity to learn both novel molecular techniques for the analysis of DNA methylation and flow cytometric analysis of nuclear DNA content. How have the results been disseminated to communities of interest? The PD has traveled to the Mint Industry Research Council annual meeting and met with the mint industry regional groups for formal research presentations. In Jan 2014 the PD will again travel to the annual meeting of the Mint Industry Research Council. What do you plan to do during the next reporting period to accomplish the goals? We expect to publish our findings on transgene stabilty. We expect to publish our method for high throughput determination of nuclear DNA contents. We will continue to work with the novel polyploid mints and with the sexually fertile mint species.

    Impacts
    What was accomplished under these goals? We have flow cytometrically karyotyed the entire Purdue mint collection. We have generated polyploid mint derivatives. We have tested for transgene expression stability.

    Publications


      Progress 10/01/11 to 09/30/12

      Outputs
      OUTPUTS: Handcrosses of polyploid mints were completed and seed-like propagules were planted. To date we have not seen germination of any of the seed-like propagules. In addition, we have improved the flow cytometric methods and ported them to be used on a higher throughput flow cytometric analysis machine that is substantially more automated. PARTICIPANTS: Brian Dilkes, PI. Tena Graham, a technician in the Dilkes lab was responsible for the hand crossing seed collection and flow cytometry. She has also taken the lead in interacting with those interested in integrating flow cytometry into their plant genetics research. TARGET AUDIENCES: Fellow scientsits. Plant breeding and improvement companies. PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

      Impacts
      Dissemination of the method to other laboratories, in particular those working with plant tissues rich in terpenoids and polyphenolic compounds has been successful. Tena Graham has worked both with industry partners and with ecological laboratories in order to allow them to integrate flow cytometric analyses of nuclear DNA into their research programs.

      Publications

      • No publications reported this period


      Progress 10/01/10 to 09/30/11

      Outputs
      OUTPUTS: We have had meetings with industry representatives to discuss the possible incorporation of our polyploid mints into flavorings and other essential oil products. This has made industry end-users for the agricultural product aware of the new mint varieties and begun to connect the mint variety improvement efforts at Purdue with the personal products, food, and flavor industries. PARTICIPANTS: Brian Dilkes and Tena Graham participated in the collection and interpretation of the data from the Dilkes lab. Stephen Weller collaborated with us and made available the mint collection, transgenic lines, and expertise in herbicide application and resistance scoring as well as sharing primary data from the initial screening of transgenic events. TARGET AUDIENCES: Molecular Biologists seeking to improve mint crops, flavor, food and personal products industry, mint producers. PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

      Impacts
      We have identified two polyploid derivatives of Mentha piperita using flow cytometry. Both polyploid individuals have been propagated vegetatively. Both lines were allowed to flower and self pollinate and we have collected fruits. Currently the data from the flow cytometry screens of the Purdue Mentha collection are being organized for dissemination via the Purdue Library digital collections. A publication describing the lines and ploidy levels as well as the phenotypes of the two polyploid Mentha piperita lines is planned for this year to coincide with the warehousing of the flow cytometry data in the Purdue Library digital repository for global open-access dissemination. In addition to the work on mint genome size we have completed our follow-up study on the stability of transgene expression in mint. We have determined that Glufosinate resistance, conditioned by the expression of a bacterial enzyme provided on a transgene, was not stable over the 6 to 10 year study period. Alarmingly, those lines with the highest resistance levels in the first two years did not maintain trait expression. This indicates that either constant monitoring of clones and re-selection will be needed to guarantee trait stability or that additional research will need to be conducted to determine what promotes transgenic trait stability in mint. We tested the hypothesis that DNA methylation would be be found on the transgenes when herbicide resistance is lost. This was confirmed, and we demonstrated that a simple PCR-based molecular test of DNA methylation was sufficient. This suggests that epigenetic silencing may be the culprit in the loss of expression for the herbicide resistance traits. A publication is planned for this year.

      Publications

      • No publications reported this period


      Progress 10/01/09 to 09/30/10

      Outputs
      OUTPUTS: We have completed the flow cytometric analysis of the Purdue Mentha collection. This has identified mint plants of a variety of chromosome constitutions, including apparent whole genome duplication of Mentha piperita cv. Black Mitcham, the top accession for flavor and highest acreage and dollar value in the US. We are pursuing a plant variety protection patent for these lines and an invention disclosure has been filed with the Purdue University Office of Technology Commercialization. Flowering was induced in the entire collection (including the polyploid M. piperita) and fruits were collected. We are currently sorting through this material to identify seeds for planting. PARTICIPANTS: Brian Dilkes Tena Graham, a technician in the PD laboratory was responsible for much of the flow cytometry, some plant care, hand crossing, and seed collection. This was Tena's training in flow cytometry and has resulted in significant career development and new skill acquisition. She is now also trained in the application of this technique to Corn, sorghum, and rice. Stephen Weller, a professor at Purdue, is a collaborating faculty who provided plant material and discussed the economic impact of the study. There were no other collaborators or support given to this project. TARGET AUDIENCES: Mint industry - growers and processors PROJECT MODIFICATIONS: Nothing significant to report during this reporting period.

      Impacts
      We have filed an invention disclosure. Based on the finding of a whole genome duplicated M. piperita we are testing these plants for phenotypic stability by vegetative propagation of a large number of plants and further testing for sexual fertility by hand crossing.

      Publications

      • No publications reported this period